Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18226 Trifolium pratense HOM05D003411 ORTHO05D003914 7.1e-59 230.3 111 100.0
Glyma.08G108000 Glycine max HOM05D003411 ORTHO05D003914 4.2e-27 124.8 67 82.1
Glyma.05G151300 Glycine max HOM05D003411 ORTHO05D003914 9.3e-27 123.6 67 80.6
CARHR220050 Cardamine hirsuta HOM05D003411 ORTHO05D003914 1.6e-26 122.9 78 67.9
Thecc.04G193400 Theobroma cacao HOM05D003411 ORTHO05D003914 2.7e-26 122.1 67 79.1
vmacro00433 Vaccinium macrocarpon HOM05D003411 ORTHO05D003914 2.7e-26 122.1 67 76.1
BcaC07g37715 Brassica carinata HOM05D003411 ORTHO05D003914 4.6e-26 121.3 78 66.7
A08p10280 Brassica napus HOM05D003411 ORTHO05D003914 4.6e-26 121.3 78 66.7
BraA08t33024Z Brassica rapa HOM05D003411 ORTHO05D003914 4.6e-26 121.3 78 66.7
Duzib151G0297 Durio zibethinus HOM05D003411 ORTHO05D003914 4.6e-26 121.3 76 69.7
Sp7g11850 Schrenkiella parvula HOM05D003411 ORTHO05D003914 4.6e-26 121.3 78 66.7
AUR62018543 Chenopodium quinoa HOM05D003411 ORTHO05D003914 6.0e-26 120.9 67 76.1
Gohir.A02G018300 Gossypium hirsutum HOM05D003411 ORTHO05D003914 6.0e-26 120.9 67 77.6
Gohir.A10G128900 Gossypium hirsutum HOM05D003411 ORTHO05D003914 6.0e-26 120.9 67 77.6
Gohir.D02G021500 Gossypium hirsutum HOM05D003411 ORTHO05D003914 6.0e-26 120.9 67 77.6
Gorai.005G027100 Gossypium raimondii HOM05D003411 ORTHO05D003914 6.0e-26 120.9 67 77.6
SalBow3G1551 Salvia bowleyana HOM05D003411 ORTHO05D003914 6.0e-26 120.9 67 74.6
Ah.13g077880 Amaranthus hybridus HOM05D003411 ORTHO05D003914 7.9e-26 120.6 67 76.1
arahy.Tifrunner.gnm1.ann1.EMW6AM Arachis hypogaea HOM05D003411 ORTHO05D003914 7.9e-26 120.6 67 77.6
BolC8t48094H Brassica oleracea HOM05D003411 ORTHO05D003914 7.9e-26 120.6 78 66.7
Gorai.005G027000 Gossypium raimondii HOM05D003411 ORTHO05D003914 7.9e-26 120.6 67 76.1
ATR0602G172 Amborella trichopoda HOM05D003411 ORTHO05D003914 1.8e-25 119.4 67 79.1
BcaB04g18108 Brassica carinata HOM05D003411 ORTHO05D003914 1.8e-25 119.4 78 65.4
Hma1.2p1_2624F.1_g325610 Hydrangea macrophylla HOM05D003411 ORTHO05D003914 1.8e-25 119.4 67 74.6
Rhsim09G0061400 Rhododendron simsii HOM05D003411 ORTHO05D003914 1.8e-25 119.4 71 70.4
Actinidia35836 Actinidia chinensis HOM05D003411 ORTHO05D003914 2.3e-25 119.0 67 71.6
AUR62020875 Chenopodium quinoa HOM05D003411 ORTHO05D003914 2.3e-25 119.0 67 74.6
Nn1g08155 Nelumbo nucifera HOM05D003411 ORTHO05D003914 2.3e-25 119.0 67 76.1
QL06p026812 Quercus lobata HOM05D003411 ORTHO05D003914 2.3e-25 119.0 67 76.1
