Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 6.7e-88 327.4 174 100.0
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 5.4e-13 78.6 47 89.4
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 5.4e-13 78.6 47 89.4
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 9.2e-13 77.8 47 87.2
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.2e-12 77.4 62 69.4
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.2e-12 77.4 62 69.4
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.6e-12 77.0 47 87.2
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 1.6e-12 77.0 47 87.2
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 1.6e-12 77.0 47 85.1
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.7e-12 76.3 62 71.0
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.7e-12 76.3 62 71.0
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 2.7e-12 76.3 47 83.0
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 2.7e-12 76.3 47 85.1
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 2.7e-12 76.3 47 85.1
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 2.7e-12 76.3 62 67.7
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 2.7e-12 76.3 62 66.1
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 3.5e-12 75.9 62 69.4
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 3.5e-12 75.9 62 67.7
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 3.5e-12 75.9 47 87.2
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 3.5e-12 75.9 62 67.7
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 3.5e-12 75.9 47 87.2
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 3.5e-12 75.9 47 87.2
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 4.6e-12 75.5 62 69.4
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 4.6e-12 75.5 62 69.4
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 6.0e-12 75.1 62 67.7
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 6.0e-12 75.1 62 66.1
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 6.0e-12 75.1 47 83.0
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 7.8e-12 74.7 47 83.0
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 7.8e-12 74.7 62 67.7
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 7.8e-12 74.7 47 80.9
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 7.8e-12 74.7 47 80.9
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 7.8e-12 74.7 47 80.9
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 1.0e-11 74.3 62 67.7
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 1.0e-11 74.3 62 67.7
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.0e-11 74.3 47 80.9
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.0e-11 74.3 62 67.7
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 1.0e-11 74.3 62 66.1
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 1.0e-11 74.3 47 80.9
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.3e-11 73.9 62 67.7
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.3e-11 73.9 62 67.7
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.3e-11 73.9 56 69.6
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 1.3e-11 73.9 62 66.1
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.7e-11 73.6 62 66.1
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 1.7e-11 73.6 56 69.6
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 1.7e-11 73.6 56 69.6
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.7e-11 73.6 62 64.5
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 1.7e-11 73.6 62 67.7
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 1.7e-11 73.6 47 80.9
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 1.7e-11 73.6 62 67.7
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 1.7e-11 73.6 62 66.1
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.7e-11 73.6 62 67.7
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 2.3e-11 73.2 47 76.6
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.3e-11 73.2 62 66.1
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.3e-11 73.2 62 66.1
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 2.3e-11 73.2 86 54.7
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 2.3e-11 73.2 62 66.1
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 2.3e-11 73.2 64 62.5
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.3e-11 73.2 62 66.1
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 2.3e-11 73.2 62 66.1
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.3e-11 73.2 62 66.1
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 3.0e-11 72.8 47 80.9
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 3.0e-11 72.8 49 71.4
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 3.9e-11 72.4 86 54.7
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 3.9e-11 72.4 62 64.5
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 3.9e-11 72.4 62 64.5
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.9e-11 72.4 62 64.5
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.9e-11 72.4 62 64.5
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 3.9e-11 72.4 62 64.5
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 3.9e-11 72.4 62 66.1
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 3.9e-11 72.4 62 62.9
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 3.9e-11 72.4 62 64.5
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 5.0e-11 72.0 62 64.5
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 5.0e-11 72.0 62 64.5
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 6.6e-11 71.6 56 67.9
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 6.6e-11 71.6 56 67.9
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 6.6e-11 71.6 47 76.6
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 6.6e-11 71.6 47 76.6
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 6.6e-11 71.6 47 74.5
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 6.6e-11 71.6 47 74.5
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 6.6e-11 71.6 47 74.5
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 6.6e-11 71.6 62 64.5
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 8.6e-11 71.2 62 62.9
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 8.6e-11 71.2 62 62.9
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 8.6e-11 71.2 47 74.5
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 8.6e-11 71.2 62 62.9
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 8.6e-11 71.2 46 78.3
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.1e-10 70.9 56 67.9
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 1.1e-10 70.9 47 74.5
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 1.1e-10 70.9 56 66.1
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.5e-10 70.5 62 64.5
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 1.5e-10 70.5 47 74.5
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 1.5e-10 70.5 62 62.9
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 1.5e-10 70.5 62 61.3
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 1.9e-10 70.1 47 70.2
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 2.5e-10 69.7 62 61.3
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.5e-10 69.7 62 61.3
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 3.3e-10 69.3 61 65.6
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 3.3e-10 69.3 47 70.2
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.3e-10 69.3 62 59.7
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 3.3e-10 69.3 62 59.7
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 3.3e-10 69.3 62 59.7
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 4.3e-10 68.9 62 61.3
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 4.3e-10 68.9 47 70.2
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.3e-10 68.9 62 62.9
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.3e-10 68.9 62 62.9
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 4.3e-10 68.9 62 62.9
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 4.3e-10 68.9 62 59.7
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 4.3e-10 68.9 62 61.3
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 5.6e-10 68.6 62 59.7
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 5.6e-10 68.6 62 59.7
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 5.6e-10 68.6 62 59.7
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 5.6e-10 68.6 62 59.7
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 5.6e-10 68.6 62 59.7
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 7.3e-10 68.2 62 61.3
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 7.3e-10 68.2 47 70.2
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 7.3e-10 68.2 62 58.1
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 7.3e-10 68.2 61 62.3
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 7.3e-10 68.2 61 62.3
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 9.5e-10 67.8 62 59.7
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 9.5e-10 67.8 62 59.7
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.2e-09 67.4 62 62.9
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 2.1e-09 66.6 46 73.9
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.1e-09 66.6 47 72.3
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.1e-09 66.6 62 61.3
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 6.2e-09 65.1 65 58.5
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 6.2e-09 65.1 62 59.7
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 6.2e-09 65.1 61 59.0
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 1.1e-08 64.3 61 57.4
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.3e-08 63.2 62 58.1
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 6.8e-08 61.6 68 48.5
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 8.9e-08 61.2 47 61.7
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 1.2e-07 60.8 63 54.0
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.2e-07 60.8 42 73.8
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 1.5e-07 60.5 61 54.1
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 5.8e-07 58.5 39 74.4
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.7e-06 57.0 68 44.1
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 6.4e-06 55.1 37 73.0
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 6.4e-06 55.1 47 55.3
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 8.3e-06 54.7 62 54.8


User provided reference genes

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