Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 7.8e-155 550.4 282 100.0
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 5.2e-66 255.4 177 77.4
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 2.9e-64 249.6 158 82.3
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 1.9e-63 246.9 154 81.8
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 9.2e-63 244.6 153 83.0
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 2.5e-60 236.5 153 79.7
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 7.3e-60 235.0 146 81.5
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 2.1e-59 233.4 156 78.2
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 3.6e-59 232.6 146 80.8
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 1.4e-58 230.7 139 83.5
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 1.5e-57 227.3 155 76.1
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 9.8e-57 224.6 156 76.3
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 2.9e-56 223.0 156 75.6
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 2.1e-54 216.9 140 75.7
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 3.5e-54 216.1 139 77.7
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 3.5e-54 216.1 179 69.3
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 4.6e-54 215.7 138 77.5
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 6.6e-53 211.8 139 75.5
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 6.6e-53 211.8 138 75.4
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 8.6e-53 211.5 167 65.9
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.5e-52 210.7 136 79.4
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.5e-52 210.7 136 79.4
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.5e-52 210.7 136 79.4
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.9e-52 210.3 136 78.7
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.9e-52 210.3 158 70.3
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 2.5e-52 209.9 141 75.2
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 2.5e-52 209.9 134 77.6
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 3.3e-52 209.5 131 77.1
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 4.3e-52 209.1 136 77.2
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 5.6e-52 208.8 161 69.6
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 7.3e-52 208.4 136 77.9
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 7.3e-52 208.4 136 77.9
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 7.3e-52 208.4 139 74.1
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 7.3e-52 208.4 132 78.0
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 7.3e-52 208.4 139 75.5
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 9.5e-52 208.0 133 76.7
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 9.5e-52 208.0 134 73.9
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 9.5e-52 208.0 141 75.2
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 9.5e-52 208.0 136 76.5
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 9.5e-52 208.0 133 77.4
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 1.2e-51 207.6 139 74.1
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.2e-51 207.6 139 74.1
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 2.1e-51 206.8 134 76.1
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 2.1e-51 206.8 139 76.3
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 3.6e-51 206.1 162 67.3
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 4.7e-51 205.7 146 71.9
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 8.1e-51 204.9 133 75.9
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 8.1e-51 204.9 134 73.9
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 1.8e-50 203.8 134 75.4
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 2.3e-50 203.4 134 73.1
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 2.3e-50 203.4 134 73.1
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.0e-50 202.6 133 75.2
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 5.2e-50 202.2 129 78.3
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 5.2e-50 202.2 136 74.3
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 5.2e-50 202.2 139 70.5
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 6.8e-50 201.8 139 71.2
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 1.2e-49 201.1 134 72.4
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 1.2e-49 201.1 134 72.4
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 2.6e-49 199.9 146 69.2
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 3.4e-49 199.5 134 72.4
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 5.8e-49 198.7 139 69.8
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 5.8e-49 198.7 178 60.7
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 1.3e-48 197.6 133 75.2
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 1.7e-48 197.2 133 72.2
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 1.7e-48 197.2 141 70.9
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 2.2e-48 196.8 144 68.8
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 2.9e-48 196.4 129 72.9
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 2.9e-48 196.4 136 70.6
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 3.7e-48 196.1 166 59.6
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 3.7e-48 196.1 166 59.6
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 3.7e-48 196.1 122 79.5
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 6.4e-48 195.3 129 71.3
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 6.4e-48 195.3 129 71.3
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 6.4e-48 195.3 171 60.8
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 8.4e-48 194.9 126 76.2
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.1e-47 194.5 134 71.6
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 1.1e-47 194.5 134 70.1
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 1.4e-47 194.1 129 72.1
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 1.4e-47 194.1 128 77.3
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 1.9e-47 193.7 134 71.6
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 1.9e-47 193.7 166 59.6
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 1.9e-47 193.7 134 71.6
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 1.9e-47 193.7 126 74.6
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 3.2e-47 193.0 126 75.4
