Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18033 Trifolium pratense HOM05D002550 ORTHO05D048870 2.0e-33 145.2 73 100.0
Medtr2g020750 Medicago truncatula HOM05D002550 ORTHO05D003420 1.9e-20 102.1 66 84.8
Ca_13453_v3 Cicer arietinum L. HOM05D002550 ORTHO05D003420 7.2e-20 100.1 60 85.0
Ca_30648_v3 Cicer arietinum L. HOM05D002550 ORTHO05D003420 7.2e-20 100.1 60 85.0
Psat1g186280 Pisum sativum HOM05D002550 ORTHO05D003420 6.8e-18 93.6 61 80.3
Medtr2g020760 Medicago truncatula HOM05D002550 ORTHO05D003420 3.2e-15 84.7 54 81.5
Lj6g0014087 Lotus japonicus HOM05D002550 ORTHO05D003420 5.4e-15 84.0 60 71.7
Gorai.005G056300 Gossypium raimondii HOM05D002550 ORTHO05D003420 7.0e-15 83.6 56 67.9
Thecc.04G273900 Theobroma cacao HOM05D002550 ORTHO05D003420 7.0e-15 83.6 60 68.3
Lalb_Chr15g0087121 Lupinus albus HOM05D002550 ORTHO05D003420 1.7e-13 79.0 65 61.5
FAN22G0716 Fragaria x ananassa HOM05D002550 ORTHO05D003420 2.9e-13 78.2 55 70.9
Manes.15G019400 Manihot esculenta HOM05D002550 ORTHO05D003420 2.9e-13 78.2 60 63.3
Duzib151G0257 Durio zibethinus HOM05D002550 ORTHO05D003420 3.9e-13 77.8 60 66.7
Glyma.13G213000 Glycine max HOM05D002550 ORTHO05D003420 5.0e-13 77.4 60 65.0
RcHm_v2.0_Chr4g0420421 Rosa chinensis HOM05D002550 ORTHO05D013634 6.6e-13 77.0 54 70.4
MELO3C006594.2 Cucumis melo HOM05D002550 ORTHO05D003420 8.6e-13 76.6 65 61.5
FvH4_4g16850 Fragaria vesca HOM05D002550 ORTHO05D003420 8.6e-13 76.6 55 69.1
FAN07G2600 Fragaria x ananassa HOM05D002550 ORTHO05D003420 8.6e-13 76.6 55 69.1
FAN12G0079 Fragaria x ananassa HOM05D002550 ORTHO05D003420 8.6e-13 76.6 55 69.1
FAN12G3357 Fragaria x ananassa HOM05D002550 ORTHO05D003420 8.6e-13 76.6 55 69.1
FAN17G1517 Fragaria x ananassa HOM05D002550 ORTHO05D003420 8.6e-13 76.6 55 69.1
Manes.15G019300 Manihot esculenta HOM05D002550 ORTHO05D003420 8.6e-13 76.6 62 62.9
Eucgr.H03659 Eucalyptus grandis HOM05D002550 ORTHO05D003420 1.1e-12 76.3 54 75.9
Prupe.1G145300 Prunus persica HOM05D002550 ORTHO05D003420 1.1e-12 76.3 54 70.4
Gorai.006G256700 Gossypium raimondii HOM05D002550 ORTHO05D003420 1.9e-12 75.5 54 72.2
GSVIVG01017838001 Vitis vinifera HOM05D002550 ORTHO05D003420 1.9e-12 75.5 60 63.3
CiPaw.01G155800 Carya illinoinensis HOM05D002550 ORTHO05D003420 2.5e-12 75.1 54 66.7
TWI09G0813 Tripterygium wilfordii HOM05D002550 ORTHO05D003420 3.3e-12 74.7 55 65.5
Gohir.D09G233800 Gossypium hirsutum HOM05D002550 ORTHO05D003420 4.3e-12 74.3 54 72.2
