Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17732 Trifolium pratense HOM05D005578 ORTHO05D006969 9.4e-40 166.4 83 100.0
TPR.G12104 Trifolium pratense HOM05D005578 ORTHO05D006969 2.6e-34 148.3 82 89.0
Psat6g034120 Pisum sativum HOM05D005578 ORTHO05D006969 4.2e-32 141.0 82 84.1
Medtr1g008370 Medicago truncatula HOM05D005578 ORTHO05D006969 5.1e-30 134.0 79 82.3
Ca_12803_v3 Cicer arietinum L. HOM05D005578 ORTHO05D006969 1.7e-28 129.0 82 78.0
Ca_12815_v3 Cicer arietinum L. HOM05D005578 ORTHO05D006969 1.7e-28 129.0 82 78.0
Lalb_Chr10g0096771 Lupinus albus HOM05D005578 ORTHO05D006969 1.4e-27 125.9 80 73.8
Glyma.15G008200 Glycine max HOM05D005578 ORTHO05D006969 2.5e-24 115.2 83 68.7
VMungo1080G0492 Vigna mungo HOM05D005578 ORTHO05D006969 5.5e-24 114.0 80 70.0
Lj2g0024445 Lotus japonicus HOM05D005578 ORTHO05D006969 2.1e-23 112.1 81 65.4
Phvul.005G177500 Phaseolus vulgaris HOM05D005578 ORTHO05D006969 1.0e-22 109.8 79 67.1
arahy.Tifrunner.gnm1.ann1.22GNET Arachis hypogaea HOM05D005578 ORTHO05D006969 1.8e-22 109.0 82 67.1
arahy.Tifrunner.gnm1.ann1.SET2JR Arachis hypogaea HOM05D005578 ORTHO05D006969 1.8e-22 109.0 82 67.1
Lj1g0014139 Lotus japonicus HOM05D005578 ORTHO05D006969 1.8e-22 109.0 81 63.0
Glyma.13G365067 Glycine max HOM05D005578 ORTHO05D006969 9.7e-21 103.2 82 61.0
Prupe.1G080200 Prunus persica HOM05D005578 ORTHO05D006969 4.2e-16 87.8 76 56.6
ClCG07G015240 Citrullus lanatus HOM05D005578 ORTHO05D006969 1.2e-15 86.3 80 53.8
QL10p053362 Quercus lobata HOM05D005578 ORTHO05D006969 1.6e-15 85.9 75 56.0
QL10p054496 Quercus lobata HOM05D005578 ORTHO05D006969 1.6e-15 85.9 75 56.0
CsaV3_4G002830 Cucumis sativus L. HOM05D005578 ORTHO05D006969 2.1e-15 85.5 80 53.8
Manes.04G036900 Manihot esculenta HOM05D005578 ORTHO05D006969 4.7e-15 84.3 79 55.7
CANSAT35G1372 Cannabis sativa HOM05D005578 ORTHO05D006969 6.1e-15 84.0 79 53.2
CiPaw.02G101100 Carya illinoinensis HOM05D005578 ORTHO05D006969 6.1e-15 84.0 75 54.7
MD04G1048400 Malus domestica HOM05D005578 ORTHO05D006969 6.1e-15 84.0 74 56.8
CANSAT78G2511 Cannabis sativa HOM05D005578 ORTHO05D006969 1.4e-14 82.8 79 55.7
COL.COLO4_38536 Corchorus olitorius HOM05D005578 ORTHO05D006969 5.2e-14 80.9 81 53.1
Dinv33195 Davidia involucrata HOM05D005578 ORTHO05D006969 6.8e-14 80.5 83 54.2
Hma1.2p1_0150F.1_g066660 Hydrangea macrophylla HOM05D005578 ORTHO05D006969 1.2e-13 79.7 79 53.2
Hma1.2p1_0150F.1_g066670 Hydrangea macrophylla HOM05D005578 ORTHO05D006969 1.2e-13 79.7 79 53.2
FAN22G0827 Fragaria x ananassa HOM05D005578 ORTHO05D006969 3.4e-13 78.2 72 55.6
FAN07G2607 Fragaria x ananassa HOM05D005578 ORTHO05D006969 4.4e-13 77.8 74 52.7
FAN12G1674 Fragaria x ananassa HOM05D005578 ORTHO05D006969 4.4e-13 77.8 74 52.7
FAN12G2406 Fragaria x ananassa HOM05D005578 ORTHO05D006969 4.4e-13 77.8 74 52.7
Ciclev10020255m.g Citrus clementina HOM05D005578 ORTHO05D006969 1.3e-12 76.3 81 49.4
