Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18293 Trifolium pratense HOM05D008084 ORTHO05D010227 2.8e-172 608.6 326 100.0
Medtr5g075400 Medicago truncatula HOM05D008084 ORTHO05D010227 4.8e-124 448.4 344 70.9
Psat2g050960 Pisum sativum HOM05D008084 ORTHO05D010227 1.8e-123 446.4 330 71.5
Ca_05708_v3 Cicer arietinum L. HOM05D008084 ORTHO05D010227 5.0e-121 438.3 332 71.1
Glyma.02G236300 Glycine max HOM05D008084 ORTHO05D010227 1.4e-83 313.9 330 56.1
Glyma.14G204200 Glycine max HOM05D008084 ORTHO05D010227 1.9e-83 313.5 332 56.6
Phvul.008G247700 Phaseolus vulgaris HOM05D008084 ORTHO05D010227 5.2e-78 295.4 335 51.9
LjContig00141g0012818 Lotus japonicus HOM05D008084 ORTHO05D010227 2.6e-77 293.1 331 53.5
VMungo0647G2268 Vigna mungo HOM05D008084 ORTHO05D010227 1.9e-75 287.0 334 51.5
VMungo0540G0456 Vigna mungo HOM05D008084 ORTHO05D010227 4.0e-70 269.2 337 49.0
Phvul.006G078700 Phaseolus vulgaris HOM05D008084 ORTHO05D010227 1.5e-69 267.3 342 48.5
arahy.Tifrunner.gnm1.ann1.QQ3HDC Arachis hypogaea HOM05D008084 ORTHO05D010227 1.9e-67 260.4 351 46.7
Lj6g0015607 Lotus japonicus HOM05D008084 ORTHO05D010227 2.5e-64 250.0 329 50.5
Glyma.18G052300 Glycine max HOM05D008084 ORTHO05D010227 7.4e-64 248.4 341 47.2
arahy.Tifrunner.gnm1.ann1.VW3DCY Arachis hypogaea HOM05D008084 ORTHO05D010227 2.8e-63 246.5 352 44.3
Oeu015570.1 Olea europaea HOM05D008084 ORTHO05D010227 1.1e-59 234.6 343 44.3
Ca_15056_v3 Cicer arietinum L. HOM05D008084 ORTHO05D010227 1.9e-59 233.8 326 47.5
MD03G1051700 Malus domestica HOM05D008084 ORTHO05D010227 1.6e-58 230.7 361 49.3
Manes.02G211900 Manihot esculenta HOM05D008084 ORTHO05D010227 4.6e-58 229.2 328 44.8
Gorai.003G152600 Gossypium raimondii HOM05D008084 ORTHO05D010227 6.7e-57 225.3 329 45.3
Gohir.D03G145500 Gossypium hirsutum HOM05D008084 ORTHO05D010227 1.1e-56 224.6 329 45.6
Thecc.09G363800 Theobroma cacao HOM05D008084 ORTHO05D010227 2.5e-56 223.4 329 43.8
Gohir.A03G023200 Gossypium hirsutum HOM05D008084 ORTHO05D010227 9.6e-56 221.5 327 45.0
TAR636G1366 Trochodendron aralioides HOM05D008084 ORTHO05D010227 1.3e-55 221.1 328 44.5
CANSAT54G2569 Cannabis sativa HOM05D008084 ORTHO05D010227 1.6e-55 220.7 338 41.7
Aqoxy4G02419 Aquilegia oxysepala HOM05D008084 ORTHO05D010227 3.7e-55 219.5 330 44.5
MD11G1053800 Malus domestica HOM05D008084 ORTHO05D010227 3.7e-55 219.5 373 45.6
Potri.013G157100 Populus trichocarpa HOM05D008084 ORTHO05D010227 1.1e-54 218.0 331 43.5
Prupe.6G041100 Prunus persica HOM05D008084 ORTHO05D010227 6.9e-54 215.3 355 45.4
FAN25G2941 Fragaria x ananassa HOM05D008084 ORTHO05D010227 2.0e-53 213.8 336 46.1
FvH4_3g40511 Fragaria vesca HOM05D008084 ORTHO05D010227 4.5e-53 212.6 341 45.2
