Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 1.4e-157 559.7 310 100.0
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 3.9e-107 392.1 310 78.7
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 2.8e-97 359.4 315 71.1
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 2.6e-90 336.3 330 67.0
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 2.8e-81 306.2 350 58.3
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 7.7e-71 271.6 351 57.3
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 9.4e-69 264.6 357 52.1
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 1.8e-67 260.4 352 53.7
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 2.7e-63 246.5 364 52.2
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 1.0e-62 244.6 363 52.1
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 1.3e-62 244.2 357 51.5
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 3.6e-60 236.1 366 51.1
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 4.9e-57 225.7 317 49.2
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 6.3e-57 225.3 352 52.3
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 2.4e-56 223.4 362 51.1
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 1.3e-54 217.6 363 46.0
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 6.6e-54 215.3 352 44.6
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 8.6e-54 214.9 370 45.7
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 7.3e-53 211.8 376 44.4
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 7.3e-53 211.8 363 49.0
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 1.2e-52 211.1 366 51.4
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 2.1e-52 210.3 368 45.4
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 2.8e-52 209.9 360 46.1
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 8.0e-52 208.4 374 46.8
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 8.0e-52 208.4 398 44.7
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 8.0e-52 208.4 341 44.9
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 1.4e-51 207.6 358 46.9
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 1.8e-51 207.2 374 47.1
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.3e-51 206.8 375 45.9
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 3.0e-51 206.5 384 45.3
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 9.8e-50 201.4 376 42.3
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 1.3e-49 201.1 367 44.4
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 1.3e-49 201.1 371 43.1
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.7e-49 200.7 378 47.4
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 4.9e-49 199.1 381 49.3
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 6.4e-49 198.7 358 45.3
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.8e-48 197.2 359 44.3
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 3.2e-48 196.4 366 44.5
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 5.4e-48 195.7 376 49.5
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 1.6e-47 194.1 326 45.4
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 2.0e-47 193.7 378 41.8
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 4.6e-47 192.6 387 41.6
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 4.6e-47 192.6 363 44.1
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 2.3e-46 190.3 370 44.6
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 3.0e-46 189.9 368 45.7
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 3.9e-46 189.5 363 41.9
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 6.6e-46 188.7 389 44.0
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.5e-45 187.6 359 40.4
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.9e-45 187.2 349 43.6
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 1.9e-45 187.2 374 48.9
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 2.5e-45 186.8 380 44.2
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 3.3e-45 186.4 362 42.5
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 3.3e-45 186.4 378 41.0
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 7.3e-45 185.3 359 43.5
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 9.5e-45 184.9 357 44.8
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 1.6e-44 184.1 378 45.0
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 3.6e-44 183.0 342 43.9
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 3.1e-43 179.9 324 40.7
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 3.1e-43 179.9 332 44.3
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 4.0e-43 179.5 372 47.0
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 5.2e-43 179.1 365 44.4
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 6.8e-43 178.7 406 38.9
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 1.2e-42 177.9 365 42.2
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 3.4e-42 176.4 343 39.1
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 5.8e-42 175.6 372 44.1
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 9.8e-42 174.9 394 41.4
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 9.8e-42 174.9 371 39.1
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.7e-41 174.1 375 44.0
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 2.2e-41 173.7 357 38.7
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 4.9e-41 172.6 380 42.6
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 8.3e-41 171.8 372 45.2
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 8.3e-41 171.8 343 42.9
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 7.0e-40 168.7 350 43.7
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 2.1e-39 167.2 356 41.9
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 2.1e-39 167.2 358 39.4
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.7e-39 166.8 327 42.8
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 3.5e-39 166.4 358 43.9
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 6.0e-39 165.6 374 39.8
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 7.8e-39 165.2 372 43.8
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 1.3e-38 164.5 375 43.5
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 2.3e-38 163.7 371 40.7
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 3.0e-38 163.3 353 39.9
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.1e-37 161.4 344 45.3
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 1.5e-37 161.0 372 41.4
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 2.5e-37 160.2 390 41.8
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 5.6e-37 159.1 358 36.6
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.6e-37 159.1 358 39.1