Atru.chr4.1387 Acer truncatum HOM05D005578 ORTHO05D006969 2.8e-12 75.1 76 52.6
Eucgr.A00019 Eucalyptus grandis HOM05D005578 ORTHO05D006969 2.8e-12 75.1 75 50.7
RcHm_v2.0_Chr4g0406211 Rosa chinensis HOM05D005578 ORTHO05D006969 2.8e-12 75.1 78 52.6
Sabra06G0097900 Salix brachista HOM05D005578 ORTHO05D006969 2.8e-12 75.1 82 46.3
Duzib084G0701 Durio zibethinus HOM05D005578 ORTHO05D006969 6.3e-12 73.9 69 53.6
Gohir.D09G171900 Gossypium hirsutum HOM05D005578 ORTHO05D006969 8.3e-12 73.6 70 51.4
Thecc.03G041600 Theobroma cacao HOM05D005578 ORTHO05D006969 8.3e-12 73.6 81 49.4
Gorai.006G193800 Gossypium raimondii HOM05D005578 ORTHO05D006969 1.1e-11 73.2 70 51.4
Hund00394 Selenicereus undatus HOM05D005578 ORTHO05D006969 1.1e-11 73.2 77 48.1
Actinidia27108 Actinidia chinensis HOM05D005578 ORTHO05D006969 1.8e-11 72.4 80 48.8
PGR083G2150 Punica granatum HOM05D005578 ORTHO05D006969 1.8e-11 72.4 82 46.3
AUR62027084 Chenopodium quinoa HOM05D005578 ORTHO05D006969 3.1e-11 71.6 82 47.6
GSVIVG01038127001 Vitis vinifera HOM05D005578 ORTHO05D006969 3.1e-11 71.6 73 53.4
CSS0000228 Camellia sinensis var. sinensis HOM05D005578 ORTHO05D006969 7.0e-11 70.5 81 46.9
CSS0022855 Camellia sinensis var. sinensis HOM05D005578 ORTHO05D006969 7.0e-11 70.5 78 47.4
CSS0036062 Camellia sinensis var. sinensis HOM05D005578 ORTHO05D006969 7.0e-11 70.5 81 46.9
CAN.G128.150 Capsicum annuum HOM05D005578 ORTHO05D006969 9.1e-11 70.1 69 49.3
Gohir.A09G176200 Gossypium hirsutum HOM05D005578 ORTHO05D006969 1.2e-10 69.7 70 48.6
CSS0020752 Camellia sinensis var. sinensis HOM05D005578 ORTHO05D006969 1.6e-10 69.3 81 45.7
Cc00_g24800 Coffea canephora HOM05D005578 ORTHO05D006969 1.6e-10 69.3 79 48.1
Lj3A157G51 Lonicera japonica HOM05D005578 ORTHO05D006969 1.6e-10 69.3 81 48.1
PSO478G3531 Papaver somniferum HOM05D005578 ORTHO05D006969 1.6e-10 69.3 76 48.7
AUR62030923 Chenopodium quinoa HOM05D005578 ORTHO05D006969 2.7e-10 68.6 79 46.8
TWI63G0500 Tripterygium wilfordii HOM05D005578 ORTHO05D006969 2.7e-10 68.6 79 46.8
Cpa.g.sc9.352 Carica papaya HOM05D005578 ORTHO05D006969 3.5e-10 68.2 76 47.4
ECA232G2403 Erigeron canadensis HOM05D005578 ORTHO05D006969 4.5e-10 67.8 80 45.0
TAR365G0588 Trochodendron aralioides HOM05D005578 ORTHO05D006969 4.5e-10 67.8 79 49.4
Migut.N01914 Erythranthe guttata HOM05D005578 ORTHO05D006969 5.9e-10 67.4 84 46.4
Nitab4.5_0000387g0110 Nicotiana tabacum HOM05D005578 ORTHO05D006969 1.3e-09 66.2 81 44.4
MSTRG.28018 Avicennia marina HOM05D005578 ORTHO05D006969 2.2e-09 65.5 76 48.7
CDE08G0459 Ceratophyllum demersum HOM05D005578 ORTHO05D006969 2.2e-09 65.5 78 43.6
Cc03_g13760 Coffea canephora HOM05D005578 ORTHO05D006969 2.2e-09 65.5 79 46.8
SEGI_35608 Sequoiadendron giganteum HOM05D005578 ORTHO05D006969 2.2e-09 65.5 80 47.5
Ah.01g024150 Amaranthus hybridus HOM05D005578 ORTHO05D006969 2.9e-09 65.1 79 48.1
Potri.006G123700 Populus trichocarpa HOM05D005578 ORTHO05D006969 6.5e-09 63.9 82 40.2
