Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17809 Trifolium pratense HOM05D006191 ORTHO05D007660 4.3e-39 164.5 100 100.0
Lalb_Chr04g0264081 Lupinus albus HOM05D006191 ORTHO05D007660 2.2e-19 99.0 68 91.2
Psat5g217760 Pisum sativum HOM05D006191 ORTHO05D007660 2.2e-19 99.0 68 91.2
Medtr3g017440 Medicago truncatula HOM05D006191 ORTHO05D007660 1.9e-18 95.9 68 89.7
Lalb_Chr25g0282111 Lupinus albus HOM05D006191 ORTHO05D007660 2.4e-18 95.5 68 88.2
Glyma.04G138500 Glycine max HOM05D006191 ORTHO05D007660 5.4e-18 94.4 68 86.8
arahy.Tifrunner.gnm1.ann1.HDQ2FX Arachis hypogaea HOM05D006191 ORTHO05D007660 7.1e-18 94.0 68 86.8
Phvul.005G027500 Phaseolus vulgaris HOM05D006191 ORTHO05D007660 9.3e-18 93.6 68 86.8
arahy.Tifrunner.gnm1.ann1.MB5P1Q Arachis hypogaea HOM05D006191 ORTHO05D007660 2.1e-17 92.4 68 85.3
Lj3g0010990 Lotus japonicus HOM05D006191 ORTHO05D007660 2.1e-17 92.4 68 86.8
TPR.G8494 Trifolium pratense HOM05D006191 ORTHO05D007660 3.5e-17 91.7 68 83.8
Medtr3g434780 Medicago truncatula HOM05D006191 ORTHO05D007660 6.0e-17 90.9 68 83.8
CDE02G2705 Ceratophyllum demersum HOM05D006191 ORTHO05D007660 7.9e-17 90.5 68 79.4
Glyma.18G117700 Glycine max HOM05D006191 ORTHO05D007660 7.9e-17 90.5 68 82.4
PGR031G0246 Punica granatum HOM05D006191 ORTHO05D007660 7.9e-17 90.5 68 80.9
Atru.chr12.1349 Acer truncatum HOM05D006191 ORTHO05D007660 1.3e-16 89.7 68 82.4
Eucgr.J01186 Eucalyptus grandis HOM05D006191 ORTHO05D007660 1.3e-16 89.7 68 79.4
MBI13_g01622_MAGBIO Magnolia biondii HOM05D006191 ORTHO05D007660 1.3e-16 89.7 68 82.4
Thecc.10G162100 Theobroma cacao HOM05D006191 ORTHO05D007660 1.8e-16 89.4 68 82.4
Glyma.08G302200 Glycine max HOM05D006191 ORTHO05D007660 2.3e-16 89.0 68 80.9
Lj6g0026433 Lotus japonicus HOM05D006191 ORTHO05D007660 3.9e-16 88.2 68 77.9
Manes.01G180500 Manihot esculenta HOM05D006191 ORTHO05D007660 3.9e-16 88.2 68 80.9
Oeu030629.1 Olea europaea HOM05D006191 ORTHO05D007660 3.9e-16 88.2 68 82.4
AagrBONN_evm.TU.Sc2ySwM_362.136 Anthoceros agrestis HOM05D006191 ORTHO05D007660 8.7e-16 87.0 68 79.4
HPP92_025477 Vanilla planifolia HOM05D006191 ORTHO05D007660 8.7e-16 87.0 68 79.4
COL.COLO4_04799 Corchorus olitorius HOM05D006191 ORTHO05D007660 1.1e-15 86.7 68 79.4
DCAR_002114 Daucus carota HOM05D006191 ORTHO05D007660 1.1e-15 86.7 68 77.9
Lalb_Chr07g0183161 Lupinus albus HOM05D006191 ORTHO05D007660 1.1e-15 86.7 68 80.9
GSVIVG01037255001 Vitis vinifera HOM05D006191 ORTHO05D007660 1.5e-15 86.3 68 80.9
CSS0014439 Camellia sinensis var. sinensis HOM05D006191 ORTHO05D007660 1.9e-15 85.9 68 79.4
Duzib106G0217 Durio zibethinus HOM05D006191 ORTHO05D007660 1.9e-15 85.9 68 79.4
Duzib128G0357 Durio zibethinus HOM05D006191 ORTHO05D007660 1.9e-15 85.9 68 79.4
