Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 6.2e-114 414.1 200 100.0
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 1.8e-105 386.0 200 92.5
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 4.6e-101 371.3 200 87.5
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 7.9e-101 370.5 200 87.0
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 1.4e-97 359.8 192 88.5
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 1.2e-96 356.7 200 84.5
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 1.5e-96 356.3 200 87.0
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 2.6e-96 355.5 200 84.0
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 4.2e-94 348.2 200 84.5
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 1.8e-92 342.8 200 82.0
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 5.1e-92 341.3 200 81.5
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 2.5e-91 339.0 200 80.0
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 7.4e-91 337.4 200 80.5
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 6.3e-90 334.3 195 82.1
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 6.3e-90 334.3 200 81.0
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 3.1e-89 332.0 195 81.5
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 4.1e-89 331.6 200 79.0
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 4.5e-88 328.2 200 79.0
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 2.2e-87 325.9 200 78.5
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 3.2e-86 322.0 200 78.0
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 4.2e-86 321.6 195 79.0
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 2.9e-79 298.9 200 76.5
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 1.1e-67 260.4 197 68.5
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 4.1e-65 251.9 202 61.9
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 1.1e-62 243.8 203 61.1
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 1.0e-60 237.3 194 60.3
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 3.0e-60 235.7 200 60.0
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 1.7e-58 229.9 197 61.9
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 6.3e-58 228.0 201 58.7
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 5.3e-57 224.9 200 58.5
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 2.7e-56 222.6 204 61.3
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 6.5e-55 218.0 197 57.9
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 1.1e-49 200.7 167 60.5
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 5.9e-40 168.3 197 45.7
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 5.9e-40 168.3 197 45.7
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 1.7e-39 166.8 197 45.2
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 1.7e-39 166.8 197 45.2
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 1.1e-38 164.1 197 44.2
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 1.1e-38 164.1 205 43.9
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 1.1e-38 164.1 197 44.7
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 1.9e-38 163.3 197 45.2
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.9e-38 163.3 198 46.5
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.5e-38 162.9 197 45.2
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 5.6e-38 161.8 195 44.6
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.6e-37 160.2 198 45.5
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 3.6e-37 159.1 197 43.1
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 6.1e-37 158.3 197 45.2
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 1.0e-36 157.5 202 43.6
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 1.4e-36 157.1 199 43.7
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 3.0e-36 156.0 205 42.4
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 5.2e-36 155.2 197 44.2
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 5.2e-36 155.2 204 44.1
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 1.2e-35 154.1 205 42.4
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 2.9e-34 149.4 196 43.4
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 2.9e-34 149.4 210 41.9
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 6.4e-34 148.3 199 41.7
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 1.1e-33 147.5 200 46.0
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 1.4e-33 147.1 199 41.2
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 3.2e-33 146.0 200 41.5
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 3.2e-33 146.0 197 41.1
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 3.2e-33 146.0 195 43.1
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 4.1e-33 145.6 200 42.0
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 4.1e-33 145.6 200 42.0
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 7.0e-33 144.8 200 42.5
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 7.0e-33 144.8 199 40.2
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 2.7e-32 142.9 205 43.4
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 6.0e-32 141.7 196 39.8
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 6.0e-32 141.7 205 42.0
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 6.0e-32 141.7 214 40.7
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 5.0e-31 138.7 212 39.6
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 5.0e-31 138.7 194 39.7
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 5.0e-31 138.7 196 42.3
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 6.6e-31 138.3 211 39.3
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 6.6e-31 138.3 197 43.1
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 1.9e-30 136.7 194 42.3
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.5e-30 136.3 212 39.2
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 5.6e-30 135.2 203 42.9
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 1.2e-29 134.0 199 40.7
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 1.6e-29 133.7 198 40.9
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 2.8e-29 132.9 229 37.1
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 2.8e-29 132.9 211 37.9
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 2.8e-29 132.9 209 38.3
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 4.7e-29 132.1 212 38.2
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 1.1e-28 131.0 201 36.8
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 1.4e-28 130.6 170 40.0
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 1.8e-28 130.2 197 38.6
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 3.1e-28 129.4 199 39.7
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 6.8e-28 128.3 204 36.3
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 6.8e-28 128.3 204 36.3
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 6.8e-28 128.3 198 41.9
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 8.9e-28 127.9 200 39.0
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 8.9e-28 127.9 175 41.7
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.6e-27 126.3 178 39.9