FAN11G0725 Fragaria x ananassa HOM05D008084 ORTHO05D010227 4.5e-53 212.6 341 45.2
TWI75G0204 Tripterygium wilfordii HOM05D008084 ORTHO05D010227 1.3e-52 211.1 313 45.0
Potri.019G130200 Populus trichocarpa HOM05D008084 ORTHO05D010227 2.2e-52 210.3 346 40.5
Cc01_g15320 Coffea canephora HOM05D008084 ORTHO05D010227 4.9e-52 209.1 342 43.6
TWI31G0108 Tripterygium wilfordii HOM05D008084 ORTHO05D010227 4.9e-52 209.1 337 43.6
Medtr3g467150 Medicago truncatula HOM05D008084 ORTHO05D010227 7.1e-51 205.3 280 46.8
Psat5g148440 Pisum sativum HOM05D008084 ORTHO05D010227 1.2e-50 204.5 276 46.0
Sed0017021 Sechium edule HOM05D008084 ORTHO05D010227 7.9e-50 201.8 340 37.9
TWI79G0851 Tripterygium wilfordii HOM05D008084 ORTHO05D010227 7.9e-50 201.8 331 42.3
HanXRQChr16g0522641 Helianthus annuus HOM05D008084 ORTHO05D010227 1.3e-49 201.1 358 41.9
MELO3C020485.2 Cucumis melo HOM05D008084 ORTHO05D010227 8.7e-49 198.4 348 39.7
Dinv12280 Davidia involucrata HOM05D008084 ORTHO05D010227 8.7e-49 198.4 313 40.9
CsaV3_1G004770 Cucumis sativus L. HOM05D008084 ORTHO05D010227 1.1e-48 198.0 350 38.9
FAN16G3304 Fragaria x ananassa HOM05D008084 ORTHO05D010227 1.1e-48 198.0 344 44.5
ECA247G2653 Erigeron canadensis HOM05D008084 ORTHO05D010227 1.5e-48 197.6 366 39.1
SalBow2G0186 Salvia bowleyana HOM05D008084 ORTHO05D010227 2.2e-47 193.7 270 44.1
TAR623G0794 Trochodendron aralioides HOM05D008084 ORTHO05D010227 1.1e-46 191.4 325 41.8
TPR.G28793 Trifolium pratense HOM05D008084 ORTHO05D010227 2.0e-45 187.2 283 44.5
CiPaw.13G063700 Carya illinoinensis HOM05D008084 ORTHO05D010227 4.5e-45 186.0 344 39.2
Migut.D00819 Erythranthe guttata HOM05D008084 ORTHO05D010227 1.7e-44 184.1 352 41.5
PSO384G0724 Papaver somniferum HOM05D008084 ORTHO05D010227 1.7e-44 184.1 267 42.7
PSO339G0360 Papaver somniferum HOM05D008084 ORTHO05D010227 2.2e-44 183.7 271 43.2
GSVIVG01024560001 Vitis vinifera HOM05D008084 ORTHO05D010227 1.4e-43 181.0 183 53.0
Eucgr.B04026 Eucalyptus grandis HOM05D008084 ORTHO05D010227 2.1e-42 177.2 172 54.1
PGR102G0866 Punica granatum HOM05D008084 ORTHO05D010227 7.9e-42 175.3 414 34.5
Lsat_1_v5_gn_9_13820 Lactuca sativa HOM05D008084 ORTHO05D010227 2.2e-39 167.2 289 39.1
RcHm_v2.0_Chr5g0073191 Rosa chinensis HOM05D008084 ORTHO05D010227 2.2e-39 167.2 242 39.7
Cpa.g.sc2.297 Carica papaya HOM05D008084 ORTHO05D010227 3.2e-35 153.3 227 42.3
Zm00001eb419060 Zea mays HOM05D008084 ORTHO05D010227 2.8e-31 140.2 177 46.9
Cfa011830 Carpinus fangiana HOM05D008084 ORTHO05D010227 6.3e-31 139.0 300 37.0
HPP92_028207 Vanilla planifolia HOM05D008084 ORTHO05D010227 1.4e-30 137.9 120 53.3
MBI03_g15595_MAGBIO Magnolia biondii HOM05D008084 ORTHO05D010227 1.9e-27 127.5 326 34.7