Gohir.A10G183900 Gossypium hirsutum HOM05D006191 ORTHO05D007660 1.9e-15 85.9 68 79.4
Gohir.D10G191200 Gossypium hirsutum HOM05D006191 ORTHO05D007660 1.9e-15 85.9 68 79.4
Gohir.D13G004600 Gossypium hirsutum HOM05D006191 ORTHO05D007660 1.9e-15 85.9 68 79.4
Gorai.011G214000 Gossypium raimondii HOM05D006191 ORTHO05D007660 1.9e-15 85.9 68 79.4
Peaxi162Scf00004g04011 Petunia axillaris HOM05D006191 ORTHO05D007660 1.9e-15 85.9 68 76.5
TAR623G0607 Trochodendron aralioides HOM05D006191 ORTHO05D007660 1.9e-15 85.9 68 79.4
CAN.G484.24 Capsicum annuum HOM05D006191 ORTHO05D007660 2.5e-15 85.5 68 76.5
Duzib114G0719 Durio zibethinus HOM05D006191 ORTHO05D007660 2.5e-15 85.5 68 79.4
Potri.009G071900 Populus trichocarpa HOM05D006191 ORTHO05D007660 2.5e-15 85.5 68 77.9
Sabra09G0054200 Salix brachista HOM05D006191 ORTHO05D007660 2.5e-15 85.5 68 77.9
Actinidia23986 Actinidia chinensis HOM05D006191 ORTHO05D007660 3.3e-15 85.1 68 77.9
CiPaw.14G114100 Carya illinoinensis HOM05D006191 ORTHO05D007660 3.3e-15 85.1 68 77.9
Potri.001G277100 Populus trichocarpa HOM05D006191 ORTHO05D007660 3.3e-15 85.1 68 76.5
THA.LOC104819131 Tarenaya hassleriana HOM05D006191 ORTHO05D007660 3.3e-15 85.1 68 77.9
TWI38G0245 Tripterygium wilfordii HOM05D006191 ORTHO05D007660 3.3e-15 85.1 68 76.5
TWI63G0884 Tripterygium wilfordii HOM05D006191 ORTHO05D007660 3.3e-15 85.1 68 76.5
Hma1.2p1_0115F.1_g055930 Hydrangea macrophylla HOM05D006191 ORTHO05D007660 4.3e-15 84.7 68 76.5
Sopen12g034350 Solanum pennellii HOM05D006191 ORTHO05D007660 4.3e-15 84.7 68 76.5
Atru.chr3.2798 Acer truncatum HOM05D006191 ORTHO05D007660 5.6e-15 84.3 64 84.4
MELO3C014567.2 Cucumis melo HOM05D006191 ORTHO05D007660 5.6e-15 84.3 68 77.9
CsaV3_6G039080 Cucumis sativus L. HOM05D006191 ORTHO05D007660 5.6e-15 84.3 68 77.9
Lsat_1_v5_gn_2_33900 Lactuca sativa HOM05D006191 ORTHO05D007660 5.6e-15 84.3 68 75.0
Ciclev10017371m.g Citrus clementina HOM05D006191 ORTHO05D007660 7.4e-15 84.0 64 82.8
Gorai.013G005000 Gossypium raimondii HOM05D006191 ORTHO05D007660 7.4e-15 84.0 68 77.9
Nn2g14883 Nelumbo nucifera HOM05D006191 ORTHO05D007660 7.4e-15 84.0 68 76.5
Nn7g36644 Nelumbo nucifera HOM05D000965 ORTHO05D000842 7.4e-15 84.0 68 76.5
Oeu001494.1 Olea europaea HOM05D006191 ORTHO05D007660 7.4e-15 84.0 68 77.9
Sopen11g024870 Solanum pennellii HOM05D006191 ORTHO05D007660 7.4e-15 84.0 68 76.5
PGSC0003DMG400031241 Solanum tuberosum HOM05D006191 ORTHO05D007660 7.4e-15 84.0 68 76.5
Dinv05064 Davidia involucrata HOM05D006191 ORTHO05D007660 9.6e-15 83.6 68 75.0
Sed0001199 Sechium edule HOM05D006191 ORTHO05D007660 9.6e-15 83.6 68 76.5
Sc11g0006400 Simmondsia chinensis HOM05D006191 ORTHO05D007660 9.6e-15 83.6 68 77.9
