Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 2.5e-95 352.1 173 100.0
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 1.5e-79 299.7 200 76.5
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 1.5e-76 289.7 200 73.5
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 1.4e-74 283.1 200 71.0
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 7.8e-73 277.3 200 69.5
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 1.0e-72 276.9 200 72.5
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 3.6e-70 268.5 193 70.5
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 6.9e-69 264.2 200 69.0
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 6.9e-69 264.2 200 70.5
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 2.6e-68 262.3 200 66.5
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 1.7e-67 259.6 200 68.5
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 1.4e-66 256.5 200 68.5
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 2.4e-66 255.8 200 67.0
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 3.2e-66 255.4 200 67.0
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 8.7e-64 247.3 200 63.5
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.5e-63 246.5 200 62.5
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 1.6e-62 243.0 195 64.6
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 8.1e-62 240.7 195 66.2
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.4e-61 240.0 200 62.0
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 1.8e-61 239.6 195 64.1
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 6.9e-61 237.7 200 61.5
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.0e-59 233.8 200 61.0
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 1.2e-44 183.7 179 55.3
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 3.8e-43 178.7 200 49.0
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 1.6e-41 173.3 203 50.2
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 1.1e-39 167.2 198 47.5
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 1.3e-38 163.7 194 47.4
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 8.2e-38 161.0 198 46.0
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 4.1e-37 158.7 199 45.7
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 1.3e-35 153.7 197 47.2
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 8.5e-35 151.0 197 47.7
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 1.4e-32 143.7 202 46.5
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 2.7e-25 119.4 165 42.4
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 5.2e-24 115.2 205 35.6
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 4.4e-23 112.1 195 36.4
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 7.5e-23 111.3 195 37.4
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 1.3e-22 110.5 195 37.4
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 1.3e-22 110.5 195 37.4
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 3.7e-22 109.0 203 36.0
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 3.7e-22 109.0 195 36.9
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 3.7e-22 109.0 195 36.9
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 4.8e-22 108.6 195 35.9
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 6.3e-22 108.2 196 35.2
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 6.3e-22 108.2 196 35.2
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 1.1e-21 107.5 194 35.6
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.8e-21 106.7 196 34.7
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.4e-21 106.3 196 34.7
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 2.4e-21 106.3 193 35.8
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 2.4e-21 106.3 197 35.0
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 3.1e-21 105.9 195 34.4
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 3.1e-21 105.9 199 34.2
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 7.0e-21 104.8 198 33.3
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 2.0e-20 103.2 200 34.0
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 2.6e-20 102.8 205 34.1
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 3.5e-20 102.4 203 35.5
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 3.5e-20 102.4 197 34.5
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 4.5e-20 102.1 194 33.5
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 4.5e-20 102.1 204 36.8
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 4.5e-20 102.1 197 35.0
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 7.7e-20 101.3 196 34.2
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 7.7e-20 101.3 197 33.5
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 7.7e-20 101.3 197 34.0
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 1.3e-19 100.5 198 37.4
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.7e-19 100.1 196 34.2
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 2.9e-19 99.4 208 33.7
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 3.8e-19 99.0 195 33.3
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 1.5e-18 97.1 197 33.5
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 4.2e-18 95.5 196 35.2
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 9.4e-18 94.4 193 34.7
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.1e-17 93.2 212 33.0
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 4.7e-17 92.0 210 32.9
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 4.7e-17 92.0 200 34.0
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 6.1e-17 91.7 193 33.2
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 8.0e-17 91.3 196 35.2
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.0e-16 90.9 210 31.0
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 1.8e-16 90.1 238 29.8
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 3.0e-16 89.4 194 30.9
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 3.0e-16 89.4 190 33.2
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 4.0e-16 89.0 192 33.3
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 5.2e-16 88.6 198 31.8
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 8.8e-16 87.8 209 31.1
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 8.8e-16 87.8 202 30.2
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.2e-15 87.4 210 30.5
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 1.2e-15 87.4 190 33.2
