Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 1.6e-114 416.0 200 100.0
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 1.4e-105 386.3 200 92.5
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 4.5e-104 381.3 200 90.0
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 3.2e-102 375.2 200 88.5
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 1.0e-100 370.2 193 90.7
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 3.1e-97 358.6 200 84.5
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 1.3e-95 353.2 200 83.0
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 1.7e-95 352.8 200 86.0
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 9.3e-94 347.1 200 82.0
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 4.6e-93 344.7 200 83.5
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 6.7e-92 340.9 200 80.0
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 8.7e-92 340.5 200 81.0
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 3.3e-91 338.6 200 80.5
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 1.6e-90 336.3 195 82.6
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 2.8e-90 335.5 200 81.0
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 3.7e-90 335.1 200 81.0
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 8.2e-90 334.0 200 79.5
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 2.4e-89 332.4 195 81.5
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 6.9e-89 330.9 200 80.0
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 2.0e-88 329.3 200 80.0
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 3.6e-85 318.5 195 77.9
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 3.0e-76 288.9 200 73.5
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 5.2e-68 261.5 202 63.9
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 3.3e-67 258.8 197 68.5
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 2.4e-65 252.7 203 62.6
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 4.2e-62 241.9 204 60.3
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 4.7e-61 238.4 200 61.0
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 8.0e-61 237.7 205 62.4
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 9.7e-59 230.7 201 59.7
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 6.3e-58 228.0 200 59.5
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 8.2e-58 227.6 204 62.7
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 8.5e-55 217.6 205 57.1
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 1.4e-49 200.3 167 59.3
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 1.7e-39 166.8 195 45.6
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.9e-39 166.0 197 45.2
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 5.0e-39 165.2 207 45.4
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 6.6e-39 164.9 200 45.5
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 6.6e-39 164.9 200 45.5
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 1.1e-38 164.1 197 45.2
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 1.1e-38 164.1 200 45.0
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 1.9e-38 163.3 200 45.0
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 1.9e-38 163.3 200 45.0
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 7.3e-38 161.4 197 44.7
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 7.3e-38 161.4 198 45.5
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 1.2e-37 160.6 200 44.5
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 3.6e-37 159.1 197 46.2
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 1.0e-36 157.5 197 43.1
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 1.8e-36 156.8 202 43.6
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 1.8e-36 156.8 199 44.7
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 2.3e-36 156.4 210 44.8
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 3.0e-36 156.0 197 44.2
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 4.0e-36 155.6 207 44.0
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 4.0e-36 155.6 199 43.7
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 7.5e-35 151.4 210 42.9
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 1.3e-34 150.6 201 42.8
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 2.2e-34 149.8 199 42.7
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 2.9e-34 149.4 205 45.4
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 2.9e-34 149.4 198 44.4
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 3.7e-34 149.1 200 43.0
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 8.3e-34 147.9 196 43.9
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.4e-33 146.4 206 42.7
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 3.2e-33 146.0 213 45.1
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 3.2e-33 146.0 199 43.2
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 1.6e-32 143.7 200 43.0
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 1.6e-32 143.7 197 42.1
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 2.7e-32 142.9 205 42.0
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 7.8e-32 141.4 204 40.2
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 1.7e-31 140.2 193 42.0
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.3e-31 139.8 214 40.7
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 3.9e-31 139.0 210 43.8
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 5.0e-31 138.7 194 40.2
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 1.1e-30 137.5 196 41.3
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 1.9e-30 136.7 196 40.3
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.5e-30 136.3 212 40.6
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 3.3e-30 136.0 211 39.3
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 4.3e-30 135.6 208 39.4
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 9.5e-30 134.4 210 38.6
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 1.2e-29 134.0 211 39.3
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.6e-29 133.7 212 39.6
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 1.6e-29 133.7 209 42.1
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 1.1e-28 131.0 203 41.9
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 1.4e-28 130.6 198 40.4
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 1.8e-28 130.2 238 36.6
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.3e-28 129.8 212 39.2
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 3.1e-28 129.4 200 39.5
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 3.1e-28 129.4 170 40.0
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 3.1e-28 129.4 204 36.3
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 3.1e-28 129.4 204 36.3
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 3.1e-28 129.4 209 37.8
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 1.2e-27 127.5 197 39.1
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.6e-27 126.3 175 41.7
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 3.4e-27 125.9 206 42.2