Rhsim13G0059500 Rhododendron simsii HOM05D008084 ORTHO05D010227 2.7e-26 123.6 254 33.1
HPP92_025125 Vanilla planifolia HOM05D008084 ORTHO05D010227 8.0e-26 122.1 105 52.4
SEGI_31879 Sequoiadendron giganteum HOM05D008084 ORTHO05D010227 1.5e-24 117.9 310 31.0
Actinidia11623 Actinidia chinensis HOM05D008084 ORTHO05D010227 1.6e-21 107.8 211 38.4
Actinidia23166 Actinidia chinensis HOM05D008084 ORTHO05D010227 1.3e-15 88.2 191 36.6
Mapoly0102s0044 Marchantia polymorpha HOM05D008084 ORTHO05D010227 2.9e-12 77.0 68 50.0
ATR1127G215 Amborella trichopoda HOM05D008084 ORTHO05D010227 2.6e-08 63.9 196 26.5
Potri.001G135300 Populus trichocarpa HOM05D000833 ORTHO05D000969 2.2e-07 60.8 83 36.1
Eucgr.E01310 Eucalyptus grandis HOM05D000833 ORTHO05D000969 2.8e-07 60.5 82 37.8
Potri.003G098200 Populus trichocarpa HOM05D000833 ORTHO05D000969 4.8e-07 59.7 83 36.1
CANSAT21G0221 Cannabis sativa HOM05D000833 ORTHO05D000969 6.3e-07 59.3 83 37.3
Cfa012534 Carpinus fangiana HOM05D000833 ORTHO05D000969 6.3e-07 59.3 83 36.1
ClCG10G001220 Citrullus lanatus HOM05D000833 ORTHO05D000969 6.3e-07 59.3 83 36.1
Haze_08127 Corylus avellana HOM05D000833 ORTHO05D000969 6.3e-07 59.3 83 36.1
MELO3C013815.2 Cucumis melo HOM05D000833 ORTHO05D000969 6.3e-07 59.3 83 36.1
CsaV3_3G001260 Cucumis sativus L. HOM05D000833 ORTHO05D000969 6.3e-07 59.3 83 36.1
Gohir.D12G207700 Gossypium hirsutum HOM05D000833 ORTHO05D000969 6.3e-07 59.3 82 37.8
Gorai.008G223200 Gossypium raimondii HOM05D000833 ORTHO05D000969 6.3e-07 59.3 82 37.8
Potri.012G042500 Populus trichocarpa HOM05D000833 ORTHO05D000969 6.3e-07 59.3 114 36.0
Thecc.03G311800 Theobroma cacao HOM05D000833 ORTHO05D000969 6.3e-07 59.3 82 36.6
HPP92_014046 Vanilla planifolia HOM05D000833 ORTHO05D000969 6.3e-07 59.3 101 38.6
CAN.G773.24 Capsicum annuum HOM05D000833 ORTHO05D000969 8.3e-07 58.9 83 34.9
Manes.15G192700 Manihot esculenta HOM05D000833 ORTHO05D000969 8.3e-07 58.9 104 34.6
Prupe.5G026100 Prunus persica HOM05D000833 ORTHO05D000969 8.3e-07 58.9 83 36.1
Rhsim11G0029100 Rhododendron simsii HOM05D000833 ORTHO05D000969 8.3e-07 58.9 82 35.4
Sabra03G0066600 Salix brachista HOM05D000833 ORTHO05D000969 8.3e-07 58.9 83 36.1
Hund11166 Selenicereus undatus HOM05D000833 ORTHO05D000969 8.3e-07 58.9 113 32.7
CSS0017013 Camellia sinensis var. sinensis HOM05D000833 ORTHO05D000969 1.1e-06 58.5 94 34.0
CSS0020519 Camellia sinensis var. sinensis HOM05D000833 ORTHO05D000969 1.1e-06 58.5 82 36.6
CDE03G0275 Ceratophyllum demersum HOM05D000833 ORTHO05D000969 1.1e-06 58.5 104 34.6
Peaxi162Scf00045g00324 Petunia axillaris HOM05D000833 ORTHO05D000969 1.1e-06 58.5 83 36.1