arahy.Tifrunner.gnm1.ann1.E7M6AK Arachis hypogaea HOM05D003411 ORTHO05D003914 3.0e-25 118.6 67 76.1
Gohir.D02G021700 Gossypium hirsutum HOM05D003411 ORTHO05D003914 3.0e-25 118.6 67 74.6
Gorai.005G027200 Gossypium raimondii HOM05D003411 ORTHO05D003914 3.0e-25 118.6 67 74.6
Atru.chr4.1551 Acer truncatum HOM05D003411 ORTHO05D003914 3.9e-25 118.2 67 73.1
AL7G42390 Arabidopsis lyrata HOM05D003411 ORTHO05D003914 3.9e-25 118.2 77 64.9
BolC8t48088H Brassica oleracea HOM05D003411 ORTHO05D003914 3.9e-25 118.2 78 64.1
Cfa008639 Carpinus fangiana HOM05D003411 ORTHO05D003914 3.9e-25 118.2 67 77.6
QL07p010164 Quercus lobata HOM05D003411 ORTHO05D003914 3.9e-25 118.2 67 76.1
VMungo1383G0705 Vigna mungo HOM05D003411 ORTHO05D003914 3.9e-25 118.2 67 76.1
A08p10260 Brassica napus HOM05D003411 ORTHO05D003914 5.1e-25 117.9 67 73.1
BraA08t33023Z Brassica rapa HOM05D003411 ORTHO05D003914 5.1e-25 117.9 67 73.1
Ciclev10004848m.g Citrus clementina HOM05D003411 ORTHO05D003914 6.7e-25 117.5 114 54.4
Gohir.D02G021800 Gossypium hirsutum HOM05D003411 ORTHO05D003914 6.7e-25 117.5 67 71.6
Gohir.D10G137200 Gossypium hirsutum HOM05D003411 ORTHO05D003914 6.7e-25 117.5 67 74.6
Gorai.005G027300 Gossypium raimondii HOM05D003411 ORTHO05D003914 6.7e-25 117.5 67 71.6
Gorai.011G152400 Gossypium raimondii HOM05D003411 ORTHO05D003914 6.7e-25 117.5 67 74.6
Sabra17G0053800 Salix brachista HOM05D003411 ORTHO05D003914 6.7e-25 117.5 67 76.1
BcaB02g08636 Brassica carinata HOM05D003411 ORTHO05D003914 8.7e-25 117.1 77 64.9
Carub.0007s2838 Capsella rubella HOM05D003411 ORTHO05D003914 8.7e-25 117.1 77 64.9
Migut.N00427 Erythranthe guttata HOM05D003411 ORTHO05D003914 8.7e-25 117.1 67 71.6
Glyma.18G002800 Glycine max HOM05D003411 ORTHO05D003914 8.7e-25 117.1 70 72.9
Potri.017G060000 Populus trichocarpa HOM05D003411 ORTHO05D003914 8.7e-25 117.1 67 74.6
Prupe.1G167300 Prunus persica HOM05D003411 ORTHO05D003914 8.7e-25 117.1 67 73.1
Sp7g11830 Schrenkiella parvula HOM05D003411 ORTHO05D003914 8.7e-25 117.1 67 71.6
Aqoxy2G03916 Aquilegia oxysepala HOM05D003411 ORTHO05D003914 1.1e-24 116.7 67 71.6
BcaC02g09367 Brassica carinata HOM05D003411 ORTHO05D003914 1.1e-24 116.7 67 71.6
BcaC07g37697 Brassica carinata HOM05D003411 ORTHO05D003914 1.1e-24 116.7 67 71.6
A04p08110 Brassica napus HOM05D003411 ORTHO05D003914 1.1e-24 116.7 67 71.6
C04p41770 Brassica napus HOM05D003411 ORTHO05D003914 1.1e-24 116.7 67 71.6
BolC4t25759H Brassica oleracea HOM05D003411 ORTHO05D003914 1.1e-24 116.7 67 71.6
BraA04t16500Z Brassica rapa HOM05D003411 ORTHO05D003914 1.1e-24 116.7 67 71.6