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 4.4e-27 125.6 209 36.4
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 9.8e-27 124.4 208 39.9
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.3e-26 124.0 178 39.3
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 1.7e-26 123.6 205 33.2
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 2.2e-26 123.2 205 35.1
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 2.9e-26 122.9 240 35.4
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 2.9e-26 122.9 240 35.4
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 2.9e-26 122.9 202 38.1
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 2.9e-26 122.9 210 37.1
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 3.7e-26 122.5 172 41.9
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 6.4e-26 121.7 208 38.0
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.9e-25 120.2 211 36.0
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 2.4e-25 119.8 211 35.1
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 4.1e-25 119.0 190 33.7
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 7.0e-25 118.2 210 39.0
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 1.6e-24 117.1 214 34.6
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 2.0e-24 116.7 225 34.7
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 3.5e-24 115.9 213 35.2
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 3.5e-24 115.9 193 34.2
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 3.5e-24 115.9 193 34.2
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 4.6e-24 115.5 187 33.7
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 4.6e-24 115.5 176 38.6
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 1.0e-23 114.4 210 36.2
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 1.0e-23 114.4 166 39.2
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 1.0e-23 114.4 193 34.7
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 1.3e-23 114.0 210 36.7
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 1.3e-23 114.0 223 35.0
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 2.3e-23 113.2 193 34.7
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 3.0e-23 112.8 218 35.3
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 6.6e-23 111.7 209 34.9
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 8.6e-23 111.3 194 36.1
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 1.5e-22 110.5 199 34.2
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 2.5e-22 109.8 200 31.5
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 5.6e-22 108.6 209 34.4
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 7.3e-22 108.2 206 34.5
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 9.5e-22 107.8 198 31.8
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 9.5e-22 107.8 211 32.7
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 1.2e-21 107.5 206 33.5
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 1.6e-21 107.1 204 36.8
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 2.1e-21 106.7 200 30.5
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 2.1e-21 106.7 200 30.5
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 2.1e-21 106.7 205 31.7
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 2.1e-21 106.7 193 33.2
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 3.6e-21 105.9 208 29.8
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 3.6e-21 105.9 203 33.5
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 3.6e-21 105.9 201 34.3
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 4.7e-21 105.5 206 34.0
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 6.2e-21 105.1 175 37.7
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 1.1e-20 104.4 199 30.7
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 1.4e-20 104.0 199 32.2
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 2.3e-20 103.2 198 31.3
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 3.1e-20 102.8 200 29.5
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 3.1e-20 102.8 203 32.5
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 5.2e-20 102.1 199 30.7
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 5.2e-20 102.1 199 30.7
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 5.2e-20 102.1 199 30.7
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 5.2e-20 102.1 203 33.5
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 1.2e-19 100.9 197 34.5
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 1.5e-19 100.5 196 31.6
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 2.0e-19 100.1 195 31.8
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 2.0e-19 100.1 211 28.4
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 5.8e-19 98.6 212 33.0
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 7.5e-19 98.2 201 30.8
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 1.7e-18 97.1 173 30.6
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 1.7e-18 97.1 106 48.1
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 8.3e-18 94.7 195 29.2
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 8.3e-18 94.7 195 29.2
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 1.1e-17 94.4 156 37.2
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 1.4e-17 94.0 178 30.3
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.4e-17 94.0 202 33.7
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 2.1e-16 90.1 198 29.8
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 6.0e-16 88.6 179 33.5
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 3.3e-14 82.8 207 28.0
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 3.6e-13 79.3 80 48.8
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 4.7e-13 79.0 175 33.1
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 4.0e-12 75.9 140 34.3
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 1.5e-11 73.9 99 35.4
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 1.5e-11 73.9 131 36.6
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.2e-10 70.1 141 35.5
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 3.8e-10 69.3 137 32.8
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 4.9e-10 68.9 131 34.4
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 8.4e-10 68.2 129 32.6
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 1.4e-09 67.4 88 35.2
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 1.4e-09 67.4 172 29.7
PGSC0003DMG400001892 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.7e-08 63.2 130 35.4
Lalb_Chr23g0277361 Lupinus albus HOM05D003474 ORTHO05D003971 3.5e-08 62.8 56 66.1
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 7.8e-08 61.6 137 30.7
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 7.8e-08 61.6 137 32.8
Lalb_Chr23g0277401 Lupinus albus HOM05D003474 ORTHO05D003971 3.0e-07 59.7 54 59.3
Nitab4.5_0000897g0040 Nicotiana tabacum HOM05D003474 ORTHO05D003971 5.6e-06 55.5 100 33.0


User provided reference genes

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