Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 5.3e-113 411.0 200 100.0
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 1.7e-103 379.4 200 90.0
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 7.9e-101 370.5 200 87.5
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 2.3e-100 369.0 200 87.0
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 1.9e-99 365.9 193 90.2
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 4.0e-97 358.2 200 85.0
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 7.6e-96 354.0 200 86.0
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 7.6e-96 354.0 200 83.0
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 9.3e-94 347.1 200 85.5
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 2.1e-93 345.9 200 83.0
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 1.0e-92 343.6 200 83.5
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 3.9e-92 341.7 200 81.0
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 8.7e-92 340.5 200 82.5
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.5e-91 339.7 200 81.0
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 4.3e-91 338.2 200 80.5
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.3e-90 336.7 200 82.0
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 2.1e-90 335.9 192 84.4
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.1e-89 333.6 200 81.0
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 2.4e-89 332.4 192 83.3
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 9.0e-89 330.5 200 81.0
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 3.9e-84 315.1 192 79.2
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 8.2e-74 280.8 200 71.0
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 5.7e-67 258.1 198 64.1
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 6.3e-66 254.6 197 67.0
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 3.8e-63 245.4 199 61.3
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 2.5e-62 242.7 198 62.1
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 3.3e-59 232.3 199 60.8
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 5.7e-59 231.5 200 59.5
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 3.1e-57 225.7 200 59.0
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 1.2e-56 223.8 201 58.2
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 4.5e-56 221.9 198 61.6
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 1.5e-54 216.9 199 57.8
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 1.4e-49 200.3 167 60.5
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 6.6e-39 164.9 195 46.7
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 4.3e-38 162.2 199 45.2
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 5.6e-38 161.8 200 45.0
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 5.6e-38 161.8 197 45.2
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 5.6e-38 161.8 197 45.2
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 1.2e-37 160.6 199 45.2
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 1.6e-37 160.2 201 44.3
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 1.6e-37 160.2 197 44.7
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 1.6e-37 160.2 197 44.7
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 6.1e-37 158.3 198 45.5
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 8.0e-37 157.9 199 44.7
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 1.0e-36 157.5 197 44.2
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.8e-36 156.8 199 43.7
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 2.3e-36 156.4 199 44.2
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 8.9e-36 154.5 203 43.3
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 1.5e-35 153.7 198 41.9
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 3.4e-35 152.5 199 44.2
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 4.4e-35 152.1 202 44.1
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 5.8e-35 151.8 200 42.5
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 1.3e-34 150.6 200 45.0
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 3.7e-34 149.1 202 42.1
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 3.7e-34 149.1 196 45.4
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 6.4e-34 148.3 198 43.4
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 6.4e-34 148.3 201 42.3
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 1.4e-33 147.1 200 46.0
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 1.4e-33 147.1 208 41.3
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 2.4e-33 146.4 200 42.0
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 3.2e-33 146.0 200 43.0
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 4.6e-32 142.1 205 42.4
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 4.6e-32 142.1 209 42.6
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 4.6e-32 142.1 197 41.6
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 1.0e-31 141.0 207 44.0
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 3.9e-31 139.0 201 40.8
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 5.0e-31 138.7 209 41.6
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 6.6e-31 138.3 208 40.4
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 1.9e-30 136.7 194 39.2
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 2.5e-30 136.3 197 40.1
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 4.3e-30 135.6 240 38.3
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 5.6e-30 135.2 204 39.2
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 7.3e-30 134.8 194 40.7
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 1.2e-29 134.0 204 41.7
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 1.6e-29 133.7 203 42.9
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 2.1e-29 133.3 196 40.8
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.8e-29 132.9 213 39.0
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 3.6e-29 132.5 212 37.7
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 4.7e-29 132.1 214 39.3
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 6.2e-29 131.7 209 38.8
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.3e-28 129.8 213 38.0
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 1.5e-27 127.1 204 38.7
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 1.5e-27 127.1 170 40.0
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 1.5e-27 127.1 209 37.8
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.6e-27 126.3 213 37.6
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 7.5e-27 124.8 242 36.8
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 7.5e-27 124.8 242 36.8
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 7.5e-27 124.8 205 36.1
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 7.5e-27 124.8 205 36.1
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 7.5e-27 124.8 206 38.3
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 1.3e-26 124.0 198 37.9
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 1.3e-26 124.0 199 40.2
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 2.2e-26 123.2 200 36.0
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 2.9e-26 122.9 200 39.0
