Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 8.5e-279 963.0 475 100.0
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 1.6e-240 835.9 432 94.0
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 5.8e-235 817.4 430 91.9
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 2.4e-228 795.4 449 87.5
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 8.9e-228 793.5 430 87.7
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 2.9e-226 788.5 430 87.0
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 3.0e-223 778.5 432 86.1
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 1.3e-221 773.1 428 86.0
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 3.1e-220 768.5 428 85.3
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 8.4e-218 760.4 433 83.6
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 1.7e-215 752.7 430 82.1
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 3.0e-215 751.9 430 82.1
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 1.1e-214 750.0 430 81.4
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 1.9e-214 749.2 430 81.6
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 7.4e-214 747.3 434 80.9
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.4e-212 743.0 430 81.2
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 2.9e-210 735.3 430 80.9
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 4.9e-210 734.6 431 81.2
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 1.1e-209 733.4 429 79.7
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 1.1e-209 733.4 431 79.8
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.9e-209 732.6 430 80.2
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 1.2e-208 729.9 431 78.9
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 6.0e-208 727.6 430 77.9
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 1.8e-207 726.1 429 79.0
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 1.8e-207 726.1 430 78.4
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 1.8e-207 726.1 429 79.7
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 3.0e-207 725.3 431 78.9
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 3.0e-207 725.3 427 79.4
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 3.9e-207 724.9 414 82.9
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 8.7e-207 723.8 430 79.8
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 1.9e-206 722.6 432 77.8
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 3.3e-206 721.8 431 78.7
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 1.6e-205 719.5 430 78.1
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 2.1e-205 719.2 428 79.2
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.1e-204 716.8 430 78.6
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 1.8e-204 716.1 427 78.9
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 5.3e-204 714.5 432 78.2
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 5.3e-204 714.5 412 82.3
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 1.2e-203 713.4 431 77.7
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 4.5e-203 711.4 432 76.4
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 7.6e-203 710.7 449 74.8
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 1.3e-202 709.9 434 75.6
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 1.3e-202 709.9 427 78.5
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 1.7e-202 709.5 430 77.9
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 3.8e-202 708.4 430 77.4
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 6.5e-202 707.6 437 76.4
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 8.4e-202 707.2 429 77.4
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 8.4e-202 707.2 428 78.0
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 1.4e-201 706.4 429 77.4
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 7.1e-201 704.1 428 76.2
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 7.1e-201 704.1 429 76.5
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 2.7e-200 702.2 430 77.0
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 3.5e-200 701.8 429 76.7
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 6.0e-200 701.0 427 77.0
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 1.3e-199 699.9 427 78.0
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 1.3e-199 699.9 432 74.8
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 3.9e-199 698.4 428 76.6
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 1.5e-198 696.4 430 75.6
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 1.5e-198 696.4 429 76.0
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 1.3e-197 693.3 428 76.4
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 1.3e-197 693.3 432 75.5
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 2.8e-197 692.2 428 76.2
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 3.7e-197 691.8 432 74.8
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 3.7e-197 691.8 428 76.2
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 4.8e-197 691.4 439 74.5
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 8.2e-197 690.6 429 76.2
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 1.1e-196 690.3 418 77.3
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 6.9e-196 687.6 429 76.0
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 1.5e-195 686.4 413 78.2
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 2.0e-195 686.0 435 74.0
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 2.6e-195 685.6 430 74.4
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 1.3e-194 683.3 430 73.5
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 1.3e-194 683.3 394 79.9
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 1.7e-194 682.9 437 73.5
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 1.7e-194 682.9 428 75.7
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 8.5e-194 680.6 435 73.6
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.4e-193 679.9 429 75.1
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 1.9e-193 679.5 413 77.7
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 2.5e-193 679.1 406 77.8
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 5.5e-193 677.9 420 75.7
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 6.1e-192 674.5 412 76.5
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 6.7e-191 671.0 415 75.7
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 8.2e-189 664.1 455 70.5
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 2.4e-188 662.5 446 72.4
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 7.7e-187 657.5 439 72.2
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 9.4e-185 650.6 412 74.5
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 2.3e-183 646.0 473 67.7
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 3.0e-183 645.6 429 69.9
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 1.3e-181 640.2 429 69.9
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 1.1e-180 637.1 484 66.7
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 7.9e-176 620.9 429 67.1
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 3.0e-175 619.0 389 75.3
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.1e-174 617.1 429 66.4
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 7.0e-172 607.8 443 67.0
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 3.0e-167 592.4 474 60.1
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 2.0e-166 589.7 385 73.0
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 2.4e-164 582.8 414 68.6
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 7.0e-164 581.3 422 69.2
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 2.2e-162 576.2 365 77.0
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 5.0e-162 575.1 540 56.3
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 2.5e-161 572.8 375 70.7
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 4.8e-157 558.5 356 74.7
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 4.5e-155 552.0 431 62.6
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 3.2e-153 545.8 429 58.7
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 5.5e-153 545.0 430 60.0
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 2.0e-150 536.6 430 62.1
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 1.3e-149 533.9 455 59.6
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 4.1e-148 528.9 427 58.3
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 4.0e-143 512.3 453 55.4
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 2.9e-141 506.1 413 61.0
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.6e-139 500.4 435 55.6
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 4.1e-132 475.7 436 53.0
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 2.3e-122 443.4 270 76.3
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 1.1e-121 441.0 399 53.6
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 3.8e-117 426.0 246 77.6
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 3.2e-100 369.8 236 76.3
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 1.8e-98 364.0 368 46.7
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.1e-97 361.3 195 82.6
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 1.1e-97 361.3 445 43.8
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 1.4e-95 354.4 537 39.1
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 3.1e-95 353.2 196 80.1
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 2.4e-92 343.6 280 60.7
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 9.6e-89 331.6 235 70.2
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 1.3e-61 241.5 157 72.6
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 3.0e-58 230.3 197 59.4
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 3.5e-54 216.9 171 60.8
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 8.8e-50 202.2 189 55.0
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 1.1e-47 195.3 242 45.0
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 1.7e-45 188.0 423 31.0
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 2.1e-43 181.0 145 60.7
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 1.4e-42 178.3 91 81.3
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 4.0e-42 176.8 187 49.2
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 6.8e-42 176.0 152 57.2
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 2.0e-41 174.5 103 70.9
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 9.1e-39 165.6 132 57.6
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 2.6e-33 147.5 145 53.1
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 1.1e-31 142.1 88 70.5
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 1.8e-31 141.4 86 70.9
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 3.8e-29 133.7 125 54.4
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 2.1e-27 127.9 106 62.3
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 3.0e-26 124.0 122 52.5
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 4.1e-23 113.6 126 49.2
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.8e-19 100.9 98 51.0
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 1.5e-17 95.1 67 71.6
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 3.4e-17 94.0 58 70.7
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 7.3e-12 76.3 65 63.1
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 4.7e-11 73.6 71 49.3
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 2.0e-09 68.2 45 71.1
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 1.3e-08 65.5 51 60.8
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 1.4e-07 62.0 82 41.5
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 2.4e-07 61.2 55 54.5
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 2.4e-07 61.2 55 54.5
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 7.1e-07 59.7 53 54.7
BolC1t01386H Brassica oleracea HOM05D004472 ORTHO05D041278 7.8e-06 56.2 31 80.6
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 7.8e-06 56.2 40 60.0


User provided reference genes

Program Settings