Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17892 Trifolium pratense HOM05D007542 ORTHO05D009519 9.3e-99 363.6 193 100.0
TPR.G1179 Trifolium pratense HOM05D007542 ORTHO05D009519 7.9e-74 280.8 193 80.3
Medtr5g093440 Medicago truncatula HOM05D007542 ORTHO05D009519 4.3e-72 275.0 187 78.1
Medtr5g093430 Medicago truncatula HOM05D007542 ORTHO05D009519 5.9e-69 264.6 189 77.8
Psat2g012400 Pisum sativum HOM05D007542 ORTHO05D009519 5.1e-65 251.5 188 77.1
Psat2g012360 Pisum sativum HOM05D007542 ORTHO05D009519 2.6e-64 249.2 189 74.1
Ca_06340_v3 Cicer arietinum L. HOM05D007542 ORTHO05D009519 1.2e-48 197.2 188 64.4
LjContig00272g0021523 Lotus japonicus HOM05D007542 ORTHO05D009519 2.8e-47 192.6 188 64.4
Glyma.14G021700 Glycine max HOM05D007542 ORTHO05D009519 2.6e-40 169.5 195 56.9
Lj6g0015208 Lotus japonicus HOM05D007542 ORTHO05D009519 2.8e-39 166.0 187 57.2
Lalb_Chr04g0248281 Lupinus albus HOM05D007542 ORTHO05D009519 9.1e-38 161.0 191 56.0
Phvul.006G046800 Phaseolus vulgaris HOM05D007542 ORTHO05D009519 1.2e-37 160.6 187 57.8
Glyma.18G092800 Glycine max HOM05D007542 ORTHO05D009519 2.0e-37 159.8 187 56.1
Phvul.008G269700 Phaseolus vulgaris HOM05D007542 ORTHO05D009519 1.9e-35 153.3 194 52.1
Thecc.07G031100 Theobroma cacao HOM05D007542 ORTHO05D009519 9.5e-35 151.0 188 53.7
Duzib170G0581 Durio zibethinus HOM05D007542 ORTHO05D009519 1.2e-34 150.6 189 53.4
VMungo0647G1207 Vigna mungo HOM05D007542 ORTHO05D009519 1.2e-34 150.6 194 52.6
Manes.03G133100 Manihot esculenta HOM05D007542 ORTHO05D009519 2.8e-34 149.4 193 51.3
arahy.Tifrunner.gnm1.ann1.T42YYR Arachis hypogaea HOM05D007542 ORTHO05D009519 3.6e-34 149.1 185 53.0
Glyma.08G319700 Glycine max HOM05D007542 ORTHO05D009519 3.6e-34 149.1 187 53.5
QL08p006891 Quercus lobata HOM05D007542 ORTHO05D009519 4.7e-34 148.7 195 51.3
Cpa.g.sc12.265 Carica papaya HOM05D007542 ORTHO05D009519 8.0e-34 147.9 192 53.6
arahy.Tifrunner.gnm1.ann1.C8UBJW Arachis hypogaea HOM05D007542 ORTHO05D009519 1.8e-33 146.7 185 51.9
Ca_25812_v3 Cicer arietinum L. HOM05D007542 ORTHO05D009519 1.5e-32 143.7 186 48.4
Gohir.D01G069700 Gossypium hirsutum HOM05D007542 ORTHO05D009519 2.6e-32 142.9 192 51.0
TWI38G0725 Tripterygium wilfordii HOM05D007542 ORTHO05D009519 4.4e-32 142.1 191 52.9
Gorai.002G092100 Gossypium raimondii HOM05D007542 ORTHO05D009519 7.5e-32 141.4 192 50.5
Nn1g03444 Nelumbo nucifera HOM05D007542 ORTHO05D009519 9.8e-32 141.0 200 47.0
Prupe.4G220300 Prunus persica HOM05D007542 ORTHO05D009519 9.8e-32 141.0 201 48.3
TAR643G0006 Trochodendron aralioides HOM05D007542 ORTHO05D009519 1.3e-31 140.6 191 48.2
Lj6g0001233 Lotus japonicus HOM05D007542 ORTHO05D009519 1.7e-31 140.2 227 45.4
GSVIVG01037700001 Vitis vinifera HOM05D007542 ORTHO05D009519 2.8e-31 139.4 194 49.0