A04p08100 Brassica napus HOM05D003411 ORTHO05D003914 1.5e-24 116.3 77 64.9
BraA04t16498Z Brassica rapa HOM05D003411 ORTHO05D003914 1.5e-24 116.3 77 64.9
Glyma.11G254300 Glycine max HOM05D003411 ORTHO05D003914 1.5e-24 116.3 67 74.6
Gohir.D02G021600 Gossypium hirsutum HOM05D003411 ORTHO05D003914 1.5e-24 116.3 67 74.6
Hma1.2p1_0349F.1_g131970 Hydrangea macrophylla HOM05D003411 ORTHO05D003914 1.5e-24 116.3 65 75.4
AT4G14040 Arabidopsis thaliana HOM05D003411 ORTHO05D003914 1.9e-24 115.9 77 63.6
BcaC02g09366 Brassica carinata HOM05D003411 ORTHO05D003914 1.9e-24 115.9 77 64.9
BolC4t25757H Brassica oleracea HOM05D003411 ORTHO05D003914 1.9e-24 115.9 77 64.9
Duzib212G0817 Durio zibethinus HOM05D003411 ORTHO05D003914 1.9e-24 115.9 67 74.6
MBI07_g08879_MAGBIO Magnolia biondii HOM05D003411 ORTHO05D003914 1.9e-24 115.9 67 73.1
Nitab4.5_0000451g0080 Nicotiana tabacum HOM05D003411 ORTHO05D003914 1.9e-24 115.9 77 64.9
CANSAT78G0444 Cannabis sativa HOM05D003411 ORTHO05D003914 2.5e-24 115.5 67 73.1
CARHR099780 Cardamine hirsuta HOM05D003411 ORTHO05D003914 2.5e-24 115.5 67 73.1
Thhalv10025040m.g Eutrema salsugineum HOM05D003411 ORTHO05D003914 2.5e-24 115.5 77 63.6
FAN17G0403 Fragaria x ananassa HOM05D003411 ORTHO05D003914 2.5e-24 115.5 70 71.4
Peaxi162Scf00286g01031 Petunia axillaris HOM05D003411 ORTHO05D003914 2.5e-24 115.5 67 71.6
Sed0020137 Sechium edule HOM05D003411 ORTHO05D003914 2.5e-24 115.5 67 74.6
Hund19016 Selenicereus undatus HOM05D003411 ORTHO05D003914 2.5e-24 115.5 67 73.1
BcaB04g18106 Brassica carinata HOM05D003411 ORTHO05D003914 3.3e-24 115.2 67 70.1
Cc03_g09400 Coffea canephora HOM05D003411 ORTHO05D003914 3.3e-24 115.2 67 68.7
Eucgr.H02650 Eucalyptus grandis HOM05D003411 ORTHO05D003914 3.3e-24 115.2 67 73.1
Sabra16G0203800 Salix brachista HOM05D003411 ORTHO05D003914 3.3e-24 115.2 76 64.5
TPR.G28943 Trifolium pratense HOM05D003411 ORTHO05D003914 3.3e-24 115.2 67 73.1
arahy.Tifrunner.gnm1.ann1.GXY8DM Arachis hypogaea HOM05D003411 ORTHO05D003914 4.3e-24 114.8 67 71.6
CiPaw.01G115300 Carya illinoinensis HOM05D003411 ORTHO05D003914 4.3e-24 114.8 67 73.1
CiPaw.02G062900 Carya illinoinensis HOM05D003411 ORTHO05D003914 4.3e-24 114.8 67 73.1
Solyc09g092430.3 Solanum lycopersicum HOM05D003411 ORTHO05D003914 4.3e-24 114.8 67 71.6
Sopen09g035330 Solanum pennellii HOM05D003411 ORTHO05D003914 4.3e-24 114.8 67 71.6
CiPaw.02G063100 Carya illinoinensis HOM05D003411 ORTHO05D003914 5.6e-24 114.4 67 71.6
CsaV3_6G001060 Cucumis sativus L. HOM05D003411 ORTHO05D003914 5.6e-24 114.4 67 74.6
