Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18261 Trifolium pratense HOM05D003698 ORTHO05D004320 3.2e-37 157.9 79 100.0
TPR.G40455 Trifolium pratense HOM05D003698 ORTHO05D004320 4.4e-31 137.5 86 83.7
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 2.1e-28 128.6 92 75.0
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 3.5e-28 127.9 86 79.1
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 4.6e-28 127.5 86 75.6
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 7.8e-28 126.7 86 76.7
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 8.7e-27 123.2 92 69.6
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 1.9e-26 122.1 86 74.4
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 3.3e-26 121.3 86 72.1
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 3.3e-26 121.3 86 73.3
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 3.3e-26 121.3 86 72.1
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 3.3e-26 121.3 86 72.1
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 9.6e-26 119.8 86 72.1
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 9.6e-26 119.8 86 70.9
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 1.6e-25 119.0 86 72.1
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 1.6e-25 119.0 86 72.1
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 1.6e-25 119.0 86 72.1
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.6e-25 119.0 86 72.1
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 1.6e-25 119.0 86 73.3
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 2.1e-25 118.6 86 70.9
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 2.1e-25 118.6 86 72.1
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 2.8e-25 118.2 86 72.1
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 2.8e-25 118.2 86 72.1
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 2.8e-25 118.2 86 72.1
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 3.6e-25 117.9 86 70.9
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 4.7e-25 117.5 86 69.8
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.7e-25 117.5 86 69.8
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 6.2e-25 117.1 86 70.9
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 6.2e-25 117.1 86 72.1
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 8.1e-25 116.7 86 69.8
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 8.1e-25 116.7 86 70.9
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 8.1e-25 116.7 86 68.6
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 8.1e-25 116.7 86 72.1
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 8.1e-25 116.7 86 70.9
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 8.1e-25 116.7 86 70.9
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 1.1e-24 116.3 92 65.2
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 1.4e-24 115.9 92 67.4
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 1.4e-24 115.9 86 67.4
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 1.4e-24 115.9 86 70.9
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 1.4e-24 115.9 86 70.9
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 1.4e-24 115.9 86 69.8
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 1.8e-24 115.5 86 69.8
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 1.8e-24 115.5 86 69.8
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 1.8e-24 115.5 86 68.6
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 1.8e-24 115.5 86 69.8
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 1.8e-24 115.5 86 66.3
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 2.4e-24 115.2 92 67.4
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 2.4e-24 115.2 86 70.9
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 2.4e-24 115.2 86 70.9
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 2.4e-24 115.2 86 68.6
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 3.1e-24 114.8 92 67.4
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 3.1e-24 114.8 86 68.6
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 3.1e-24 114.8 86 70.9
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 3.1e-24 114.8 86 68.6
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 4.0e-24 114.4 92 66.3
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 4.0e-24 114.4 92 66.3
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 4.0e-24 114.4 86 70.9
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 4.0e-24 114.4 92 66.3
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 4.0e-24 114.4 86 70.9
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 4.0e-24 114.4 86 68.6
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 4.0e-24 114.4 86 69.8
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 4.0e-24 114.4 86 68.6
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 4.0e-24 114.4 86 68.6
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 5.2e-24 114.0 86 70.9
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 5.2e-24 114.0 86 68.6
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 5.2e-24 114.0 92 64.1
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 5.2e-24 114.0 86 69.8
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 6.9e-24 113.6 86 67.4
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 6.9e-24 113.6 86 67.4
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 9.0e-24 113.2 86 67.4
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 1.2e-23 112.8 92 65.2
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 1.2e-23 112.8 92 66.3
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 1.2e-23 112.8 86 67.4
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 1.5e-23 112.5 86 67.4
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 1.5e-23 112.5 86 67.4
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 1.5e-23 112.5 91 65.9
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 1.5e-23 112.5 86 69.8
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.5e-23 112.5 86 68.6
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 2.0e-23 112.1 86 69.8
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 2.0e-23 112.1 86 67.4
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 2.0e-23 112.1 86 66.3
