Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 0.0e+00 1626.3 837 100.0
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 0.0e+00 1423.3 785 93.8
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 0.0e+00 1122.8 783 76.5
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 0.0e+00 1104.7 785 74.5
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 2.9e-311 1071.6 794 72.8
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 1.2e-240 837.0 816 59.6
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 6.2e-200 701.8 782 53.6
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 9.3e-196 688.0 780 52.7
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 7.2e-180 635.2 780 50.0
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 2.3e-170 603.6 753 48.2
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 2.3e-130 470.7 779 43.8
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 3.7e-128 463.4 782 40.4
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 1.5e-124 451.4 447 55.0
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 2.5e-124 450.7 808 40.7
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 4.3e-124 449.9 804 40.9
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 4.3e-124 449.9 475 52.2
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 6.2e-123 446.0 791 39.6
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 1.4e-122 444.9 782 39.9
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 1.8e-122 444.5 793 39.8
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 2.3e-122 444.1 780 39.4
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 1.3e-120 438.3 785 39.0
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 2.9e-120 437.2 790 39.1
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 6.0e-118 429.5 331 64.7
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 5.1e-117 426.4 790 39.0
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 1.1e-116 425.2 781 38.2
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 1.1e-116 425.2 374 57.2
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 2.5e-116 424.1 428 55.6
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 5.6e-116 422.9 380 58.4
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 5.6e-116 422.9 427 53.4
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 8.1e-115 419.1 445 52.1
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 1.1e-114 418.7 368 60.3
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 1.4e-114 418.3 780 38.2
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 1.2e-113 415.2 346 60.7
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 1.5e-113 414.8 790 39.0
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 3.4e-113 413.7 390 57.4
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 4.4e-113 413.3 788 37.7
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 7.6e-113 412.5 442 52.3
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 2.2e-112 411.0 346 59.8
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 4.9e-112 409.8 390 56.9
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 6.4e-112 409.5 354 58.2
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.1e-111 408.7 390 56.7
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 2.4e-111 407.5 344 59.9
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 4.2e-111 406.8 382 57.1
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 4.2e-111 406.8 341 61.0
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 4.2e-111 406.8 349 59.6
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 9.2e-111 405.6 349 59.3
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 1.2e-110 405.2 385 56.4
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 1.2e-110 405.2 790 37.7
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 1.6e-110 404.8 855 35.9
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 2.1e-110 404.4 382 56.5
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 3.5e-110 403.7 368 58.2
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 3.5e-110 403.7 805 38.0
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 6.0e-110 402.9 370 57.8
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 7.8e-110 402.5 451 48.8
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 6.6e-109 399.4 389 55.8
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 8.7e-109 399.1 461 49.7
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 7.3e-108 396.0 342 59.4
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 2.8e-107 394.0 395 52.2
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 4.7e-107 393.3 342 57.9
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 1.1e-106 392.1 414 51.7
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 1.4e-106 391.7 344 57.6
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 2.0e-105 387.9 357 56.9
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 2.0e-105 387.9 373 54.7
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 3.4e-105 387.1 370 53.8
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 4.4e-105 386.7 432 49.8
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 9.9e-105 385.6 737 37.7
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 1.3e-104 385.2 340 57.6
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 1.7e-104 384.8 750 38.4
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 2.2e-104 384.4 380 53.4
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 8.4e-104 382.5 539 43.4
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 8.4e-104 382.5 415 50.8
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 1.1e-103 382.1 539 43.4
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 1.9e-103 381.3 344 56.1
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 1.9e-103 381.3 784 36.7
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 4.2e-103 380.2 360 55.8
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 3.5e-102 377.1 350 55.1
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 6.0e-102 376.3 364 54.4
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 3.0e-101 374.0 346 55.2
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 1.1e-100 372.1 308 60.4
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 1.5e-100 371.7 341 57.2
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 2.1e-99 367.9 337 55.5
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 2.8e-99 367.5 344 55.5
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 4.0e-98 363.6 542 42.6
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 9.9e-97 359.0 790 36.6
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 1.4e-95 355.1 346 53.8
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 1.9e-95 354.8 376 51.1
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 2.4e-95 354.4 349 52.7
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 4.2e-95 353.6 349 52.7
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 4.2e-95 353.6 349 52.7
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 5.4e-95 353.2 501 43.9
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 2.1e-94 351.3 342 53.2
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 6.0e-94 349.7 449 45.7
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 1.0e-93 349.0 612 39.1
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 1.1e-92 345.5 310 57.1
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 3.3e-92 344.0 396 47.7
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 1.6e-91 341.7 379 48.5
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 2.1e-91 341.3 379 48.5
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 2.8e-91 340.9 359 50.7
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 3.7e-91 340.5 350 52.0
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 3.7e-91 340.5 350 51.4
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 4.8e-91 340.1 347 53.0
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 3.1e-90 337.4 350 51.1
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 3.1e-90 337.4 350 51.1
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 5.3e-90 336.7 350 51.1
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 6.9e-90 336.3 407 45.2
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 1.2e-89 335.5 350 51.1
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 1.9e-87 328.2 345 51.3
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 1.8e-77 295.0 206 72.3
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 1.4e-74 285.4 241 62.7
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 7.4e-68 263.1 262 54.2
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 5.3e-66 256.9 205 62.0
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 3.9e-61 240.7 383 37.9
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 8.8e-61 239.6 279 47.0
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 1.7e-59 235.3 228 52.6
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 7.7e-49 199.9 296 41.9
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 1.2e-46 192.6 323 38.4
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 5.2e-45 187.2 169 55.6
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 4.4e-36 157.5 560 30.7
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 1.8e-34 152.1 125 64.8
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 3.5e-33 147.9 113 64.6
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 2.6e-28 131.7 123 52.8
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 1.4e-26 125.9 145 44.8
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 2.7e-25 121.7 125 50.4
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 3.3e-23 114.8 285 28.4
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 6.1e-22 110.5 128 44.5
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 8.9e-21 106.7 106 52.8
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 7.0e-18 97.1 84 57.1
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 1.9e-15 89.0 62 67.7
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 4.3e-15 87.8 183 30.1
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 4.4e-12 77.8 57 70.2
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 4.4e-12 77.8 57 70.2
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 1.4e-10 72.8 82 45.1
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 7.8e-09 67.0 65 55.4


User provided reference genes

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