CsaV3_3G014020 Cucumis sativus L. HOM05D002550 ORTHO05D003420 7.3e-12 73.6 61 63.9
Manes.03G189100 Manihot esculenta HOM05D002550 ORTHO05D003420 7.3e-12 73.6 55 65.5
Atru.chr10.1713 Acer truncatum HOM05D002550 ORTHO05D013634 9.5e-12 73.2 59 66.1
arahy.Tifrunner.gnm1.ann1.8B0AQ5 Arachis hypogaea HOM05D002550 ORTHO05D003420 9.5e-12 73.2 64 64.1
arahy.Tifrunner.gnm1.ann1.UJ2C0C Arachis hypogaea HOM05D002550 ORTHO05D003420 9.5e-12 73.2 64 64.1
Gohir.A09G232700 Gossypium hirsutum HOM05D002550 ORTHO05D003420 1.6e-11 72.4 54 70.4
Sed0023356 Sechium edule HOM05D002550 ORTHO05D003420 1.6e-11 72.4 61 62.3
Lj6C666T8 Lonicera japonica HOM05D002550 ORTHO05D003420 2.1e-11 72.0 56 66.1
ClCG05G005670 Citrullus lanatus HOM05D002550 ORTHO05D003420 2.8e-11 71.6 49 71.4
Dinv38342 Davidia involucrata HOM05D002550 ORTHO05D003420 2.8e-11 71.6 53 66.0
PGR004G1960 Punica granatum HOM05D002550 ORTHO05D003420 3.6e-11 71.2 55 69.1
Cpa.g.c30474 Carica papaya HOM05D002550 ORTHO05D003420 4.7e-11 70.9 58 60.3
CiPaw.02G088400 Carya illinoinensis HOM05D002550 ORTHO05D003420 6.1e-11 70.5 55 65.5
CANSAT78G0200 Cannabis sativa HOM05D002550 ORTHO05D003420 8.0e-11 70.1 60 65.0
MD13G1176200 Malus domestica HOM05D002550 ORTHO05D003420 8.0e-11 70.1 72 52.8
Sabra08G0163000 Salix brachista HOM05D002550 ORTHO05D003420 8.0e-11 70.1 59 64.4
TAR362G1274 Trochodendron aralioides HOM05D002550 ORTHO05D003420 8.0e-11 70.1 52 61.5
Cc03_g02620 Coffea canephora HOM05D002550 ORTHO05D003420 1.0e-10 69.7 54 66.7
Glyma.13G212900 Glycine max HOM05D002550 ORTHO05D003420 1.0e-10 69.7 60 63.3
QL06p006546 Quercus lobata HOM05D002550 ORTHO05D003420 1.0e-10 69.7 61 57.4
Hund20621 Selenicereus undatus HOM05D002550 ORTHO05D013634 1.0e-10 69.7 67 56.7
Atru.chr4.2716 Acer truncatum HOM05D002550 ORTHO05D003420 1.4e-10 69.3 60 63.3
CARHR194140 Cardamine hirsuta HOM05D002550 ORTHO05D003420 1.4e-10 69.3 57 61.4
Haze_01028 Corylus avellana HOM05D002550 ORTHO05D003420 1.4e-10 69.3 62 61.3
Dinv44449 Davidia involucrata HOM05D002550 ORTHO05D003420 1.4e-10 69.3 54 61.1
Gohir.A10G104600 Gossypium hirsutum HOM05D002550 ORTHO05D003420 1.4e-10 69.3 56 67.9
Gorai.011G183200 Gossypium raimondii HOM05D002550 ORTHO05D013634 1.4e-10 69.3 56 67.9
QL06p006569 Quercus lobata HOM05D002550 ORTHO05D003420 1.4e-10 69.3 60 61.7
FAN12G1002 Fragaria x ananassa HOM05D002550 ORTHO05D013634 1.8e-10 68.9 55 65.5
Lalb_Chr12g0196401 Lupinus albus HOM05D002550 ORTHO05D003420 1.8e-10 68.9 69 55.1
MBI19_g13513_MAGBIO Magnolia biondii HOM05D002550 ORTHO05D003420 1.8e-10 68.9 53 62.3
