Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 4.8e-104 381.3 213 100.0
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 8.8e-58 227.6 214 71.0
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 2.0e-57 226.5 211 64.0
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 9.4e-52 207.6 210 61.0
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 1.2e-43 180.6 202 55.4
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 6.3e-40 168.3 212 52.8
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 1.6e-35 153.7 202 50.5
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 6.1e-35 151.8 202 51.5
Glyma.11G251800 Glycine max HOM05D006962 ORTHO05D008696 2.3e-29 133.3 162 51.9
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 1.5e-28 130.6 215 42.3
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 2.5e-28 129.8 215 40.9
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 6.4e-24 115.2 181 42.5
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 8.3e-24 114.8 217 39.2
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 1.1e-23 114.4 167 40.1
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 3.2e-23 112.8 214 38.8
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 7.0e-23 111.7 213 37.6
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 1.0e-21 107.8 218 41.7
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 6.6e-21 105.1 217 35.5
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 6.6e-21 105.1 195 36.4
Glyma.01G130700 Glycine max HOM05D006962 ORTHO05D008696 8.6e-21 104.8 122 54.1
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 3.3e-20 102.8 176 39.8
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 7.3e-20 101.7 183 40.4
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 9.5e-20 101.3 217 37.8
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 2.8e-19 99.8 156 42.3
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 1.0e-18 97.8 161 48.4
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 1.0e-18 97.8 224 34.8
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 1.0e-18 97.8 207 35.3
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 1.8e-18 97.1 162 42.6
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 2.3e-18 96.7 216 34.7
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 3.1e-18 96.3 216 35.6
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 5.2e-18 95.5 110 46.4
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 5.2e-18 95.5 110 46.4
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 6.8e-18 95.1 216 33.8
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 6.8e-18 95.1 214 35.0
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 8.9e-18 94.7 160 43.8
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 1.2e-17 94.4 215 33.5
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 1.5e-17 94.0 213 31.9
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 2.0e-17 93.6 205 36.1
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 2.6e-17 93.2 164 40.9
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 2.6e-17 93.2 213 33.8
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 2.6e-17 93.2 217 35.9
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 7.5e-17 91.7 171 39.2
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 9.8e-17 91.3 214 34.6
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 9.8e-17 91.3 143 39.9
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 1.7e-16 90.5 222 34.2
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 2.2e-16 90.1 91 53.8
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 2.2e-16 90.1 165 38.2
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 2.2e-16 90.1 144 41.0
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 2.9e-16 89.7 213 33.3
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 3.7e-16 89.4 211 34.1
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 4.9e-16 89.0 212 34.4
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 4.9e-16 89.0 113 40.7
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 4.9e-16 89.0 171 36.8
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 8.3e-16 88.2 194 36.1
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 8.3e-16 88.2 172 34.3
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 1.4e-15 87.4 105 41.9
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 1.4e-15 87.4 169 37.3
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 1.4e-15 87.4 215 35.3
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 1.9e-15 87.0 162 37.7
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 9.2e-15 84.7 150 34.0
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 1.2e-14 84.3 209 31.6
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 2.0e-14 83.6 205 31.2
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 2.0e-14 83.6 176 36.4
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 2.7e-14 83.2 106 43.4
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 3.5e-14 82.8 161 34.8
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 3.5e-14 82.8 107 42.1
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 3.5e-14 82.8 212 31.1
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 6.0e-14 82.0 119 42.9
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 6.0e-14 82.0 213 33.8
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 1.3e-13 80.9 179 38.0
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 1.7e-13 80.5 166 36.7
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 2.3e-13 80.1 155 37.4
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 2.3e-13 80.1 171 36.8
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 3.0e-13 79.7 172 36.0
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 3.9e-13 79.3 205 29.8
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 3.9e-13 79.3 205 29.8
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 5.0e-13 79.0 201 31.8
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 8.6e-13 78.2 208 31.7
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 8.6e-13 78.2 208 31.7
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 1.1e-12 77.8 161 36.0
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 1.5e-12 77.4 151 37.1
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 1.9e-12 77.0 120 44.2
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 4.3e-12 75.9 125 36.8
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 5.6e-12 75.5 205 29.3
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 7.3e-12 75.1 203 32.0
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 7.3e-12 75.1 164 34.1
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 9.5e-12 74.7 119 42.9
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 1.2e-11 74.3 215 30.7
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 1.6e-11 73.9 205 28.8
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.6e-11 73.9 62 51.6
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 1.6e-11 73.9 102 42.2
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 2.1e-11 73.6 107 40.2
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 2.8e-11 73.2 205 30.2
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 3.6e-11 72.8 205 28.3
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 3.6e-11 72.8 165 35.8
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 6.2e-11 72.0 98 37.8
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 2.3e-10 70.1 62 51.6
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 4.0e-10 69.3 95 36.8
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 5.2e-10 68.9 208 29.8
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 6.8e-10 68.6 205 28.3
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 6.8e-10 68.6 165 33.3
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 6.8e-10 68.6 194 28.4
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 1.2e-09 67.8 167 33.5
Zm00001eb241800 Zea mays HOM05D006962 ORTHO05D008696 1.2e-09 67.8 206 28.6
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 1.5e-09 67.4 95 35.8
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 3.4e-09 66.2 194 27.8
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 5.8e-09 65.5 194 27.3
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 1.3e-08 64.3 206 25.7
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 1.7e-08 63.9 90 35.6
Os02g0509600 Oryza sativa ssp. japonica HOM05D006962 ORTHO05D008696 3.7e-08 62.8 131 32.1
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 5.4e-07 58.9 205 27.8


User provided reference genes

Program Settings