Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 2.8e-139 498.8 287 100.0
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 8.6e-125 450.7 287 88.5
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 1.5e-124 449.9 288 89.2
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 4.4e-121 438.3 287 87.1
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 5.6e-116 421.4 287 84.3
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 7.3e-116 421.0 287 83.3
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 9.5e-116 420.6 287 84.0
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 1.6e-115 419.9 287 83.3
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 1.6e-115 419.9 287 84.3
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 6.2e-115 417.9 287 82.6
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 1.8e-114 416.4 297 80.1
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 6.8e-114 414.5 287 79.8
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 8.3e-112 407.5 287 82.2
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 5.4e-111 404.8 287 79.8
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 9.2e-111 404.1 287 79.8
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 9.2e-111 404.1 287 79.8
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 2.1e-110 402.9 231 81.0
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 7.8e-110 401.0 287 78.0
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 2.3e-109 399.4 287 80.5
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 3.0e-109 399.1 287 77.7
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 5.1e-109 398.3 287 77.0
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 5.1e-109 398.3 287 78.0
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 6.6e-109 397.9 287 80.1
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 1.1e-108 397.1 287 77.4
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.1e-108 397.1 287 77.4
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 1.1e-108 397.1 287 78.0
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 2.5e-108 396.0 287 77.4
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 3.3e-108 395.6 287 78.7
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 4.3e-108 395.2 287 77.0
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 9.5e-108 394.0 287 77.7
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 1.2e-107 393.7 287 77.0
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.2e-107 393.7 287 76.0
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.2e-107 393.7 287 76.7
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.2e-107 393.7 287 77.0
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 1.6e-107 393.3 231 81.4
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 2.8e-107 392.5 287 77.0
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 2.8e-107 392.5 288 81.2
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.2e-107 391.3 289 76.8
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 4.0e-106 388.7 287 78.7
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 8.9e-106 387.5 289 77.9
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 1.2e-105 387.1 252 74.6
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 4.9e-104 381.7 288 77.4
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 1.1e-103 380.6 231 78.8
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 3.2e-103 379.0 287 76.7
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 1.0e-101 374.0 287 75.6
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.3e-101 373.6 288 75.0
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 6.6e-101 371.3 231 75.3
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.5e-100 369.4 288 74.3
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 5.6e-100 368.2 231 76.6
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 7.3e-100 367.9 290 74.8
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 9.6e-100 367.5 231 76.2
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 2.8e-99 365.9 231 74.9
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.8e-99 365.9 231 74.9
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 3.6e-99 365.5 229 75.5
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 4.7e-99 365.2 287 74.6
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 1.1e-98 364.0 231 74.0
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 1.1e-98 364.0 230 76.1
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 1.8e-98 363.2 287 72.8
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 2.4e-98 362.8 213 80.3
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 6.9e-98 361.3 231 74.9
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 2.0e-97 359.8 287 74.2
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 3.4e-97 359.0 287 74.2
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 5.8e-97 358.2 290 72.1
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 1.3e-96 357.1 287 73.2
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 1.3e-96 357.1 285 74.4
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 2.9e-96 355.9 290 71.7
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 4.9e-96 355.1 289 70.9
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 8.4e-96 354.4 227 74.9
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 1.4e-95 353.6 231 72.3
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 3.2e-95 352.4 287 73.9
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 1.6e-94 350.1 289 70.2
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 1.3e-93 347.1 237 71.7
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 1.7e-93 346.7 230 71.3
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 3.9e-93 345.5 237 71.3
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 6.6e-93 344.7 212 77.8
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.5e-92 343.6 231 71.9
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.5e-92 343.6 288 67.7
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 1.9e-92 343.2 289 71.3
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 2.5e-92 342.8 231 70.1
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 4.3e-92 342.0 230 70.4
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 5.6e-92 341.7 232 70.3
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 9.6e-92 340.9 231 71.0
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 2.8e-91 339.3 230 70.4
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 3.6e-91 339.0 233 70.8
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 6.2e-91 338.2 290 68.3
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 6.2e-91 338.2 229 69.4
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 5.3e-90 335.1 228 70.2
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.4e-89 332.4 266 63.5
