Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18029 Trifolium pratense HOM05D001921 ORTHO05D001784 1.6e-96 356.3 206 100.0
Ca_00585_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 1.8e-52 209.9 214 59.3
Medtr2g020830 Medicago truncatula HOM05D001921 ORTHO05D001784 1.6e-51 206.8 216 61.6
Psat1g185920 Pisum sativum HOM05D001921 ORTHO05D001784 3.5e-51 205.7 229 55.5
Lj6g0003156 Lotus japonicus HOM05D001921 ORTHO05D001784 1.0e-39 167.5 219 51.1
Lj6g0019677 Lotus japonicus HOM05D001921 ORTHO05D001784 1.0e-39 167.5 219 51.1
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 4.8e-37 158.7 215 49.8
Lalb_Chr15g0087151 Lupinus albus HOM05D001921 ORTHO05D001784 1.2e-35 154.1 208 55.8
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 3.5e-35 152.5 215 48.8
Haze_01021 Corylus avellana HOM05D001921 ORTHO05D001784 3.8e-34 149.1 231 46.8
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 6.5e-34 148.3 225 48.0
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 6.5e-34 148.3 220 47.3
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 8.6e-34 147.9 227 48.0
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 8.6e-34 147.9 225 48.0
Cfa015526 Carpinus fangiana HOM05D001921 ORTHO05D001784 3.3e-33 146.0 231 46.3
Glyma.15G100300 Glycine max HOM05D001921 ORTHO05D001784 2.8e-32 142.9 214 46.3
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 8.0e-32 141.4 222 51.8
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 1.4e-31 140.6 222 51.8
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 1.8e-31 140.2 214 47.7
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 3.0e-31 139.4 223 46.2
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 5.7e-30 135.2 223 44.8
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 1.3e-29 134.0 235 44.7
Glyma.17G021000 Glycine max HOM05D001921 ORTHO05D001784 2.2e-29 133.3 208 43.8
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 3.7e-29 132.5 218 47.2
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 4.9e-29 132.1 225 42.7
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 8.3e-29 131.3 220 44.5
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.1e-28 131.0 225 43.6
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 7.0e-28 128.3 223 43.5
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 7.0e-28 128.3 223 43.5
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 1.2e-27 127.5 230 40.4
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.6e-27 127.1 218 48.2
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.0e-27 126.7 223 43.0
CiPaw.01G156200 Carya illinoinensis HOM05D001921 ORTHO05D001784 3.5e-27 125.9 224 41.1
Lalb_Chr18g0055871 Lupinus albus HOM05D001921 ORTHO05D001784 4.5e-27 125.6 211 47.9
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 5.9e-27 125.2 218 47.7
CANSAT78G1722 Cannabis sativa HOM05D001921 ORTHO05D001784 1.3e-26 124.0 226 43.4
Glyma.07G253400 Glycine max HOM05D001921 ORTHO05D001784 1.7e-26 123.6 204 44.1
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 2.9e-26 122.9 222 42.3
Manes.03G188600 Manihot esculenta HOM05D001921 ORTHO05D001784 2.9e-26 122.9 232 39.7