THA.LOC104825593 Tarenaya hassleriana HOM05D006191 ORTHO05D007660 9.6e-15 83.6 68 76.5
CARHR082640 Cardamine hirsuta HOM05D006191 ORTHO05D007660 1.3e-14 83.2 68 73.5
Cpa.g.sc3.359 Carica papaya HOM05D006191 ORTHO05D007660 1.3e-14 83.2 68 76.5
PSO339G4970 Papaver somniferum HOM05D006191 ORTHO05D007660 1.3e-14 83.2 68 76.5
PSO384G4772 Papaver somniferum HOM05D006191 ORTHO05D007660 1.3e-14 83.2 68 76.5
Aa31LG5G18460 Aethionema arabicum HOM05D006191 ORTHO05D007660 1.6e-14 82.8 68 75.0
EL10Ac2g02816 Beta vulgaris HOM05D006191 ORTHO05D007660 1.6e-14 82.8 68 73.5
CANSAT54G1797 Cannabis sativa HOM05D006191 ORTHO05D007660 2.1e-14 82.4 68 75.0
Carub.0003s0749 Capsella rubella HOM05D006191 ORTHO05D007660 2.1e-14 82.4 67 73.1
Nitab4.5_0004018g0100 Nicotiana tabacum HOM05D006191 ORTHO05D007660 2.1e-14 82.4 68 73.5
Migut.D00650 Erythranthe guttata HOM05D006191 ORTHO05D007660 2.8e-14 82.0 68 73.5
Thhalv10022475m.g Eutrema salsugineum HOM05D006191 ORTHO05D007660 2.8e-14 82.0 68 76.5
QL01p017491 Quercus lobata HOM05D006191 ORTHO05D007660 2.8e-14 82.0 68 76.5
Solyc11g150142.1 Solanum lycopersicum HOM05D006191 ORTHO05D007660 2.8e-14 82.0 68 69.1
Zm00001eb432230 Zea mays HOM05D006191 ORTHO05D007660 3.7e-14 81.6 65 75.4
Thhalv10021870m.g Eutrema salsugineum HOM05D006191 ORTHO05D007660 4.8e-14 81.3 68 75.0
Potri.003G197801 Populus trichocarpa HOM05D006191 ORTHO05D007660 4.8e-14 81.3 68 75.0
Potri.T125106 Populus trichocarpa HOM05D006191 ORTHO05D007660 4.8e-14 81.3 68 75.0
CDE04G1776 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 6.2e-14 80.9 68 75.0
HanXRQChr06g0182571 Helianthus annuus HOM05D006191 ORTHO05D007660 6.2e-14 80.9 68 72.1
BcaB04g21265 Brassica carinata HOM05D006191 ORTHO05D007660 8.1e-14 80.5 66 74.2
CAN.G1850.1 Capsicum annuum HOM05D006191 ORTHO05D007660 1.1e-13 80.1 68 73.5
Solyc12g099705.1 Solanum lycopersicum HOM05D006191 ORTHO05D007660 1.8e-13 79.3 68 73.5
Zm00001eb068350 Zea mays HOM05D006191 ORTHO05D007660 5.3e-13 77.8 59 78.0
Cc01_g05600 Coffea canephora HOM05D006191 ORTHO05D007660 6.9e-13 77.4 68 73.5
RcHm_v2.0_Chr5g0050711 Rosa chinensis HOM05D006191 ORTHO05D007660 6.9e-13 77.4 68 72.1
ECA238G0093 Erigeron canadensis HOM05D006191 ORTHO05D007660 1.2e-12 76.6 68 67.6
Mapoly0046s0044 Marchantia polymorpha HOM05D006191 ORTHO05D007660 1.2e-12 76.6 68 75.0
A03p35550 Brassica napus HOM05D006191 ORTHO05D007660 1.5e-12 76.3 62 75.8
A05p40330 Brassica napus HOM05D006191 ORTHO05D007660 1.5e-12 76.3 64 71.9
C03p43190 Brassica napus HOM05D006191 ORTHO05D007660 1.5e-12 76.3 62 75.8
BolC3t16588H Brassica oleracea HOM05D006191 ORTHO05D007660 1.5e-12 76.3 62 75.8
BraA03t12731Z Brassica rapa HOM05D006191 ORTHO05D007660 1.5e-12 76.3 62 75.8