Lj6g0005715 Lotus japonicus HOM05D003411 ORTHO05D003914 5.6e-24 114.4 67 73.1
Medtr3g084410 Medicago truncatula HOM05D003411 ORTHO05D003914 5.6e-24 114.4 67 71.6
THA.LOC104822225 Tarenaya hassleriana HOM05D003411 ORTHO05D003914 5.6e-24 114.4 67 70.1
BcaB02g08638 Brassica carinata HOM05D003411 ORTHO05D003914 7.4e-24 114.0 67 70.1
C04p41760 Brassica napus HOM05D003411 ORTHO05D003914 7.4e-24 114.0 77 63.6
CSS0031323 Camellia sinensis var. sinensis HOM05D003411 ORTHO05D003914 7.4e-24 114.0 67 70.1
CAN.G1155.14 Capsicum annuum HOM05D003411 ORTHO05D003914 7.4e-24 114.0 67 71.6
CARHR220040 Cardamine hirsuta HOM05D003411 ORTHO05D003914 7.4e-24 114.0 77 63.6
Gohir.A02G018500 Gossypium hirsutum HOM05D003411 ORTHO05D003914 7.4e-24 114.0 67 70.1
Potri.001G321600 Populus trichocarpa HOM05D003411 ORTHO05D003914 7.4e-24 114.0 67 73.1
Sc07g0006160 Simmondsia chinensis HOM05D003411 ORTHO05D003914 7.4e-24 114.0 67 70.1
Cpa.g.sc157.38 Carica papaya HOM05D003411 ORTHO05D003914 9.6e-24 113.6 67 71.6
Ca_16422_v3 Cicer arietinum L. HOM05D003411 ORTHO05D003914 9.6e-24 113.6 67 74.6
FvH4_4g13170 Fragaria vesca HOM05D003411 ORTHO05D003914 9.6e-24 113.6 70 71.4
FAN07G1736 Fragaria x ananassa HOM05D003411 ORTHO05D003914 1.3e-23 113.2 70 70.0
Manes.01G003200 Manihot esculenta HOM05D003411 ORTHO05D003914 1.3e-23 113.2 67 73.1
SHI06459 Sapria himalayana HOM05D003411 ORTHO05D003914 1.3e-23 113.2 67 73.1
ClCG06G003230 Citrullus lanatus HOM05D003411 ORTHO05D003914 1.6e-23 112.8 65 73.8
Thhalv10024991m.g Eutrema salsugineum HOM05D003411 ORTHO05D003914 1.6e-23 112.8 67 70.1
MD04G1018500 Malus domestica HOM05D003411 ORTHO05D003914 1.6e-23 112.8 118 50.8
PSO017G4415 Papaver somniferum HOM05D003411 ORTHO05D003914 1.6e-23 112.8 67 70.1
PSO063G6832 Papaver somniferum HOM05D003411 ORTHO05D003914 1.6e-23 112.8 67 68.7
Phvul.001G265900 Phaseolus vulgaris HOM05D003411 ORTHO05D003914 1.6e-23 112.8 67 71.6
THA.LOC104804791 Tarenaya hassleriana HOM05D003411 ORTHO05D003914 1.6e-23 112.8 67 67.2
GSVIVG01021049001 Vitis vinifera HOM05D003411 ORTHO05D003914 1.6e-23 112.8 67 70.1
MSTRG.9788 Avicennia marina HOM05D003411 ORTHO05D003914 2.1e-23 112.5 67 68.7
PSO017G0142 Papaver somniferum HOM05D003411 ORTHO05D003914 2.1e-23 112.5 67 70.1
PSO063G3966 Papaver somniferum HOM05D003411 ORTHO05D003914 2.1e-23 112.5 67 70.1
TAR636G0144 Trochodendron aralioides HOM05D003411 ORTHO05D003914 2.1e-23 112.5 67 70.1
Aa31LG9G3320 Aethionema arabicum HOM05D003411 ORTHO05D003914 2.8e-23 112.1 67 68.7
