Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 1.6e-126 456.1 222 100.0
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 1.6e-110 402.9 221 85.5
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 2.7e-110 402.1 221 86.4
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 2.3e-109 399.1 221 86.0
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 1.5e-108 396.4 221 85.5
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 9.0e-106 387.1 221 83.7
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 1.9e-103 379.4 221 81.4
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 5.5e-103 377.9 221 81.9
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 2.1e-102 375.9 221 80.5
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 4.3e-100 368.2 221 77.4
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 4.3e-100 368.2 221 77.4
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 2.2e-99 365.9 221 78.7
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 6.1e-94 347.8 220 74.1
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 7.9e-94 347.4 222 75.2
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.8e-93 346.3 220 72.3
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 2.3e-93 345.9 222 73.9
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 3.0e-93 345.5 220 73.6
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 3.0e-93 345.5 220 72.7
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 3.0e-93 345.5 225 74.7
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 5.1e-93 344.7 220 72.7
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 6.7e-93 344.4 220 71.4
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 6.7e-93 344.4 220 74.5
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 1.1e-92 343.6 220 72.7
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 2.5e-92 342.4 205 77.1
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 5.7e-92 341.3 220 70.9
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 7.4e-92 340.9 220 71.8
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 1.3e-91 340.1 220 70.9
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 1.7e-91 339.7 224 72.3
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 3.7e-91 338.6 220 70.5
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 4.8e-91 338.2 222 73.9
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 6.3e-91 337.8 220 70.0
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 6.3e-91 337.8 220 72.3
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 8.2e-91 337.4 223 72.2
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 8.2e-91 337.4 220 70.5
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 1.1e-90 337.0 220 70.9
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 1.4e-90 336.7 220 71.4
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 2.4e-90 335.9 220 70.9
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 6.9e-90 334.3 221 71.0
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 5.9e-89 331.3 221 71.5
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 5.9e-89 331.3 220 70.0
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 7.7e-89 330.9 234 67.5
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 7.7e-89 330.9 224 72.3
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 7.7e-89 330.9 220 70.0
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 1.0e-88 330.5 222 69.8
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 1.3e-88 330.1 223 68.2
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 2.2e-88 329.3 222 72.5
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 2.9e-88 328.9 221 69.7
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.9e-88 328.9 221 69.7
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 3.8e-88 328.6 220 68.6
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.8e-88 328.6 221 70.1
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 3.8e-88 328.6 223 70.4
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 3.8e-88 328.6 224 71.4
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 6.5e-88 327.8 225 72.0
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 6.5e-88 327.8 224 72.3
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 8.5e-88 327.4 224 71.0
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.5e-87 325.9 222 69.4
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.5e-87 325.9 222 69.4
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 3.2e-87 325.5 220 68.2
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 4.2e-87 325.1 221 69.7
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 4.2e-87 325.1 222 67.6
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 9.4e-87 323.9 222 68.5
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.2e-86 323.6 222 68.9
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.6e-86 323.2 220 67.3
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.1e-86 322.8 220 66.8
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.1e-86 322.8 220 66.8
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 2.1e-86 322.8 222 69.4
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 4.7e-86 321.6 220 69.5
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 7.9e-86 320.9 220 67.7
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 1.0e-85 320.5 222 68.9
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 3.9e-85 318.5 216 69.4
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 3.9e-85 318.5 267 59.6
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 3.3e-84 315.5 217 68.2
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.4e-84 315.1 220 66.4
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 5.7e-84 314.7 184 78.3
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 5.7e-84 314.7 216 69.0
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 7.4e-84 314.3 227 67.8
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 9.7e-84 313.9 220 65.9
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.8e-83 312.4 220 66.4
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 4.8e-83 311.6 222 68.9
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 1.4e-82 310.1 219 68.0
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 2.4e-82 309.3 223 66.4
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 2.4e-82 309.3 222 67.1
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 7.7e-81 304.3 221 66.1
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 2.2e-80 302.8 222 65.8
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 2.2e-80 302.8 221 66.5
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 1.5e-79 300.1 217 65.0
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 3.2e-79 298.9 223 65.5
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 4.2e-79 298.5 222 65.3
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 9.4e-79 297.4 203 68.0
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 1.0e-77 293.9 223 62.8
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.3e-77 292.7 221 64.7
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 4.0e-77 292.0 187 73.3
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 5.2e-77 291.6 223 62.3
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 8.8e-77 290.8 204 66.2
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 4.4e-76 288.5 223 60.5
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 5.7e-76 288.1 223 60.5
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 5.7e-76 288.1 223 60.5
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 5.7e-76 288.1 223 61.0
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 7.5e-76 287.7 216 63.0
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 9.7e-76 287.3 223 60.5
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 1.3e-75 287.0 218 63.8
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 2.8e-75 285.8 223 60.5
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 1.4e-74 283.5 223 59.6
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 1.4e-74 283.5 222 63.1
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 2.4e-74 282.7 223 60.5
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 1.2e-73 280.4 223 58.7
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 1.6e-73 280.0 223 58.7
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 4.5e-73 278.5 223 58.3
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 3.8e-72 275.4 224 58.5
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 8.5e-72 274.2 223 57.8
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 1.5e-71 273.5 220 60.9
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 2.5e-71 272.7 225 61.8
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 4.8e-67 258.5 177 70.6
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.8e-66 256.5 184 66.3
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 2.0e-65 253.1 253 54.2
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 2.0e-65 253.1 177 68.4
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 3.8e-64 248.8 312 46.5
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 8.5e-64 247.7 435 36.8
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 1.2e-62 243.8 224 54.0
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 3.0e-61 239.2 224 53.6
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.2e-60 237.3 220 56.4
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.7e-59 233.4 221 55.2
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 9.2e-58 227.6 151 72.2
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 1.6e-54 216.9 204 50.0
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 9.8e-52 207.6 208 48.1
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 1.8e-50 203.4 208 46.2
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 1.5e-47 193.7 202 48.0
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 3.1e-45 186.0 129 66.7
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 1.7e-43 180.3 184 45.7
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 6.4e-43 178.3 152 59.2
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 3.0e-40 169.5 121 65.3
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 3.3e-39 166.0 100 75.0
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 9.2e-34 147.9 95 74.7
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 5.1e-32 142.1 99 67.7
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 1.6e-30 137.1 195 36.4
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 1.2e-28 131.0 99 64.6
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 3.4e-28 129.4 92 62.0
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.4e-28 129.0 92 62.0
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 2.9e-27 126.3 74 71.6
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 1.4e-21 107.5 88 62.5
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 2.4e-21 106.7 211 31.8
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 1.6e-17 94.0 81 54.3
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 1.3e-14 84.3 66 65.2
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 2.7e-09 66.6 65 52.3
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 3.9e-08 62.8 54 59.3
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 3.9e-08 62.8 54 59.3
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 5.1e-08 62.4 54 59.3
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 3.3e-07 59.7 70 45.7
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.6e-06 57.4 43 58.1


User provided reference genes

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