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 2.9e-26 122.9 236 40.7
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 3.8e-26 122.5 233 41.6
TAR636G3386 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.5e-25 120.6 213 39.0
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 2.1e-24 116.7 214 45.3
Phvul.003G098700 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 2.8e-24 116.3 205 42.0
PGR031G1199 Punica granatum HOM05D001921 ORTHO05D001784 2.8e-24 116.3 213 40.4
Rhsim02G0016000 Rhododendron simsii HOM05D001921 ORTHO05D001784 2.8e-24 116.3 232 39.2
Sed0022941 Sechium edule HOM05D001921 ORTHO05D001784 6.1e-24 115.2 207 42.0
FvH4_4g16740 Fragaria vesca HOM05D001921 ORTHO05D001784 3.0e-23 112.8 210 43.8
FAN12G2234 Fragaria x ananassa HOM05D001921 ORTHO05D001784 3.0e-23 112.8 210 43.8
FAN12G3386 Fragaria x ananassa HOM05D001921 ORTHO05D001784 3.0e-23 112.8 210 43.8
Sabra10G0013000 Salix brachista HOM05D001921 ORTHO05D001784 3.0e-23 112.8 220 41.4
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 4.0e-23 112.5 228 45.2
FAN17G2860 Fragaria x ananassa HOM05D001921 ORTHO05D001784 5.2e-23 112.1 211 43.6
VMungo1215G1281 Vigna mungo HOM05D001921 ORTHO05D001784 5.2e-23 112.1 204 46.1
FAN22G2319 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.2e-22 110.9 210 43.8
RcHm_v2.0_Chr4g0420321 Rosa chinensis HOM05D001921 ORTHO05D001784 1.2e-22 110.9 208 42.3
FAN07G0769 Fragaria x ananassa HOM05D001921 ORTHO05D001784 4.4e-22 109.0 211 41.7
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 7.5e-22 108.2 222 38.3
Ciclev10005894m.g Citrus clementina HOM05D001921 ORTHO05D001784 1.3e-21 107.5 225 38.7
PGSC0003DMG400030765 Solanum tuberosum HOM05D001921 ORTHO05D001784 2.9e-21 106.3 208 40.9
PGR004G0777 Punica granatum HOM05D001921 ORTHO05D001784 8.3e-21 104.8 209 45.5
Oeu037657.1 Olea europaea HOM05D001921 ORTHO05D001784 1.1e-20 104.4 228 35.5
Lj4g0019196 Lotus japonicus HOM05D001921 ORTHO05D001784 1.4e-20 104.0 208 48.1
TPR.G28126 Trifolium pratense HOM05D001921 ORTHO05D001784 1.4e-20 104.0 206 39.3
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 2.4e-20 103.2 215 38.1
Atru.chr4.2710 Acer truncatum HOM05D001921 ORTHO05D001784 4.1e-20 102.4 211 40.3
Nitab4.5_0002295g0070 Nicotiana tabacum HOM05D001921 ORTHO05D001784 5.4e-20 102.1 210 39.5
THA.LOC104820224 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 5.4e-20 102.1 207 39.6
Sopen06g019540 Solanum pennellii HOM05D001921 ORTHO05D001784 7.0e-20 101.7 207 39.1
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 1.6e-19 100.5 217 39.2
Nitab4.5_0009936g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 2.0e-19 100.1 208 40.4
Solyc06g054470.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 3.5e-19 99.4 207 38.2
Oeu022233.1 Olea europaea HOM05D001921 ORTHO05D001784 2.3e-18 96.7 234 35.9
Ca_21561_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 5.0e-18 95.5 205 40.0
Oeu032694.1 Olea europaea HOM05D001921 ORTHO05D001784 5.0e-18 95.5 235 36.2
DCAR_030578 Daucus carota HOM05D001921 ORTHO05D001784 8.6e-18 94.7 210 36.7
Actinidia00069 Actinidia chinensis HOM05D001921 ORTHO05D001784 1.9e-17 93.6 225 36.0
Psat4g028640 Pisum sativum HOM05D001921 ORTHO05D001784 3.3e-17 92.8 204 38.7