Thhalv10002510m.g Eutrema salsugineum HOM05D003411 ORTHO05D003914 2.8e-23 112.1 67 71.6
FAN12G0475 Fragaria x ananassa HOM05D003411 ORTHO05D003914 2.8e-23 112.1 70 71.4
PGR083G0313 Punica granatum HOM05D003411 ORTHO05D003914 2.8e-23 112.1 67 71.6
PGSC0003DMG400020582 Solanum tuberosum HOM05D003411 ORTHO05D003914 2.8e-23 112.1 67 70.1
BcaB04g18107 Brassica carinata HOM05D003411 ORTHO05D003914 3.7e-23 111.7 76 61.8
EL10Ac3g07442 Beta vulgaris HOM05D003411 ORTHO05D003914 4.8e-23 111.3 67 70.1
RcHm_v2.0_Chr4g0413261 Rosa chinensis HOM05D003411 ORTHO05D003914 4.8e-23 111.3 66 71.2
SGA_v2.0_scaffold19G08787 Striga asiatica HOM05D003411 ORTHO05D003914 4.8e-23 111.3 67 67.2
AT4G14030 Arabidopsis thaliana HOM05D003411 ORTHO05D003914 6.2e-23 110.9 67 67.2
COL.COLO4_05435 Corchorus olitorius HOM05D003411 ORTHO05D003914 6.2e-23 110.9 67 71.6
AT3G23800 Arabidopsis thaliana HOM05D003411 ORTHO05D003914 8.2e-23 110.5 67 71.6
BcaB06g26541 Brassica carinata HOM05D003411 ORTHO05D003914 8.2e-23 110.5 67 70.1
AL7G42400 Arabidopsis lyrata HOM05D003411 ORTHO05D003914 1.1e-22 110.2 67 65.7
A08p10270 Brassica napus HOM05D003411 ORTHO05D003914 1.4e-22 109.8 76 60.5
BolC8t48092H Brassica oleracea HOM05D003411 ORTHO05D003914 1.4e-22 109.8 76 60.5
BraA08t33025Z Brassica rapa HOM05D003411 ORTHO05D003914 1.4e-22 109.8 76 60.5
CSS0017016 Camellia sinensis var. sinensis HOM05D003411 ORTHO05D003914 1.8e-22 109.4 67 68.7
CANSAT78G1476 Cannabis sativa HOM05D003411 ORTHO05D003914 1.8e-22 109.4 66 72.7
CDE07G1304 Ceratophyllum demersum HOM05D003411 ORTHO05D003914 1.8e-22 109.4 67 68.7
unitig_62.g23161 Utricularia gibba HOM05D003411 ORTHO05D003914 1.8e-22 109.4 67 68.7
BcaC06g35570 Brassica carinata HOM05D003411 ORTHO05D003914 2.4e-22 109.0 67 68.7
A07p08590 Brassica napus HOM05D003411 ORTHO05D003914 2.4e-22 109.0 67 68.7
C07p13410 Brassica napus HOM05D003411 ORTHO05D003914 2.4e-22 109.0 67 68.7
BolC7t41836H Brassica oleracea HOM05D003411 ORTHO05D003914 2.4e-22 109.0 67 68.7
BraA07t28648Z Brassica rapa HOM05D003411 ORTHO05D003914 2.4e-22 109.0 67 68.7
HanXRQChr07g0185571 Helianthus annuus HOM05D003411 ORTHO05D003914 2.4e-22 109.0 67 67.2
Psat5g099520 Pisum sativum HOM05D003411 ORTHO05D003914 3.1e-22 108.6 66 69.7
Carub.0007s2839 Capsella rubella HOM05D003411 ORTHO05D003914 4.0e-22 108.2 76 59.2
Dinv18405 Davidia involucrata HOM05D003411 ORTHO05D003914 4.0e-22 108.2 67 67.2
Carub.0003s2410 Capsella rubella HOM05D003411 ORTHO05D003914 5.3e-22 107.8 67 68.7
MELO3C021162.2 Cucumis melo HOM05D003411 ORTHO05D003914 6.9e-22 107.5 67 70.1