Potri.011G087000 Populus trichocarpa HOM05D007542 ORTHO05D009519 4.9e-31 138.7 197 47.7
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 6.3e-31 138.3 186 49.5
Prupe.4G220200 Prunus persica HOM05D007542 ORTHO05D009519 8.3e-31 137.9 199 46.7
FAN16G3720 Fragaria x ananassa HOM05D007542 ORTHO05D009519 5.4e-30 135.2 208 41.8
FAN21G0453 Fragaria x ananassa HOM05D007542 ORTHO05D009519 1.2e-29 134.0 208 41.8
Cfa020302 Carpinus fangiana HOM05D007542 ORTHO05D009519 1.6e-29 133.7 196 46.4
arahy.Tifrunner.gnm1.ann1.ENS6UV Arachis hypogaea HOM05D007542 ORTHO05D009519 4.6e-29 132.1 193 48.7
CSS0027066 Camellia sinensis var. sinensis HOM05D007542 ORTHO05D009519 7.8e-29 131.3 194 45.9
Ciclev10009585m.g Citrus clementina HOM05D007542 ORTHO05D009519 1.0e-28 131.0 189 50.3
TAR626G0917 Trochodendron aralioides HOM05D007542 ORTHO05D009519 1.0e-28 131.0 184 48.9
COL.COLO4_09703 Corchorus olitorius HOM05D007542 ORTHO05D009519 1.3e-28 130.6 196 49.0
FvH4_3g23270 Fragaria vesca HOM05D007542 ORTHO05D009519 1.3e-28 130.6 208 40.9
Hma1.2p1_1332F.1_g276050 Hydrangea macrophylla HOM05D007542 ORTHO05D009519 2.3e-28 129.8 194 45.4
Sabra11G0071000 Salix brachista HOM05D007542 ORTHO05D009519 2.3e-28 129.8 196 46.9
RcHm_v2.0_Chr5g0040991 Rosa chinensis HOM05D007542 ORTHO05D009519 2.9e-28 129.4 203 44.3
FAN25G0364 Fragaria x ananassa HOM05D007542 ORTHO05D009519 1.9e-27 126.7 198 41.4
FAN25G1685 Fragaria x ananassa HOM05D007542 ORTHO05D009519 1.9e-27 126.7 198 41.4
Eucgr.F00716 Eucalyptus grandis HOM05D007542 ORTHO05D009519 3.3e-27 125.9 203 42.9
FAN11G1962 Fragaria x ananassa HOM05D007542 ORTHO05D009519 1.4e-25 120.6 198 40.9
Atru.chr2.3499 Acer truncatum HOM05D007542 ORTHO05D009519 1.8e-25 120.2 211 44.1
CiPaw.11G192900 Carya illinoinensis HOM05D007542 ORTHO05D009519 1.8e-25 120.2 197 45.2
MD11G1212200 Malus domestica HOM05D007542 ORTHO05D009519 4.0e-25 119.0 198 47.0
Cc05_g14120 Coffea canephora HOM05D007542 ORTHO05D009519 8.9e-25 117.9 203 41.4
DCAR_016720 Daucus carota HOM05D007542 ORTHO05D009519 8.9e-25 117.9 204 47.5
MD03G1195800 Malus domestica HOM05D007542 ORTHO05D009519 2.0e-24 116.7 206 42.2
Sopen07g033030 Solanum pennellii HOM05D007542 ORTHO05D009519 5.8e-24 115.2 191 42.9
MELO3C014190.2 Cucumis melo HOM05D007542 ORTHO05D009519 9.8e-24 114.4 191 41.9
Dinv40786 Davidia involucrata HOM05D007542 ORTHO05D009519 9.8e-24 114.4 189 41.8
Rhsim06G0222000 Rhododendron simsii HOM05D007542 ORTHO05D009519 9.8e-24 114.4 184 44.6
CsaV3_3G004930 Cucumis sativus L. HOM05D007542 ORTHO05D009519 1.7e-23 113.6 195 42.1
TAR624G0015 Trochodendron aralioides HOM05D007542 ORTHO05D009519 4.9e-23 112.1 187 42.8