Sopen10g032050 Solanum pennellii HOM05D005578 ORTHO05D006969 6.5e-09 63.9 80 45.0
PGSC0003DMG400028219 Solanum tuberosum HOM05D005578 ORTHO05D006969 6.5e-09 63.9 80 45.0
Nn3g18569 Nelumbo nucifera HOM05D005578 ORTHO05D006969 8.5e-09 63.5 82 41.5
PSO017G0139 Papaver somniferum HOM05D005578 ORTHO05D006969 8.5e-09 63.5 76 47.4
Sc18g0007160 Simmondsia chinensis HOM05D005578 ORTHO05D006969 8.5e-09 63.5 78 46.2
Solyc10g081540.2 Solanum lycopersicum HOM05D005578 ORTHO05D006969 8.5e-09 63.5 80 45.0
vmacro00704 Vaccinium macrocarpon HOM05D005578 ORTHO05D006969 1.1e-08 63.2 83 45.8
BcaC07g40470 Brassica carinata HOM05D005578 ORTHO05D006969 1.5e-08 62.8 80 46.2
Peaxi162Scf00568g00519 Petunia axillaris HOM05D005578 ORTHO05D006969 1.5e-08 62.8 77 46.8
THA.LOC104802321 Tarenaya hassleriana HOM05D005578 ORTHO05D006969 1.9e-08 62.4 76 44.7
A09p51890 Brassica napus HOM05D005578 ORTHO05D006969 4.2e-08 61.2 77 45.5
BraA09t40625Z Brassica rapa HOM05D005578 ORTHO05D006969 4.2e-08 61.2 77 45.5
Haze_01375 Corylus avellana HOM05D005578 ORTHO05D006969 4.2e-08 61.2 72 44.4
PSO675G5381 Papaver somniferum HOM05D005578 ORTHO05D006969 4.2e-08 61.2 76 46.1
EL10Ac9g22122 Beta vulgaris HOM05D005578 ORTHO05D006969 7.2e-08 60.5 82 43.9
HanXRQChr02g0059791 Helianthus annuus HOM05D005578 ORTHO05D006969 7.2e-08 60.5 81 39.5
HPP92_007603 Vanilla planifolia HOM05D005578 ORTHO05D006969 9.4e-08 60.1 72 47.2
BcaC07g40493 Brassica carinata HOM05D005578 ORTHO05D006969 1.2e-07 59.7 79 40.5
C08p34620 Brassica napus HOM05D005578 ORTHO05D006969 1.2e-07 59.7 79 40.5
BolC8t51064H Brassica oleracea HOM05D005578 ORTHO05D006969 1.2e-07 59.7 79 40.5
SGA_v2.0_scaffold81G26092 Striga asiatica HOM05D005578 ORTHO05D006969 1.2e-07 59.7 77 45.5
SalBow4G1988 Salvia bowleyana HOM05D005578 ORTHO05D006969 1.6e-07 59.3 79 38.0
AL5G41540 Arabidopsis lyrata HOM05D005578 ORTHO05D006969 2.1e-07 58.9 74 43.2
AT3G59630 Arabidopsis thaliana HOM05D005578 ORTHO05D006969 2.1e-07 58.9 74 43.2
Thhalv10028620m.g Eutrema salsugineum HOM05D005578 ORTHO05D006969 2.7e-07 58.5 79 41.8
Aqoxy5G03977 Aquilegia oxysepala HOM05D005578 ORTHO05D006969 3.6e-07 58.2 76 39.5
Sp5g03550 Schrenkiella parvula HOM05D005578 ORTHO05D006969 3.6e-07 58.2 79 44.3
AL5G41640 Arabidopsis lyrata HOM05D005578 ORTHO05D006969 6.1e-07 57.4 74 41.9
Phvul.L003146 Phaseolus vulgaris HOM05D005578 ORTHO05D006969 6.1e-07 57.4 63 49.2
SalBow4G1580 Salvia bowleyana HOM05D005578 ORTHO05D006969 6.1e-07 57.4 79 36.7
CARHR220950 Cardamine hirsuta HOM05D005578 ORTHO05D006969 1.0e-06 56.6 67 40.3
MBI08_g25556_MAGBIO Magnolia biondii HOM05D005578 ORTHO05D006969 1.8e-06 55.8 76 43.4
Rhsim09G0010700 Rhododendron simsii HOM05D005578 ORTHO05D006969 1.8e-06 55.8 72 47.2
Carub.0005s2633 Capsella rubella HOM05D005578 ORTHO05D006969 2.3e-06 55.5 74 40.5
Aa31LG10G13930 Aethionema arabicum HOM05D005578 ORTHO05D006969 4.0e-06 54.7 79 41.8


User provided reference genes

Program Settings