Peaxi162Scf00052g00332 Petunia axillaris HOM05D000833 ORTHO05D000969 1.1e-06 58.5 94 31.9
vmacro00243 Vaccinium macrocarpon HOM05D000833 ORTHO05D000969 1.1e-06 58.5 82 35.4
HPP92_009018 Vanilla planifolia HOM05D000833 ORTHO05D000969 1.1e-06 58.5 83 33.7
Dinv09077 Davidia involucrata HOM05D000833 ORTHO05D000969 1.4e-06 58.2 109 31.2
Sabra01G0104700 Salix brachista HOM05D000833 ORTHO05D000969 1.4e-06 58.2 82 35.4
SalBow8G2766 Salvia bowleyana HOM05D000833 ORTHO05D000969 1.4e-06 58.2 83 34.9
MSTRG.1793 Avicennia marina HOM05D000833 ORTHO05D000969 1.8e-06 57.8 104 30.8
CiPaw.11G100000 Carya illinoinensis HOM05D000833 ORTHO05D000969 1.8e-06 57.8 83 34.9
CiPaw.12G069500 Carya illinoinensis HOM05D000833 ORTHO05D000969 1.8e-06 57.8 83 34.9
Dinv06914 Davidia involucrata HOM05D000833 ORTHO05D000969 1.8e-06 57.8 82 36.6
Thhalv10006775m.g Eutrema salsugineum HOM05D000833 ORTHO05D000969 1.8e-06 57.8 97 29.9
Glyma.01G011200 Glycine max HOM05D000833 ORTHO05D000969 1.8e-06 57.8 82 34.1
Lj7A123G18 Lonicera japonica HOM05D000833 ORTHO05D000969 1.8e-06 57.8 82 34.1
MD06G1025000 Malus domestica HOM05D000833 ORTHO05D000969 1.8e-06 57.8 83 36.1
Nn6g32151 Nelumbo nucifera HOM05D000833 ORTHO05D000969 1.8e-06 57.8 112 34.8
Phvul.002G134200 Phaseolus vulgaris HOM05D000833 ORTHO05D000969 1.8e-06 57.8 82 34.1
vmacro14208 Vaccinium macrocarpon HOM05D000833 ORTHO05D000969 1.8e-06 57.8 104 31.7
VMungo1215G1279 Vigna mungo HOM05D000833 ORTHO05D000969 1.8e-06 57.8 82 34.1
Atru.chr6.1543 Acer truncatum HOM05D000833 ORTHO05D000969 2.4e-06 57.4 83 34.9
arahy.Tifrunner.gnm1.ann1.HQ8ILA Arachis hypogaea HOM05D000833 ORTHO05D000969 2.4e-06 57.4 82 35.4
arahy.Tifrunner.gnm1.ann1.X0V096 Arachis hypogaea HOM05D000833 ORTHO05D000969 2.4e-06 57.4 82 35.4
AUR62003243 Chenopodium quinoa HOM05D000833 ORTHO05D000969 2.4e-06 57.4 114 35.1
AUR62027227 Chenopodium quinoa HOM05D000833 ORTHO05D000969 2.4e-06 57.4 114 35.1
Migut.E01324 Erythranthe guttata HOM05D000833 ORTHO05D000969 2.4e-06 57.4 82 35.4
Lj2g0010639 Lotus japonicus HOM05D000833 ORTHO05D000969 2.4e-06 57.4 82 34.1
Medtr5g027970 Medicago truncatula HOM05D000833 ORTHO05D000969 2.4e-06 57.4 82 34.1
Psat2g139960 Pisum sativum HOM05D000833 ORTHO05D000969 2.4e-06 57.4 82 34.1
PGR042G3111 Punica granatum HOM05D000833 ORTHO05D000969 2.4e-06 57.4 82 34.1
unitig_899.g14737 Utricularia gibba HOM05D000833 ORTHO05D000969 2.4e-06 57.4 83 34.9
AagrBONN_evm.TU.Sc2ySwM_368.1036 Anthoceros agrestis HOM05D000833 ORTHO05D000969 3.1e-06 57.0 82 36.6
CAN.G884.16 Capsicum annuum HOM05D000833 ORTHO05D000969 3.1e-06 57.0 94 34.0
Cpa.g.sc16.6 Carica papaya HOM05D000833 ORTHO05D000969 3.1e-06 57.0 82 35.4