Nitab4.5_0000328g0130 Nicotiana tabacum HOM05D007542 ORTHO05D009519 1.1e-22 110.9 196 43.9
Medtr3g053160 Medicago truncatula HOM05D007542 ORTHO05D009519 1.4e-22 110.5 190 42.1
CAN.G492.20 Capsicum annuum HOM05D007542 ORTHO05D009519 3.2e-22 109.4 207 42.0
Actinidia05075 Actinidia chinensis HOM05D007542 ORTHO05D009519 4.1e-22 109.0 183 42.6
Nn1g07236 Nelumbo nucifera HOM05D007542 ORTHO05D009519 4.1e-22 109.0 199 42.2
MSTRG.6947 Avicennia marina HOM05D007542 ORTHO05D009519 2.7e-21 106.3 191 40.8
VMungo0540G1120 Vigna mungo HOM05D007542 ORTHO05D009519 3.5e-21 105.9 187 40.6
Aqoxy1G03049 Aquilegia oxysepala HOM05D007542 ORTHO05D009519 1.0e-20 104.4 196 39.8
MBI10_g09179_MAGBIO Magnolia biondii HOM05D007542 ORTHO05D009519 6.6e-20 101.7 187 39.6
Oeu026398.1 Olea europaea HOM05D007542 ORTHO05D009519 3.3e-19 99.4 188 38.3
PGSC0003DMG400022335 Solanum tuberosum HOM05D007542 ORTHO05D009519 4.3e-19 99.0 171 40.9
PGSC0003DMG400014384 Solanum tuberosum HOM05D007542 ORTHO05D009519 9.5e-19 97.8 215 40.0
Nitab4.5_0002826g0080 Nicotiana tabacum HOM05D007542 ORTHO05D009519 4.7e-18 95.5 196 40.8
CAN.G337.69 Capsicum annuum HOM05D007542 ORTHO05D009519 1.8e-17 93.6 188 39.9
Sc03g0008420 Simmondsia chinensis HOM05D007542 ORTHO05D009519 2.3e-17 93.2 186 41.9
Sc16g0005830 Simmondsia chinensis HOM05D007542 ORTHO05D009519 1.2e-16 90.9 190 37.9
Migut.H01805 Erythranthe guttata HOM05D007542 ORTHO05D009519 3.4e-16 89.4 193 36.3
Solyc10g006150.3 Solanum lycopersicum HOM05D007542 ORTHO05D009519 5.8e-16 88.6 189 37.6
Peaxi162Scf00235g00059 Petunia axillaris HOM05D007542 ORTHO05D009519 2.2e-15 86.7 167 41.3
Oeu008012.1 Olea europaea HOM05D007542 ORTHO05D009519 6.4e-15 85.1 184 38.6
Lj1P878T38 Lonicera japonica HOM05D007542 ORTHO05D009519 1.1e-14 84.3 160 40.0
Hma1.2p1_3935F.1_g338010 Hydrangea macrophylla HOM05D007542 ORTHO05D009519 2.4e-14 83.2 152 39.5
MSTRG.12988 Avicennia marina HOM05D007542 ORTHO05D009519 3.5e-13 79.3 185 36.8
EL10Ac4g07752 Beta vulgaris HOM05D007542 ORTHO05D009519 1.7e-12 77.0 198 36.9
Gohir.A01G083201 Gossypium hirsutum HOM05D007542 ORTHO05D009519 1.7e-12 77.0 118 47.5
Manes.15G067900 Manihot esculenta HOM05D007542 ORTHO05D009519 8.6e-12 74.7 148 42.6
PSO541G2394 Papaver somniferum HOM05D007542 ORTHO05D009519 1.5e-11 73.9 225 33.3
Aqoxy1G03452 Aquilegia oxysepala HOM05D007542 ORTHO05D009519 1.2e-10 70.9 146 37.0
CDE08G0529 Ceratophyllum demersum HOM05D007542 ORTHO05D009519 2.8e-10 69.7 142 35.2
Sopen10g002100 Solanum pennellii HOM05D007542 ORTHO05D009519 1.1e-09 67.8 94 48.9
Glyma.02G293000 Glycine max HOM05D007542 ORTHO05D009519 4.0e-09 65.9 181 38.1
Nitab4.5_0004829g0120 Nicotiana tabacum HOM05D007542 ORTHO05D009519 4.1e-06 55.8 173 31.8


User provided reference genes

Program Settings