Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 4.7e-153 544.7 307 100.0
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 4.1e-109 398.7 331 68.0
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 4.0e-96 355.5 347 62.8
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 1.3e-89 334.0 344 59.6
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 5.3e-88 328.6 316 60.4
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 9.9e-87 324.3 343 57.4
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 5.5e-85 318.5 345 56.8
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 1.2e-84 317.4 314 60.5
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 1.3e-83 313.9 314 60.2
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 1.8e-83 313.5 335 61.5
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 8.7e-83 311.2 324 58.3
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 7.4e-82 308.1 335 55.8
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 3.7e-81 305.8 326 57.4
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 1.8e-80 303.5 354 53.4
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 1.5e-79 300.4 354 53.7
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 2.0e-79 300.1 323 57.0
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 1.3e-78 297.4 314 55.7
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 2.2e-78 296.6 340 54.7
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 2.9e-78 296.2 329 55.6
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 1.4e-77 293.9 350 54.3
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 3.2e-77 292.7 335 57.6
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 4.2e-77 292.4 323 54.8
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 7.9e-76 288.1 326 54.9
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 1.0e-75 287.7 331 54.1
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 2.3e-75 286.6 356 51.1
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 3.9e-75 285.8 332 56.6
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.1e-74 284.3 335 56.4
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 1.5e-74 283.9 328 54.3
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 1.9e-74 283.5 265 64.2
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 4.3e-74 282.3 332 56.0
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 4.3e-74 282.3 332 56.0
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 7.4e-74 281.6 329 53.8
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 9.6e-74 281.2 326 53.1
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 1.3e-73 280.8 338 52.7
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 1.6e-73 280.4 328 54.0
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 4.8e-73 278.9 326 53.1
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 6.3e-73 278.5 326 53.7
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 1.1e-72 277.7 351 50.4
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 1.1e-72 277.7 259 60.6
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 1.4e-72 277.3 329 51.7
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 1.4e-72 277.3 329 51.7
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 2.4e-72 276.6 364 50.8
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 4.1e-72 275.8 350 52.0
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 4.1e-72 275.8 325 52.0
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 5.3e-72 275.4 325 52.0
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 5.3e-72 275.4 325 52.0
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 9.0e-72 274.6 323 52.6
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 1.2e-71 274.2 403 45.9
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 3.4e-71 272.7 328 51.5
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 3.4e-71 272.7 283 57.6
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 7.6e-71 271.6 281 56.9
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 1.3e-70 270.8 361 49.0
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 1.7e-70 270.4 249 61.0
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 2.9e-70 269.6 356 49.4
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 5.0e-70 268.9 354 50.0
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 6.5e-70 268.5 321 53.3
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 8.5e-70 268.1 222 65.8
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 8.5e-70 268.1 380 47.9
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 8.5e-70 268.1 356 48.3
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 3.2e-69 266.2 350 51.1
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 3.2e-69 266.2 355 48.5
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 3.2e-69 266.2 350 48.6
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 5.5e-69 265.4 354 47.5
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 7.2e-69 265.0 353 49.6
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 9.3e-69 264.6 162 82.1
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 1.2e-68 264.2 325 50.5
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 1.6e-68 263.8 351 49.0
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 2.1e-68 263.5 349 47.9
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 6.1e-68 261.9 252 60.3
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 1.3e-67 260.8 323 50.5
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 1.3e-67 260.8 330 50.3
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 1.3e-67 260.8 332 49.7
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 1.3e-67 260.8 352 48.0
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 1.8e-67 260.4 325 50.2
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 1.8e-67 260.4 324 50.9
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 5.1e-67 258.8 272 54.8
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 5.1e-67 258.8 353 49.6
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 7.4e-66 255.0 328 47.9
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 9.7e-66 254.6 328 50.0
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 2.2e-65 253.4 269 56.9
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 2.2e-65 253.4 164 77.4
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 6.3e-65 251.9 349 46.1
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 1.1e-64 251.1 355 46.2
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 1.4e-64 250.8 163 77.9
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 1.8e-64 250.4 165 76.4
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 5.3e-64 248.8 269 56.9
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 9.1e-64 248.1 348 47.7
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 1.5e-63 247.3 235 60.4
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 1.5e-63 247.3 254 57.1
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 7.7e-63 245.0 163 74.8
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 6.5e-62 241.9 217 61.3
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 1.4e-61 240.7 223 61.4
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 4.6e-60 235.7 329 47.4
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 7.4e-58 228.4 329 46.8
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 9.7e-58 228.0 230 55.2
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 1.8e-56 223.8 290 52.1
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 2.6e-55 219.9 283 51.2
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 5.9e-55 218.8 186 62.9
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 6.5e-54 215.3 274 48.2
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 7.2e-53 211.8 286 49.0
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 2.1e-52 210.3 226 52.7
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 6.1e-52 208.8 427 38.4
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 1.8e-51 207.2 238 52.9
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 1.1e-50 204.5 163 68.1
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 4.4e-50 202.6 120 82.5
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 1.8e-43 180.6 158 55.7
Mapoly0037s0067 Marchantia polymorpha HOM05D006540 ORTHO05D008202 2.0e-42 177.2 154 59.1
SEGI_37038 Sequoiadendron giganteum HOM05D006540 ORTHO05D008202 4.8e-41 172.6 143 55.9
SMO347G0417 Selaginella moellendorffii HOM05D006540 ORTHO05D008202 1.4e-40 171.0 222 44.1
Pp3c27_6670 Physcomitrium patens HOM05D006540 ORTHO05D008202 9.4e-37 158.3 156 50.0
Cre12.g528050 Chlamydomonas reinhardtii HOM05D006540 ORTHO05D008202 1.4e-24 117.9 146 43.2
MCO07G599 Micromonas commoda HOM05D006540 ORTHO05D008202 4.9e-17 92.8 130 39.2
RcHm_v2.0_Chr5g0067811 Rosa chinensis HOM05D006540 ORTHO05D008202 3.2e-16 90.1 49 87.8
CBR_g8379 Chara braunii HOM05D006540 ORTHO05D008202 5.4e-16 89.4 87 50.6
PRCOL_00004949 Prasinoderma coloniale HOM05D006540 ORTHO05D008202 1.1e-13 81.6 186 33.3
QL04p066147 Quercus lobata HOM05D006540 ORTHO05D008202 1.4e-11 74.7 43 83.7
BcaC06g33898 Brassica carinata HOM05D006540 ORTHO05D008202 1.6e-07 61.2 56 57.1
unitig_744.g24293 Utricularia gibba HOM05D006540 ORTHO05D008202 1.6e-07 61.2 44 59.1
Pp3c6_29630 Physcomitrium patens HOM05D006540 ORTHO05D008202 2.3e-06 57.4 71 40.8


User provided reference genes

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