Oeu022237.1 Olea europaea HOM05D002550 ORTHO05D003420 1.8e-10 68.9 54 59.3
Phvul.006G159400 Phaseolus vulgaris HOM05D002550 ORTHO05D003420 2.3e-10 68.6 57 68.4
FAN07G1865 Fragaria x ananassa HOM05D002550 ORTHO05D003420 3.1e-10 68.2 54 66.7
Potri.008G197400 Populus trichocarpa HOM05D002550 ORTHO05D003420 3.1e-10 68.2 58 65.5
BcaB05g23349 Brassica carinata HOM05D002550 ORTHO05D003420 4.0e-10 67.8 65 56.9
Cfa015521 Carpinus fangiana HOM05D002550 ORTHO05D003420 4.0e-10 67.8 57 66.7
Gohir.D10G164100 Gossypium hirsutum HOM05D002550 ORTHO05D003420 4.0e-10 67.8 56 66.1
CARHR194130 Cardamine hirsuta HOM05D002550 ORTHO05D003420 5.2e-10 67.4 57 61.4
QL06p006514 Quercus lobata HOM05D002550 ORTHO05D003420 5.2e-10 67.4 77 53.2
Sp6g25510 Schrenkiella parvula HOM05D002550 ORTHO05D003420 5.2e-10 67.4 50 68.0
Thhalv10012637m.g Eutrema salsugineum HOM05D002550 ORTHO05D003420 6.8e-10 67.0 57 63.2
Lj3A807G46 Lonicera japonica HOM05D002550 ORTHO05D003420 6.8e-10 67.0 53 62.3
Lj4g0021291 Lotus japonicus HOM05D002550 ORTHO05D003420 8.9e-10 66.6 60 60.0
BcaB08g36637 Brassica carinata HOM05D002550 ORTHO05D003420 1.2e-09 66.2 52 65.4
THA.LOC104827126 Tarenaya hassleriana HOM05D002550 ORTHO05D003420 1.2e-09 66.2 65 53.8
Actinidia23446 Actinidia chinensis HOM05D002550 ORTHO05D003420 1.5e-09 65.9 62 58.1
BcaC04g18640 Brassica carinata HOM05D002550 ORTHO05D003420 1.5e-09 65.9 52 65.4
A10p20770 Brassica napus HOM05D002550 ORTHO05D003420 1.5e-09 65.9 52 65.4
C09p57640 Brassica napus HOM05D002550 ORTHO05D003420 1.5e-09 65.9 52 65.4
BolC9t58631H Brassica oleracea HOM05D002550 ORTHO05D003420 1.5e-09 65.9 52 65.4
BraA10t44140Z Brassica rapa HOM05D002550 ORTHO05D003420 1.5e-09 65.9 52 65.4
Lj4g0021508 Lotus japonicus HOM05D002550 ORTHO05D003420 1.5e-09 65.9 59 59.3
Medtr4g051093 Medicago truncatula HOM05D002550 ORTHO05D048870 1.5e-09 65.9 43 72.1
Medtr4g118590 Medicago truncatula HOM05D002550 ORTHO05D003420 1.5e-09 65.9 43 69.8
PSO170G1762 Papaver somniferum HOM05D002550 ORTHO05D003420 1.5e-09 65.9 55 69.1
Sp6g25500 Schrenkiella parvula HOM05D002550 ORTHO05D003420 1.5e-09 65.9 56 60.7
Ciclev10004275m.g Citrus clementina HOM05D002550 ORTHO05D003420 2.0e-09 65.5 57 64.9
Lsat_1_v5_gn_5_59420 Lactuca sativa HOM05D002550 ORTHO05D003420 2.0e-09 65.5 49 63.3
AL6G30220 Arabidopsis lyrata HOM05D002550 ORTHO05D003420 3.4e-09 64.7 57 59.6
VMungo1215G1968 Vigna mungo HOM05D002550 ORTHO05D003420 3.4e-09 64.7 65 58.5