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 3.2e-47 193.0 161 64.0
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 4.1e-47 192.6 136 69.1
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 5.4e-47 192.2 161 62.1
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 9.2e-47 191.4 164 59.8
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 9.2e-47 191.4 134 71.6
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 1.6e-46 190.7 135 71.1
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 2.1e-46 190.3 127 74.0
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 3.5e-46 189.5 164 61.6
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 3.5e-46 189.5 162 61.7
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 3.5e-46 189.5 146 66.4
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 4.6e-46 189.1 123 76.4
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 4.6e-46 189.1 134 68.7
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 4.6e-46 189.1 134 70.1
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 4.6e-46 189.1 189 56.6
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 1.7e-45 187.2 138 68.1
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.3e-45 186.8 136 70.6
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.1e-44 184.5 134 66.4
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 1.1e-44 184.5 138 65.9
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 1.5e-44 184.1 136 69.1
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 1.5e-44 184.1 110 81.8
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.5e-44 184.1 138 65.9
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.5e-44 183.3 136 69.1
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 4.3e-44 182.6 107 83.2
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 4.3e-44 182.6 138 65.2
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 4.3e-44 182.6 135 69.6
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 5.6e-44 182.2 138 64.5
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 7.3e-44 181.8 138 64.5
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 7.3e-44 181.8 187 55.1
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 7.3e-44 181.8 138 65.2
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 1.6e-43 180.6 138 65.9
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 1.6e-43 180.6 120 75.8
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 2.8e-43 179.9 131 66.4
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 3.6e-43 179.5 133 66.9
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 3.6e-43 179.5 133 66.9
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 6.2e-43 178.7 134 65.7
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 1.4e-42 177.6 136 64.0
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 2.4e-42 176.8 108 78.7
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 3.1e-42 176.4 133 66.2
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 5.2e-42 175.6 141 65.2
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 5.2e-42 175.6 107 81.3
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 6.8e-42 175.3 116 74.1
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 4.4e-41 172.6 154 59.1
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.3e-40 171.0 129 66.7
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.3e-40 171.0 129 66.7
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 2.2e-40 170.2 107 76.6
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 6.4e-40 168.7 107 75.7
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 2.4e-39 166.8 107 72.9
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 3.2e-39 166.4 134 63.4
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 5.4e-39 165.6 145 57.9
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 1.2e-38 164.5 124 68.5
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 3.5e-38 162.9 128 62.5
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.3e-37 161.0 128 64.1
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 3.0e-37 159.8 129 63.6
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 1.1e-36 157.9 127 63.8
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.1e-35 153.7 118 64.4
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 6.4e-32 142.1 94 73.4
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.9e-31 140.6 133 59.4
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 3.2e-31 139.8 114 58.8
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 3.9e-29 132.9 172 43.0
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.5e-28 131.0 95 69.5
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 3.3e-28 129.8 97 69.1
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 3.6e-27 126.3 93 71.0
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 6.2e-27 125.6 86 70.9
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 9.0e-26 121.7 75 76.0
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 4.9e-24 115.9 75 74.7
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 6.4e-24 115.5 75 77.3
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.4e-23 114.4 134 47.8
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 2.1e-22 110.5 123 43.9
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 6.0e-22 109.0 100 55.0
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 3.3e-20 103.2 98 53.1
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 3.3e-20 103.2 117 50.4
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 3.3e-20 103.2 75 68.0
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 4.3e-20 102.8 130 42.3
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 6.2e-19 99.0 110 44.5
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 1.9e-15 87.4 70 57.1
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 7.9e-14 82.0 60 63.3
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 4.8e-11 72.8 55 67.3
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 6.3e-11 72.4 46 78.3
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 3.1e-10 70.1 45 77.8
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 3.1e-10 70.1 45 77.8
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 9.0e-10 68.6 53 66.0
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 9.3e-07 58.5 111 38.7
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 1.6e-06 57.8 106 37.7
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 4.6e-06 56.2 43 67.4


User provided reference genes

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