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 4.4e-27 125.6 200 38.5
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 7.5e-27 124.8 202 35.1
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 1.3e-26 124.0 201 37.3
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 1.3e-26 124.0 198 38.4
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.9e-26 122.9 211 36.0
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.9e-26 122.9 206 37.4
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 4.9e-26 122.1 205 34.1
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 8.3e-26 121.3 190 33.7
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.4e-25 120.6 207 35.3
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 3.2e-25 119.4 187 33.7
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 3.2e-25 119.4 172 40.1
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 4.1e-25 119.0 176 39.2
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 4.1e-25 119.0 199 35.2
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 1.2e-24 117.5 231 34.2
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 1.2e-24 117.5 231 34.2
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 1.2e-24 117.5 213 34.3
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 2.0e-24 116.7 166 39.2
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 2.0e-24 116.7 214 34.6
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 3.5e-24 115.9 212 33.5
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 4.6e-24 115.5 210 36.7
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 4.6e-24 115.5 193 34.7
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 6.0e-24 115.2 223 34.1
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 6.0e-24 115.2 193 34.2
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 6.0e-24 115.2 193 34.2
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 7.8e-24 114.8 210 38.6
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 1.0e-23 114.4 193 34.7
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 1.3e-23 114.0 225 34.2
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 2.3e-23 113.2 201 34.3
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 3.0e-23 112.8 199 34.7
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 3.9e-23 112.5 209 35.4
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 3.9e-23 112.5 199 34.2
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 5.0e-23 112.1 194 36.6
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 8.6e-23 111.3 198 32.3
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 8.6e-23 111.3 207 36.7
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 2.5e-22 109.8 175 37.7
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.3e-22 109.4 211 36.0
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 4.3e-22 109.0 201 31.8
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 5.6e-22 108.6 206 32.5
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 7.3e-22 108.2 193 32.6
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 9.5e-22 107.8 200 32.0
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 9.5e-22 107.8 206 35.0
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.2e-21 107.5 203 35.5
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.2e-21 107.5 203 35.5
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 1.2e-21 107.5 200 34.0
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 1.6e-21 107.1 200 31.5
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 2.1e-21 106.7 198 31.8
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 2.1e-21 106.7 200 33.5
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 2.8e-21 106.3 211 32.2
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 4.7e-21 105.5 200 30.5
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 6.2e-21 105.1 199 32.2
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 6.2e-21 105.1 199 32.2
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 6.2e-21 105.1 199 32.2
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 1.1e-20 104.4 202 35.6
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 1.8e-20 103.6 203 32.5
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 2.3e-20 103.2 201 34.8
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 4.0e-20 102.4 200 29.5
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 4.0e-20 102.4 200 29.5
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 3.4e-19 99.4 205 28.8
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 3.4e-19 99.4 200 29.0
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 5.8e-19 98.6 173 30.6
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 5.8e-19 98.6 212 33.0
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 7.5e-19 98.2 198 29.8
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 2.9e-18 96.3 192 31.2
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 3.7e-18 95.9 200 28.5
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 4.9e-18 95.5 153 36.6
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 1.1e-17 94.4 105 46.7
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 1.4e-17 94.0 192 29.7
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 3.2e-17 92.8 198 30.3
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 5.4e-17 92.0 198 30.3
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 5.4e-17 92.0 202 32.7
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 7.1e-17 91.7 194 30.4
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 1.2e-16 90.9 192 30.2
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.5e-16 89.4 115 40.9
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 6.0e-16 88.6 183 33.3
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 6.6e-15 85.1 202 29.7
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 2.8e-13 79.7 80 47.5
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.4e-12 76.6 140 33.6
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 1.2e-11 74.3 131 37.4
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.0e-11 73.6 141 36.9
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 3.4e-11 72.8 175 33.1
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 3.4e-11 72.8 137 34.3
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 4.4e-11 72.4 99 33.3
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 3.8e-10 69.3 131 35.1
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 4.9e-10 68.9 176 30.1
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 4.9e-10 68.9 129 33.3
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 4.1e-09 65.9 88 33.0
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 7.1e-09 65.1 137 32.1
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 7.1e-09 65.1 137 34.3
PGSC0003DMG400001892 Solanum tuberosum HOM05D003474 ORTHO05D003971 7.1e-09 65.1 130 36.2
Lalb_Chr23g0277361 Lupinus albus HOM05D003474 ORTHO05D003971 2.3e-07 60.1 56 58.9
Lalb_Chr23g0277401 Lupinus albus HOM05D003474 ORTHO05D003971 6.6e-07 58.5 48 60.4
Nitab4.5_0000897g0040 Nicotiana tabacum HOM05D003474 ORTHO05D003971 4.3e-06 55.8 101 30.7


User provided reference genes

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