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 2.0e-23 112.1 92 64.1
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 2.6e-23 111.7 86 69.8
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 2.6e-23 111.7 86 68.6
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 2.6e-23 111.7 86 68.6
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 3.4e-23 111.3 86 68.6
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 3.4e-23 111.3 86 66.3
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 3.4e-23 111.3 92 66.3
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 4.4e-23 110.9 86 67.4
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 4.4e-23 110.9 86 67.4
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 7.6e-23 110.2 86 67.4
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 7.6e-23 110.2 86 65.1
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 7.6e-23 110.2 86 65.1
FAN06G0644 Fragaria x ananassa HOM05D003698 ORTHO05D004320 7.6e-23 110.2 86 65.1
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 7.6e-23 110.2 86 65.1
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 9.9e-23 109.8 86 65.1
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 1.3e-22 109.4 92 64.1
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 1.3e-22 109.4 92 64.1
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 1.3e-22 109.4 86 66.3
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 1.7e-22 109.0 86 64.0
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 1.7e-22 109.0 86 66.3
MSTRG.28213 Avicennia marina HOM05D003698 ORTHO05D004320 2.2e-22 108.6 86 66.3
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 2.2e-22 108.6 86 68.6
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 2.9e-22 108.2 86 64.0
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 2.9e-22 108.2 86 66.3
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 2.9e-22 108.2 86 66.3
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 3.8e-22 107.8 86 65.1
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 3.8e-22 107.8 92 64.1
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 3.8e-22 107.8 92 64.1
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 3.8e-22 107.8 86 65.1
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 3.8e-22 107.8 86 65.1
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 3.8e-22 107.8 85 64.7
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 4.9e-22 107.5 86 65.1
MBI17_g19515_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 4.9e-22 107.5 86 64.0
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 6.4e-22 107.1 68 72.1
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 6.4e-22 107.1 86 62.8
Cpa.g.c40434 Carica papaya HOM05D003698 ORTHO05D004320 8.4e-22 106.7 86 65.1
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 1.1e-21 106.3 86 64.0
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 1.1e-21 106.3 86 62.8
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 1.1e-21 106.3 82 67.1
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 1.4e-21 105.9 86 62.8
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 1.4e-21 105.9 86 64.0
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 1.4e-21 105.9 86 65.1
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 1.9e-21 105.5 87 65.5
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 2.4e-21 105.1 102 57.8
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 3.2e-21 104.8 91 62.6
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 5.4e-21 104.0 86 62.8
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 5.4e-21 104.0 81 66.7
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 9.3e-21 103.2 86 61.6
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 1.2e-20 102.8 86 61.6
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 1.2e-20 102.8 90 61.1
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 2.1e-20 102.1 84 63.1
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 2.1e-20 102.1 86 62.8
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 2.7e-20 101.7 72 75.0
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 3.5e-20 101.3 72 72.2
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 3.5e-20 101.3 82 63.4
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 6.0e-20 100.5 82 63.4
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 1.7e-19 99.0 84 63.1
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 2.3e-19 98.6 82 62.2
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 5.1e-19 97.4 82 62.2
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 6.6e-19 97.1 80 65.0
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 2.5e-18 95.1 103 51.5
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 5.6e-18 94.0 81 61.7
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 5.6e-18 94.0 81 61.7
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 1.6e-17 92.4 78 61.5
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 8.1e-17 90.1 79 60.8
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 2.4e-16 88.6 74 64.9
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 6.9e-16 87.0 79 58.2
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 4.9e-14 80.9 64 65.6
CSS0029944 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.4e-13 79.3 71 59.2
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 2.4e-13 78.6 63 63.5
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 4.2e-13 77.8 72 56.9
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 3.5e-12 74.7 75 50.7
CAN.G134.80 Capsicum annuum HOM05D003698 ORTHO05D004320 1.8e-11 72.4 62 64.5
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 8.7e-11 70.1 62 56.5
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.1e-10 69.7 58 62.1
Nn6g33536 Nelumbo nucifera HOM05D003698 ORTHO05D004320 2.5e-10 68.6 61 63.9
Haze_05812 Corylus avellana HOM05D003698 ORTHO05D004320 1.3e-09 66.2 44 68.2
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 2.8e-09 65.1 38 78.9
PGR044G1122 Punica granatum HOM05D003698 ORTHO05D004320 2.2e-06 55.5 38 71.1
Haze_02709 Corylus avellana HOM05D050389 ORTHO05D165297 8.4e-06 53.5 38 68.4


User provided reference genes

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