ECA233G4116 Erigeron canadensis HOM05D003411 ORTHO05D003914 6.9e-22 107.5 67 65.7
SEGI_38348 Sequoiadendron giganteum HOM05D003411 ORTHO05D003914 6.9e-22 107.5 77 62.3
Zm00001eb143460 Zea mays HOM05D003411 ORTHO05D003914 6.9e-22 107.5 67 68.7
Os01g0916400 Oryza sativa ssp. japonica HOM05D003411 ORTHO05D003914 1.2e-21 106.7 67 67.2
Zm00001eb339400 Zea mays HOM05D003411 ORTHO05D003914 1.2e-21 106.7 67 68.7
Lalb_Chr23g0278281 Lupinus albus HOM05D003411 ORTHO05D003914 1.5e-21 106.3 67 67.2
TWI53G0146 Tripterygium wilfordii HOM05D003411 ORTHO05D003914 1.5e-21 106.3 115 49.6
HanXRQChr02g0058461 Helianthus annuus HOM05D003411 ORTHO05D003914 2.0e-21 105.9 67 64.2
CDE04G2948 Ceratophyllum demersum HOM05D003411 ORTHO05D003914 2.6e-21 105.5 66 66.7
Lsat_1_v5_gn_6_59580 Lactuca sativa HOM05D003411 ORTHO05D003914 2.6e-21 105.5 67 64.2
Lj6C367T9 Lonicera japonica HOM05D003411 ORTHO05D003914 2.6e-21 105.5 71 60.6
DCAR_026664 Daucus carota HOM05D003411 ORTHO05D003914 3.4e-21 105.1 67 62.7
SMO230G0057 Selaginella moellendorffii HOM05D003411 ORTHO05D003914 4.5e-21 104.8 67 62.7
AagrBONN_evm.TU.Sc2ySwM_228.5065 Anthoceros agrestis HOM05D003411 ORTHO05D003914 1.7e-20 102.8 67 64.2
Zm00001eb188090 Zea mays HOM05D003411 ORTHO05D003914 1.7e-20 102.8 67 67.2
SEGI_04155 Sequoiadendron giganteum HOM05D003411 ORTHO05D003914 2.2e-20 102.4 73 63.0
Mapoly0004s0070 Marchantia polymorpha HOM05D003411 ORTHO05D003914 2.9e-20 102.1 67 64.2
Zm00001eb251140 Zea mays HOM05D003411 ORTHO05D003914 2.9e-20 102.1 67 64.2
Zm00001eb378160 Zea mays HOM05D003411 ORTHO05D003914 4.9e-20 101.3 67 65.7
Pp3c11_15680 Physcomitrium patens HOM05D003411 ORTHO05D003914 1.1e-19 100.1 76 56.6
CSS0027208 Camellia sinensis var. sinensis HOM05D003411 ORTHO05D003914 2.5e-19 99.0 65 66.2
SalBow8G4879 Salvia bowleyana HOM05D003411 ORTHO05D003914 1.5e-16 89.7 66 60.6
Cre03.g166050 Chlamydomonas reinhardtii HOM05D003411 ORTHO05D003914 4.3e-16 88.2 82 47.6
Zm00001eb364800 Zea mays HOM05D003411 ORTHO05D003914 6.9e-14 80.9 51 64.7
Zm00001eb324120 Zea mays HOM05D000238 ORTHO05D011419 9.0e-14 80.5 51 64.7
BcaC07g37695 Brassica carinata HOM05D003411 ORTHO05D003914 3.8e-12 75.1 45 64.4
BcaC07g37696 Brassica carinata HOM05D003411 ORTHO05D003914 8.5e-12 73.9 45 62.2
Actinidia21264 Actinidia chinensis HOM05D003411 ORTHO05D003914 2.3e-09 65.9 36 66.7
Haze_11665 Corylus avellana HOM05D003411 ORTHO05D003914 7.4e-08 60.8 34 73.5


User provided reference genes

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