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 4.5e-89 332.0 231 67.5
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 4.5e-89 332.0 253 66.4
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 4.5e-89 332.0 287 60.6
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 9.9e-89 330.9 288 67.4
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 8.4e-88 327.8 212 72.2
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 8.4e-88 327.8 230 69.6
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 5.4e-87 325.1 231 67.1
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 1.6e-86 323.6 232 67.7
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 1.6e-86 323.6 287 67.2
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 2.7e-86 322.8 233 67.8
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 6.7e-85 318.2 287 67.2
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 4.3e-84 315.5 214 70.6
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 6.2e-83 311.6 213 68.1
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 6.2e-83 311.6 229 68.6
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 6.2e-83 311.6 231 66.2
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 6.9e-82 308.1 232 65.9
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 4.5e-81 305.4 232 65.5
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 2.9e-80 302.8 287 67.2
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 2.5e-79 299.7 232 65.1
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 3.2e-79 299.3 230 65.2
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.6e-78 297.0 244 74.2
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 4.6e-78 295.4 231 64.1
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 1.8e-77 293.5 233 63.1
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 8.7e-77 291.2 241 63.9
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 1.1e-76 290.8 229 65.5
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 2.5e-76 289.7 234 62.8
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 2.5e-76 289.7 287 65.2
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 7.4e-76 288.1 233 62.2
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 2.1e-75 286.6 230 62.6
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 4.8e-75 285.4 231 62.8
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 9.0e-74 281.2 232 73.7
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 3.4e-73 279.3 234 62.8
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 6.5e-72 275.0 232 59.9
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 3.5e-70 269.2 189 69.8
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 3.0e-69 266.2 226 60.2
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 4.3e-68 262.3 231 69.3
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 9.7e-68 261.2 188 63.8
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 1.8e-66 256.9 210 60.0
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.2e-65 254.2 231 69.7
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 9.4e-63 244.6 233 54.5
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 2.5e-60 236.5 233 54.5
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 5.7e-60 235.3 188 60.6
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 2.8e-59 233.0 234 53.0
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 1.1e-42 177.9 203 46.3
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 8.0e-38 161.8 250 41.2
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 8.0e-38 161.8 247 53.4
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 3.0e-37 159.8 132 60.6
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.6e-33 147.5 242 39.3
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 2.0e-33 147.1 247 40.5
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 1.0e-29 134.8 240 35.4
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 1.2e-28 131.3 231 38.1
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 7.5e-28 128.6 230 37.8
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 2.8e-27 126.7 188 43.1
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 3.7e-27 126.3 228 38.2
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 1.1e-26 124.8 231 39.0
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.8e-26 124.0 225 37.3
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 2.4e-26 123.6 237 38.0
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 2.4e-26 123.6 232 37.9
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 3.1e-26 123.2 232 35.8
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.6e-25 120.9 225 36.4
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 1.6e-25 120.9 233 38.2
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 2.0e-25 120.6 243 35.8
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 2.0e-25 120.6 230 37.0
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 7.7e-25 118.6 234 38.0
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.1e-23 114.8 251 34.3
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 3.3e-23 113.2 216 36.1
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 7.2e-23 112.1 235 36.2
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 4.7e-22 109.4 53 92.5
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 5.7e-20 102.4 242 33.9
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 4.9e-19 99.4 269 32.3
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 2.7e-17 93.6 199 34.2
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 1.3e-16 91.3 56 73.2
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 3.9e-16 89.7 189 32.8
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 3.9e-16 89.7 156 39.7
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 5.0e-16 89.4 171 39.2
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 9.5e-15 85.1 39 92.3
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 4.7e-14 82.8 163 36.8
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 1.4e-13 81.3 249 29.3
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 5.2e-13 79.3 43 76.7
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 5.2e-13 79.3 250 26.0
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 8.9e-13 78.6 103 43.7
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 1.4e-10 71.2 171 33.3
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 3.5e-09 66.6 140 32.9
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 4.6e-09 66.2 51 52.9
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 6.0e-09 65.9 51 54.9
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 5.0e-08 62.8 148 32.4
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.1e-07 61.6 30 76.7
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 2.8e-06 57.0 165 28.5


User provided reference genes

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