Lalb_Chr12g0196391 Lupinus albus HOM05D001921 ORTHO05D001784 4.3e-17 92.4 207 36.7
SGA_v2.0_scaffold142G35647 Striga asiatica HOM05D001921 ORTHO05D001784 9.5e-17 91.3 241 34.9
PGSC0003DMG400032113 Solanum tuberosum HOM05D001921 ORTHO05D001784 2.8e-16 89.7 238 34.9
SGA_v2.0_scaffold57G20294 Striga asiatica HOM05D001921 ORTHO05D001784 2.8e-16 89.7 234 36.3
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 1.8e-15 87.0 227 33.0
CAN.G256.2 Capsicum annuum HOM05D001921 ORTHO05D001784 1.8e-15 87.0 210 35.7
CAN.G889.1 Capsicum annuum HOM05D001921 ORTHO05D001784 3.1e-15 86.3 238 34.9
Aqoxy2G03179 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 5.2e-15 85.5 244 33.6
Sopen01g032320 Solanum pennellii HOM05D001921 ORTHO05D001784 8.9e-15 84.7 239 34.7
Solyc01g080500.2 Solanum lycopersicum HOM05D001921 ORTHO05D001784 2.0e-14 83.6 240 34.2
Migut.G00240 Erythranthe guttata HOM05D001921 ORTHO05D001784 2.6e-14 83.2 230 32.2
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 3.4e-14 82.8 218 37.2
DCAR_002429 Daucus carota HOM05D001921 ORTHO05D001784 4.4e-14 82.4 232 34.1
Aa31LG8G8240 Aethionema arabicum HOM05D001921 ORTHO05D001784 5.8e-14 82.0 209 33.0
SGA_v2.0_scaffold89G27578 Striga asiatica HOM05D001921 ORTHO05D001784 1.3e-13 80.9 218 35.8
Cfa017851 Carpinus fangiana HOM05D001921 ORTHO05D001784 6.4e-13 78.6 64 60.9
Nitab4.5_0003070g0060 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.9e-12 77.0 221 36.7
Nitab4.5_0000059g0260 Nicotiana tabacum HOM05D001921 ORTHO05D001784 2.4e-12 76.6 225 37.3
Cfa010136 Carpinus fangiana HOM05D001921 ORTHO05D001784 3.2e-12 76.3 64 60.9
Peaxi162Scf00769g00001 Petunia axillaris HOM05D001921 ORTHO05D001784 3.2e-12 76.3 209 36.4
HPP92_025281 Vanilla planifolia HOM05D001921 ORTHO05D001784 7.0e-12 75.1 210 33.8
Actinidia32376 Actinidia chinensis HOM05D001921 ORTHO05D001784 9.2e-12 74.7 162 37.0
AT3G21570 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 9.2e-12 74.7 209 29.7
BcaC09g49094 Brassica carinata HOM05D001921 ORTHO05D001784 1.6e-11 73.9 209 30.6
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 1.6e-11 73.9 226 31.4
AL3G35680 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 3.5e-11 72.8 209 30.1
A01p33350 Brassica napus HOM05D001921 ORTHO05D001784 3.5e-11 72.8 209 29.2
BraA01t03453Z Brassica rapa HOM05D001921 ORTHO05D001784 3.5e-11 72.8 209 29.2
BcaB04g20578 Brassica carinata HOM05D001921 ORTHO05D001784 4.6e-11 72.4 209 28.7
Medtr4g118490 Medicago truncatula HOM05D001921 ORTHO05D001784 7.8e-11 71.6 112 46.4
unitig_32.g11745 Utricularia gibba HOM05D001921 ORTHO05D001784 7.8e-11 71.6 211 32.7
C01p42590 Brassica napus HOM05D001921 ORTHO05D001784 1.0e-10 71.2 209 30.1
BolC1t04216H Brassica oleracea HOM05D001921 ORTHO05D001784 1.0e-10 71.2 209 30.1
unitig_748.g8567 Utricularia gibba HOM05D001921 ORTHO05D001784 1.0e-10 71.2 211 32.2
Aqoxy5G00575 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 1.3e-10 70.9 211 30.3
Eucgr.H03650 Eucalyptus grandis HOM05D001921 ORTHO05D001784 1.3e-10 70.9 206 32.5
Peaxi162Scf00095g00034 Petunia axillaris HOM05D001921 ORTHO05D001784 2.3e-10 70.1 204 45.1