MSTRG.10036 Avicennia marina HOM05D002550 ORTHO05D003420 4.4e-09 64.3 49 65.3
Nn3g21210 Nelumbo nucifera HOM05D002550 ORTHO05D003420 4.4e-09 64.3 53 58.5
Phvul.003G099100 Phaseolus vulgaris HOM05D002550 ORTHO05D003420 4.4e-09 64.3 59 57.6
TPR.G14959 Trifolium pratense HOM05D002550 ORTHO05D013634 4.4e-09 64.3 45 68.9
BcaC03g13621 Brassica carinata HOM05D002550 ORTHO05D003420 5.8e-09 63.9 56 58.9
C02p10170 Brassica napus HOM05D002550 ORTHO05D003420 5.8e-09 63.9 56 58.9
BolC2t06919H Brassica oleracea HOM05D002550 ORTHO05D003420 5.8e-09 63.9 56 58.9
vmacro08228 Vaccinium macrocarpon HOM05D002550 ORTHO05D003420 5.8e-09 63.9 33 90.9
CSS0001537 Camellia sinensis var. sinensis HOM05D002550 ORTHO05D003420 7.5e-09 63.5 62 54.8
Manes.04G041950 Manihot esculenta HOM05D002550 ORTHO05D013634 7.5e-09 63.5 44 68.2
AT5G18870 Arabidopsis thaliana HOM05D002550 ORTHO05D013634 9.8e-09 63.2 52 61.5
Sabra08G0162800 Salix brachista HOM05D002550 ORTHO05D003420 9.8e-09 63.2 57 59.6
Aqoxy2G03174 Aquilegia oxysepala HOM05D002550 ORTHO05D003420 1.3e-08 62.8 58 56.9
Carub.0006s1718 Capsella rubella HOM05D002550 ORTHO05D003420 1.3e-08 62.8 49 63.3
PSO302G0050 Papaver somniferum HOM05D002550 ORTHO05D003420 1.3e-08 62.8 59 54.2
Eucgr.H04434 Eucalyptus grandis HOM05D002550 ORTHO05D003420 1.7e-08 62.4 57 49.1
ECA240G0769 Erigeron canadensis HOM05D000004 ORTHO05D003420 3.7e-08 61.2 49 63.3
Psat4g030200 Pisum sativum HOM05D002550 ORTHO05D003420 3.7e-08 61.2 57 54.4
TPR.G14947 Trifolium pratense HOM05D002550 ORTHO05D003420 4.9e-08 60.8 53 58.5
vmacro08229 Vaccinium macrocarpon HOM05D002550 ORTHO05D003420 4.9e-08 60.8 55 61.8
AT5G18860 Arabidopsis thaliana HOM05D002550 ORTHO05D003420 6.4e-08 60.5 52 59.6
arahy.Tifrunner.gnm1.ann1.HBBK2U Arachis hypogaea HOM05D002550 ORTHO05D003420 6.4e-08 60.5 34 85.3
Glyma.07G252950 Glycine max HOM05D002550 ORTHO05D003420 6.4e-08 60.5 54 59.3
Rhsim04G0214000 Rhododendron simsii HOM05D002550 ORTHO05D003420 8.3e-08 60.1 33 84.8
arahy.Tifrunner.gnm1.ann1.VS82SS Arachis hypogaea HOM05D002550 ORTHO05D003420 1.1e-07 59.7 57 56.1
AUR62033995 Chenopodium quinoa HOM05D002550 ORTHO05D003420 1.1e-07 59.7 53 64.2
Lalb_Chr07g0177511 Lupinus albus HOM05D002550 ORTHO05D003420 1.1e-07 59.7 54 59.3
Potri.008G197500 Populus trichocarpa HOM05D002550 ORTHO05D003420 1.1e-07 59.7 56 62.5
ECA240G2265 Erigeron canadensis HOM05D002550 ORTHO05D003420 1.4e-07 59.3 32 84.4
Lsat_1_v5_gn_5_54940 Lactuca sativa HOM05D002550 ORTHO05D003420 1.4e-07 59.3 59 54.2