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 3.7e-26 122.5 201 37.8
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 4.9e-26 122.1 197 35.0
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 4.9e-26 122.1 202 35.6
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 6.4e-26 121.7 200 38.0
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.9e-25 120.2 176 39.2
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 2.4e-25 119.8 207 37.2
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 5.4e-25 118.6 179 37.4
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 5.4e-25 118.6 172 40.7
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 9.2e-25 117.9 205 32.7
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 2.0e-24 116.7 187 34.2
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.0e-24 116.7 212 34.4
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 2.0e-24 116.7 217 35.0
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 6.0e-24 115.2 211 36.5
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 1.0e-23 114.4 222 35.1
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 1.0e-23 114.4 200 33.5
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.7e-23 113.6 176 38.1
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 2.3e-23 113.2 201 37.3
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 3.9e-23 112.5 191 33.5
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 5.0e-23 112.1 193 34.2
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 5.0e-23 112.1 193 34.2
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 8.6e-23 111.3 200 33.0
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 8.6e-23 111.3 209 33.0
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 1.9e-22 110.2 210 34.8
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 1.9e-22 110.2 214 33.6
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 2.5e-22 109.8 193 33.7
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 2.5e-22 109.8 193 33.2
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 3.3e-22 109.4 200 32.5
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 1.2e-21 107.5 200 33.0
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 1.6e-21 107.1 200 33.0
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 2.1e-21 106.7 166 37.3
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 2.1e-21 106.7 200 34.0
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 2.8e-21 106.3 207 35.3
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 3.6e-21 105.9 200 32.5
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 6.2e-21 105.1 214 35.5
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 8.1e-21 104.8 207 35.3
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 1.1e-20 104.4 200 32.0
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 1.1e-20 104.4 200 32.0
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 1.1e-20 104.4 210 30.5
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 1.8e-20 103.6 175 38.3
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 1.8e-20 103.6 208 31.2
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 1.8e-20 103.6 196 32.7
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.1e-20 102.8 203 34.0
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.1e-20 102.8 203 34.0
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 8.9e-20 101.3 200 35.0
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 1.5e-19 100.5 202 31.2
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 1.5e-19 100.5 200 31.5
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 1.5e-19 100.5 200 31.0
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 2.0e-19 100.1 204 34.8
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 3.4e-19 99.4 205 30.2
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 4.4e-19 99.0 204 32.4
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 4.4e-19 99.0 105 49.5
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 4.4e-19 99.0 201 33.3
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 7.5e-19 98.2 219 32.9
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 9.9e-19 97.8 201 32.8
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 1.7e-18 97.1 203 32.0
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 1.7e-18 97.1 199 30.2
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 2.2e-18 96.7 200 30.5
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 2.9e-18 96.3 195 32.3
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 2.9e-18 96.3 196 32.7
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 8.3e-18 94.7 200 28.0
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 8.3e-18 94.7 200 28.0
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 8.3e-18 94.7 200 28.0
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.1e-17 94.4 115 43.5
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 1.9e-17 93.6 198 29.8
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 1.9e-17 93.6 195 31.3
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 4.1e-17 92.4 210 31.9
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 5.4e-17 92.0 196 31.6
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 5.4e-17 92.0 189 32.8
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 9.2e-17 91.3 197 33.5
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 1.2e-16 90.9 174 29.9
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 6.6e-15 85.1 199 31.7
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 2.5e-14 83.2 179 33.0
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 9.5e-14 81.3 198 29.8
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 2.8e-13 79.7 80 47.5
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.4e-11 72.8 171 34.5
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 9.9e-11 71.2 99 35.4
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 1.3e-10 70.9 177 31.6
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.7e-10 70.5 140 32.9
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 2.2e-10 70.1 131 35.1
SEGI_10997 Sequoiadendron giganteum HOM05D002590 ORTHO05D002763 4.9e-10 68.9 124 34.7
SEGI_25558 Sequoiadendron giganteum HOM05D002590 ORTHO05D002763 4.9e-10 68.9 124 34.7
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 1.4e-09 67.4 172 30.2
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.4e-09 66.6 141 34.8
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 7.1e-09 65.1 131 32.8
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 7.1e-09 65.1 137 32.1
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 9.2e-09 64.7 88 35.2
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 9.2e-09 64.7 129 31.8
Lalb_Chr23g0277361 Lupinus albus HOM05D003474 ORTHO05D003971 1.0e-07 61.2 56 62.5
PGSC0003DMG400001892 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.7e-07 60.5 130 34.6
Lalb_Chr23g0277401 Lupinus albus HOM05D003474 ORTHO05D003971 5.1e-07 58.9 48 60.4
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 5.1e-07 58.9 137 30.7
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 1.5e-06 57.4 137 32.1


User provided reference genes

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