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 5.6e-37 159.1 336 41.7
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 9.5e-37 158.3 330 42.1
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 1.2e-36 157.9 361 45.7
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.6e-36 157.5 332 41.0
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.7e-36 156.0 337 39.5
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 1.1e-35 154.8 408 35.5
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.5e-34 151.0 333 36.9
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.5e-34 151.0 377 39.0
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 2.0e-34 150.6 316 46.2
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.4e-34 149.8 356 42.4
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 7.5e-34 148.7 353 40.2
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 7.5e-34 148.7 358 43.0
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 9.9e-34 148.3 353 41.1
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 1.7e-33 147.5 356 42.4
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 2.2e-33 147.1 349 38.1
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 4.9e-33 146.0 332 39.5
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 4.9e-33 146.0 353 40.5
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 6.4e-33 145.6 357 38.4
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 1.4e-32 144.4 330 40.6
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 2.4e-32 143.7 328 42.7
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 9.2e-32 141.7 351 34.5
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.2e-31 141.4 354 36.2
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 1.6e-31 141.0 360 37.8
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.1e-31 140.6 357 38.1
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 2.1e-31 140.6 342 38.6
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.5e-31 139.8 362 41.4
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 6.0e-31 139.0 352 40.6
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 1.7e-30 137.5 327 42.8
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 3.9e-30 136.3 358 40.2
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 3.9e-30 136.3 314 40.4
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 1.5e-29 134.4 348 41.7
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 9.5e-29 131.7 382 37.4
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 1.6e-28 131.0 357 36.7
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 2.8e-28 130.2 355 39.2
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.4e-27 127.9 283 41.0
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.4e-27 127.9 361 33.5
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 1.8e-27 127.5 344 39.0
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 8.9e-27 125.2 344 33.1
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 2.0e-26 124.0 308 34.7
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 4.4e-26 122.9 247 42.5
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 5.8e-26 122.5 325 32.6
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.8e-26 122.5 311 36.7
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 3.8e-25 119.8 320 36.2
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.1e-24 118.2 311 35.4
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.4e-24 117.9 374 33.2
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 3.2e-24 116.7 333 34.2
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 5.4e-24 115.9 310 36.1
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 9.2e-24 115.2 346 33.2
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 1.2e-23 114.8 338 32.2
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 3.5e-23 113.2 304 34.9
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 1.7e-22 110.9 328 37.2
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 1.5e-21 107.8 367 33.8
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 3.3e-21 106.7 159 53.5
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 5.6e-21 105.9 352 34.1
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 1.6e-20 104.4 288 34.7
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 4.0e-19 99.8 323 31.9
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 2.6e-18 97.1 272 36.4
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 9.9e-18 95.1 262 35.5
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 3.8e-17 93.2 241 35.7
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 4.9e-17 92.8 213 42.3
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 1.9e-16 90.9 374 35.6
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 2.4e-16 90.5 242 36.4
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.6e-15 87.8 239 35.1
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 1.0e-14 85.1 118 55.1
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 1.3e-14 84.7 303 31.0
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 1.3e-14 84.7 303 31.0
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.7e-14 84.3 292 28.1
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 3.9e-14 83.2 98 59.2
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 6.6e-14 82.4 299 32.4
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 6.6e-14 82.4 312 35.6
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 8.7e-14 82.0 316 32.6
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 1.5e-13 81.3 288 32.3
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 2.5e-13 80.5 200 36.0
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 4.3e-13 79.7 287 31.7
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 7.3e-13 79.0 276 31.5
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 2.8e-12 77.0 192 36.5
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.8e-12 77.0 277 33.9
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 4.0e-11 73.2 236 35.6
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 4.0e-11 73.2 302 33.1
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 4.0e-11 73.2 302 33.1
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 5.3e-11 72.8 171 39.2
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 4.5e-10 69.7 219 36.1
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 1.7e-09 67.8 294 31.0
Nn8g38913 Nelumbo nucifera HOM05D003676 ORTHO05D004262 4.9e-09 66.2 68 47.1
Nn1g06616 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.6e-07 61.2 99 48.5
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 6.7e-06 55.8 332 24.4


User provided reference genes

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