GSVIVG01022017001 Vitis vinifera HOM05D002550 ORTHO05D003420 1.4e-07 59.3 44 63.6
Glyma.17G021400 Glycine max HOM05D002550 ORTHO05D003420 1.9e-07 58.9 62 51.6
HanXRQChr13g0411511 Helianthus annuus HOM05D002550 ORTHO05D003420 2.4e-07 58.5 39 71.8
HPP92_006944 Vanilla planifolia HOM05D002550 ORTHO05D003420 2.4e-07 58.5 56 55.4
Nn4g26105 Nelumbo nucifera HOM05D002550 ORTHO05D003420 4.1e-07 57.8 57 57.9
Atru.chr2.531 Acer truncatum HOM05D002550 ORTHO05D003420 5.4e-07 57.4 59 52.5
EL10Ac3g06501 Beta vulgaris HOM05D002550 ORTHO05D003420 5.4e-07 57.4 33 81.8
Carub.0006s1719 Capsella rubella HOM05D002550 ORTHO05D003420 5.4e-07 57.4 41 68.3
Nitab4.5_0000535g0130 Nicotiana tabacum HOM05D002550 ORTHO05D003420 7.0e-07 57.0 43 67.4
Solyc01g080560.1 Solanum lycopersicum HOM05D002550 ORTHO05D003420 7.0e-07 57.0 68 50.0
Atru.chr2.527 Acer truncatum HOM05D002550 ORTHO05D021057 9.2e-07 56.6 63 49.2
EL10Ac8g18818 Beta vulgaris HOM05D002550 ORTHO05D003420 9.2e-07 56.6 56 57.1
HanXRQChr13g0411181 Helianthus annuus HOM05D002550 ORTHO05D003420 9.2e-07 56.6 36 66.7
vmacro08230 Vaccinium macrocarpon HOM05D002550 ORTHO05D003420 9.2e-07 56.6 37 75.7
HanXRQChr03g0081741 Helianthus annuus HOM05D002550 ORTHO05D003420 1.2e-06 56.2 40 67.5
PSO782G5245 Papaver somniferum HOM05D002550 ORTHO05D003420 1.2e-06 56.2 63 47.6
Sc25g0004630 Simmondsia chinensis HOM05D002550 ORTHO05D003420 1.2e-06 56.2 36 75.0
MD12G1227000 Malus domestica HOM05D002550 ORTHO05D003420 1.6e-06 55.8 68 44.1
Peaxi162Scf00095g00133 Petunia axillaris HOM05D002550 ORTHO05D003420 1.6e-06 55.8 68 52.9
HanXRQChr03g0081771 Helianthus annuus HOM05D002550 ORTHO05D003420 2.0e-06 55.5 52 55.8
Nitab4.5_0000059g0320 Nicotiana tabacum HOM05D002550 ORTHO05D003420 2.0e-06 55.5 57 50.9
Rhsim05G0146100 Rhododendron simsii HOM05D002550 ORTHO05D003420 2.0e-06 55.5 37 64.9
CDE05G0612 Ceratophyllum demersum HOM05D002550 ORTHO05D003420 2.7e-06 55.1 55 45.5
TPR.G14952 Trifolium pratense HOM05D002550 ORTHO05D003420 2.7e-06 55.1 35 71.4
Ciclev10003811m.g Citrus clementina HOM05D002550 ORTHO05D003420 4.6e-06 54.3 41 61.0
Solyc01g080570.4 Solanum lycopersicum HOM05D002550 ORTHO05D003420 4.6e-06 54.3 38 68.4
Sopen01g032390 Solanum pennellii HOM05D002550 ORTHO05D003420 4.6e-06 54.3 38 68.4
HanXRQChr03g0081721 Helianthus annuus HOM05D002550 ORTHO05D003420 6.0e-06 53.9 62 46.8


User provided reference genes

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