CDE11G0807 Ceratophyllum demersum HOM05D001921 ORTHO05D001784 5.0e-10 68.9 219 30.6
DCAR_027127 Daucus carota HOM05D001921 ORTHO05D001784 6.6e-10 68.6 94 43.6
MBI19_g25275_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 8.6e-10 68.2 88 47.7
Sp3g19600 Schrenkiella parvula HOM05D001921 ORTHO05D001784 1.5e-09 67.4 211 28.0
CARHR097520 Cardamine hirsuta HOM05D001921 ORTHO05D001784 1.9e-09 67.0 215 29.3
MD03G1009700 Malus domestica HOM05D001921 ORTHO05D001784 1.9e-09 67.0 87 48.3
Sc15g0003760 Simmondsia chinensis HOM05D001921 ORTHO05D001784 1.9e-09 67.0 88 50.0
Eucgr.B01216 Eucalyptus grandis HOM05D001921 ORTHO05D001784 2.5e-09 66.6 157 36.3
Dinv42904 Davidia involucrata HOM05D001921 ORTHO05D001784 1.6e-08 63.9 137 38.7
Dinv43197 Davidia involucrata HOM05D001921 ORTHO05D001784 1.6e-08 63.9 137 38.7
MSTRG.3970 Avicennia marina HOM05D001921 ORTHO05D001784 6.2e-08 62.0 117 39.3
PSO782G1936 Papaver somniferum HOM05D001921 ORTHO05D001784 8.1e-08 61.6 226 36.7
SalBow2G1161 Salvia bowleyana HOM05D001921 ORTHO05D001784 2.3e-07 60.1 120 40.8
Carub.0003s2161 Capsella rubella HOM05D001921 ORTHO05D001784 4.0e-07 59.3 152 34.9
SalBow5G1185 Salvia bowleyana HOM05D001921 ORTHO05D001784 4.0e-07 59.3 215 27.4
SalBow5G3126 Salvia bowleyana HOM05D001921 ORTHO05D001784 4.0e-07 59.3 215 27.4
TAR383G0606 Trochodendron aralioides HOM05D001921 ORTHO05D001784 5.2e-07 58.9 214 30.4
Os01g0384800 Oryza sativa ssp. japonica HOM05D001921 ORTHO05D001784 6.8e-07 58.5 47 59.6
Aqoxy7G03512 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 8.9e-07 58.2 149 32.9
Hma1.2p1_0028F.1_g017215 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 8.9e-07 58.2 98 42.9
VMungo1215G2840 Vigna mungo HOM05D001921 ORTHO05D001784 8.9e-07 58.2 144 34.0
Phvul.003G175500 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 1.2e-06 57.8 160 31.9
Cc03_g02690 Coffea canephora HOM05D001921 ORTHO05D001784 1.5e-06 57.4 133 36.8
Dinv03521 Davidia involucrata HOM05D001921 ORTHO05D001784 1.5e-06 57.4 154 31.8
Manes.16G126400 Manihot esculenta HOM05D001921 ORTHO05D001784 1.5e-06 57.4 159 34.0
Lj4g0015946 Lotus japonicus HOM05D001921 ORTHO05D001784 2.0e-06 57.0 113 38.9
Duzib168G1630 Durio zibethinus HOM05D001921 ORTHO05D001784 2.6e-06 56.6 223 27.8
Hma1.2p1_2976F.1_g331170 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 2.6e-06 56.6 98 42.9
HPP92_001333 Vanilla planifolia HOM05D001921 ORTHO05D001784 2.6e-06 56.6 113 40.7
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 3.4e-06 56.2 158 33.5
TWI32G1277 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 3.4e-06 56.2 143 32.2
CSS0005509 Camellia sinensis var. sinensis HOM05D001921 ORTHO05D001784 5.8e-06 55.5 146 37.7
Ca_21607_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 5.8e-06 55.5 117 35.9
Nitab4.5_0009186g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 5.8e-06 55.5 106 42.5
Migut.N00134 Erythranthe guttata HOM05D001921 ORTHO05D001784 7.5e-06 55.1 102 39.2
TWI63G0810 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 7.5e-06 55.1 156 32.1
Cfa020875 Carpinus fangiana HOM05D001921 ORTHO05D001784 9.9e-06 54.7 152 33.6


User provided reference genes

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