BcaC09g47961 Brassica carinata HOM05D006191 ORTHO05D007660 2.0e-12 75.9 64 73.4
MD00G1126200 Malus domestica HOM05D006191 ORTHO05D007660 2.6e-12 75.5 65 72.3
MD00G1154200 Malus domestica HOM05D006191 ORTHO05D007660 2.6e-12 75.5 65 72.3
Prupe.4G268400 Prunus persica HOM05D006191 ORTHO05D007660 2.6e-12 75.5 65 72.3
Sp3g06830 Schrenkiella parvula HOM05D006191 ORTHO05D007660 3.4e-12 75.1 65 70.8
Pp3c9_12820 Physcomitrium patens HOM05D006191 ORTHO05D007660 4.5e-12 74.7 68 61.8
C05p59410 Brassica napus HOM05D006191 ORTHO05D007660 5.8e-12 74.3 62 71.0
BolC5t34598H Brassica oleracea HOM05D006191 ORTHO05D007660 5.8e-12 74.3 62 71.0
Sabra16G0171200 Salix brachista HOM05D006191 ORTHO05D007660 7.6e-12 73.9 71 69.0
SMO301G0059 Selaginella moellendorffii HOM05D006191 ORTHO05D007660 7.6e-12 73.9 68 70.6
AT3G07910 Arabidopsis thaliana HOM05D006191 ORTHO05D007660 1.0e-11 73.6 68 69.1
FvH4_3g28030 Fragaria vesca HOM05D006191 ORTHO05D007660 1.0e-11 73.6 68 69.1
FAN16G3748 Fragaria x ananassa HOM05D006191 ORTHO05D007660 1.0e-11 73.6 68 69.1
FAN21G2777 Fragaria x ananassa HOM05D006191 ORTHO05D007660 1.0e-11 73.6 68 69.1
ATR0745G066 Amborella trichopoda HOM05D006191 ORTHO05D007660 1.3e-11 73.2 69 72.5
BcaC09g47957 Brassica carinata HOM05D006191 ORTHO05D007660 1.7e-11 72.8 65 70.8
BolC1t05519H Brassica oleracea HOM05D006191 ORTHO05D007660 1.7e-11 72.8 65 70.8
BcaC05g29581 Brassica carinata HOM05D006191 ORTHO05D007660 2.2e-11 72.4 64 67.2
BraA01t04352Z Brassica rapa HOM05D006191 ORTHO05D007660 2.2e-11 72.4 64 71.9
Cfa010050 Carpinus fangiana HOM05D000477 ORTHO05D000338 2.2e-11 72.4 61 75.4
FAN25G1591 Fragaria x ananassa HOM05D006191 ORTHO05D007660 2.2e-11 72.4 68 67.6
MCO15G227 Micromonas commoda HOM05D006191 ORTHO05D007660 2.2e-11 72.4 60 70.0
ClCG02G022950 Citrullus lanatus HOM05D006191 ORTHO05D007660 2.9e-11 72.0 42 78.6
Gohir.A13G004900 Gossypium hirsutum HOM05D006191 ORTHO05D007660 3.8e-11 71.6 57 80.7
Haze_23211 Corylus avellana HOM05D000001 ORTHO05D000003 4.9e-11 71.2 42 76.2
VMungo1080G0693 Vigna mungo HOM05D006191 ORTHO05D007660 6.5e-11 70.9 113 51.3
AUR62037186 Chenopodium quinoa HOM05D006191 ORTHO05D007660 8.4e-11 70.5 42 73.8
Pp3c15_6032 Physcomitrium patens HOM05D006191 ORTHO05D007660 2.5e-10 68.9 68 58.8
Aqoxy2G00346 Aquilegia oxysepala HOM05D006191 ORTHO05D007660 7.1e-10 67.4 64 56.2
Cre01.g010500 Chlamydomonas reinhardtii HOM05D006191 ORTHO05D007660 1.3e-08 63.2 42 64.3
PRCOL_00002293 Prasinoderma coloniale HOM05D006191 ORTHO05D007660 1.5e-07 59.7 65 47.7
TAR633G2362 Trochodendron aralioides HOM05D006191 ORTHO05D007660 5.7e-07 57.8 47 83.0


User provided reference genes

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