Rhsim07G0134100 Rhododendron simsii HOM05D000833 ORTHO05D000969 3.1e-06 57.0 94 31.9
SGA_v2.0_scaffold144G35859 Striga asiatica HOM05D000833 ORTHO05D000969 3.1e-06 57.0 83 36.1
TWI60G0715 Tripterygium wilfordii HOM05D000833 ORTHO05D000969 3.1e-06 57.0 93 33.3
TAR628G0111 Trochodendron aralioides HOM05D000833 ORTHO05D000969 3.1e-06 57.0 69 39.1
AUR62007370 Chenopodium quinoa HOM05D000833 ORTHO05D000969 4.1e-06 56.6 82 34.1
AUR62018619 Chenopodium quinoa HOM05D000833 ORTHO05D000969 4.1e-06 56.6 82 34.1
HanXRQChr08g0227081 Helianthus annuus HOM05D000833 ORTHO05D000969 4.1e-06 56.6 82 36.6
Lalb_Chr09g0325371 Lupinus albus HOM05D000833 ORTHO05D000969 4.1e-06 56.6 83 33.7
Nn5g29416 Nelumbo nucifera HOM05D000833 ORTHO05D000969 4.1e-06 56.6 107 32.7
Oeu023586.1 Olea europaea HOM05D000833 ORTHO05D000969 4.1e-06 56.6 83 33.7
SGA_v2.0_scaffold111G31386 Striga asiatica HOM05D000833 ORTHO05D000969 4.1e-06 56.6 83 36.1
Ah.12g055600 Amaranthus hybridus HOM05D000833 ORTHO05D000969 5.4e-06 56.2 105 29.5
TPR.G19469 Trifolium pratense HOM05D000833 ORTHO05D000969 5.4e-06 56.2 82 32.9
Aqoxy3G02140 Aquilegia oxysepala HOM05D000833 ORTHO05D000969 7.0e-06 55.8 82 34.1
AL1G46020 Arabidopsis lyrata HOM05D000833 ORTHO05D000969 7.0e-06 55.8 80 33.8
MSTRG.11902 Avicennia marina HOM05D000833 ORTHO05D000969 7.0e-06 55.8 83 34.9
CAN.G137.25 Capsicum annuum HOM05D000833 ORTHO05D000969 7.0e-06 55.8 94 33.0
Ca_25160_v3 Cicer arietinum L. HOM05D000833 ORTHO05D000969 7.0e-06 55.8 82 34.1
HanXRQChr17g0558101 Helianthus annuus HOM05D000833 ORTHO05D000969 7.0e-06 55.8 82 35.4
Lsat_1_v5_gn_6_17640 Lactuca sativa HOM05D000833 ORTHO05D000969 7.0e-06 55.8 82 35.4
Peaxi162Scf00803g00422 Petunia axillaris HOM05D000833 ORTHO05D000969 7.0e-06 55.8 94 33.0
Atru.chr5.2898 Acer truncatum HOM05D000833 ORTHO05D000969 9.1e-06 55.5 67 37.3
Aqoxy5G01756 Aquilegia oxysepala HOM05D000833 ORTHO05D000969 9.1e-06 55.5 66 39.4
EL10Ac5g11990 Beta vulgaris HOM05D000833 ORTHO05D000969 9.1e-06 55.5 82 32.9
C08p47580 Brassica napus HOM05D000833 ORTHO05D000969 9.1e-06 55.5 44 52.3
CARHR031270 Cardamine hirsuta HOM05D000833 ORTHO05D000969 9.1e-06 55.5 80 33.8
Nn3g18445 Nelumbo nucifera HOM05D000833 ORTHO05D000969 9.1e-06 55.5 69 40.6
Nn4g24493 Nelumbo nucifera HOM05D000833 ORTHO05D000969 9.1e-06 55.5 82 36.6
Psat2g164040 Pisum sativum HOM05D000833 ORTHO05D000969 9.1e-06 55.5 66 40.9
PGR083G0675 Punica granatum HOM05D000833 ORTHO05D000969 9.1e-06 55.5 69 39.1
Sabra12G0029700 Salix brachista HOM05D000833 ORTHO05D000969 9.1e-06 55.5 114 31.6
Hund16563 Selenicereus undatus HOM05D000833 ORTHO05D000969 9.1e-06 55.5 112 33.9


User provided reference genes

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