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 1.5e-15 87.0 203 34.5
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.0e-15 86.7 209 31.1
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 2.0e-15 86.7 82 51.2
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 5.7e-15 85.1 207 29.5
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 2.2e-14 83.2 203 29.1
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 2.2e-14 83.2 203 29.1
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.8e-14 82.8 203 34.0
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 3.7e-14 82.4 209 29.2
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 3.7e-14 82.4 200 33.5
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 4.8e-14 82.0 196 30.1
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 6.3e-14 81.6 197 27.4
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 6.3e-14 81.6 196 31.6
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 1.1e-13 80.9 194 32.0
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 1.1e-13 80.9 207 30.4
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 1.4e-13 80.5 196 33.2
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.8e-13 80.1 86 48.8
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.8e-13 80.1 90 46.7
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 2.4e-13 79.7 185 28.1
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 2.4e-13 79.7 163 28.8
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.1e-13 79.3 196 32.1
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.1e-13 79.3 196 32.1
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 3.1e-13 79.3 198 27.8
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 7.0e-13 78.2 217 26.7
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 7.0e-13 78.2 198 28.8
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 9.1e-13 77.8 191 29.3
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 9.1e-13 77.8 80 46.2
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 1.2e-12 77.4 84 42.9
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 1.6e-12 77.0 240 28.3
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 1.6e-12 77.0 240 28.3
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 1.6e-12 77.0 187 29.4
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 1.6e-12 77.0 187 29.4
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 1.6e-12 77.0 197 26.9
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 1.6e-12 77.0 197 27.4
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 2.0e-12 76.6 199 27.6
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 2.0e-12 76.6 187 29.9
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.0e-12 76.6 92 42.4
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.0e-12 76.6 199 29.1
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.7e-12 76.3 85 47.1
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 4.5e-12 75.5 209 27.8
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 4.5e-12 75.5 187 29.9
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 7.7e-12 74.7 84 39.3
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 1.0e-11 74.3 119 31.9
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 1.0e-11 74.3 201 30.3
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.0e-11 74.3 203 27.1
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 1.3e-11 73.9 167 31.7
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 1.7e-11 73.6 86 41.9
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 2.2e-11 73.2 202 27.2
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 2.9e-11 72.8 205 26.8
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 3.8e-11 72.4 227 27.3
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 3.8e-11 72.4 83 38.6
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 6.5e-11 71.6 85 44.7
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 6.5e-11 71.6 208 26.9
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 6.5e-11 71.6 84 36.9
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 6.5e-11 71.6 84 36.9
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 8.5e-11 71.2 84 35.7
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 1.1e-10 70.9 84 35.7
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 1.1e-10 70.9 84 35.7
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 1.1e-10 70.9 84 35.7
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 1.9e-10 70.1 90 36.7
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 1.9e-10 70.1 192 29.7
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 3.2e-10 69.3 91 33.0
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 4.2e-10 68.9 102 29.4
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 5.5e-10 68.6 99 30.3
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 5.5e-10 68.6 201 28.9
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 9.4e-10 67.8 90 35.6
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 1.2e-09 67.4 171 29.8
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 1.6e-09 67.0 90 33.3
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 2.1e-09 66.6 90 30.0
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 2.7e-09 66.2 90 30.0
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 2.7e-09 66.2 90 33.3
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 2.7e-09 66.2 90 33.3
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 4.7e-09 65.5 90 30.0
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 4.7e-09 65.5 90 30.0
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 6.1e-09 65.1 81 37.0
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 1.8e-08 63.5 85 41.2
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 1.8e-08 63.5 225 25.8
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 1.8e-08 63.5 164 29.9
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 1.8e-08 63.5 95 41.1
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 3.0e-08 62.8 87 36.8
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.0e-08 62.8 84 41.7
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 4.0e-08 62.4 194 26.8
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 1.5e-07 60.5 88 35.2
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 2.0e-07 60.1 79 35.4
Lalb_Chr23g0277361 Lupinus albus HOM05D003474 ORTHO05D003971 2.0e-07 60.1 56 60.7
Lalb_Chr23g0277401 Lupinus albus HOM05D003474 ORTHO05D003971 1.7e-06 57.0 48 58.3


User provided reference genes

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