Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 1.6e-153 546.2 308 100.0
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 2.6e-95 352.8 245 82.9
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 1.2e-92 344.0 272 76.1
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.3e-89 334.0 273 74.4
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.3e-89 334.0 273 74.4
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 1.2e-76 290.8 242 68.2
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 1.8e-75 287.0 288 61.8
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 3.9e-75 285.8 244 67.6
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 4.3e-74 282.3 299 61.5
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 4.1e-72 275.8 264 62.5
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 5.3e-72 275.4 229 68.1
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 4.5e-71 272.3 229 67.2
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 4.1e-64 249.2 276 56.2
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 1.2e-63 247.7 223 63.7
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 1.7e-62 243.8 292 51.7
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 7.2e-61 238.4 271 53.5
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 1.2e-60 237.7 285 53.3
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 2.7e-60 236.5 286 52.1
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 2.7e-60 236.5 274 54.7
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 1.8e-59 233.8 282 53.2
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 2.3e-59 233.4 285 50.9
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 2.3e-59 233.4 257 56.8
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 3.0e-59 233.0 208 61.1
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 3.9e-59 232.6 217 60.8
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 5.2e-59 232.3 191 66.5
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 8.8e-59 231.5 232 58.2
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 1.5e-58 230.7 270 51.9
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 2.0e-58 230.3 227 59.5
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 3.3e-58 229.6 270 52.6
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 4.4e-58 229.2 273 53.1
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 1.3e-57 227.6 234 58.1
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 4.8e-57 225.7 273 52.4
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 8.2e-57 224.9 274 52.6
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 9.1e-56 221.5 209 60.3
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.6e-55 220.7 276 52.2
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 2.0e-55 220.3 270 53.7
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 2.0e-55 220.3 216 58.8
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.6e-55 219.9 275 52.4
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 3.5e-55 219.5 214 59.8
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 3.5e-55 219.5 273 51.6
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 7.7e-55 218.4 284 48.6
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 7.7e-55 218.4 215 60.0
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 1.0e-54 218.0 213 57.3
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 1.3e-54 217.6 226 56.2
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 2.2e-54 216.9 224 56.2
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 5.0e-54 215.7 268 52.2
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 5.0e-54 215.7 213 58.7
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 6.5e-54 215.3 222 56.8
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 1.1e-53 214.5 288 51.4
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.5e-53 214.2 218 58.7
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 2.5e-53 213.4 277 49.8
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 3.2e-53 213.0 214 57.0
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 3.2e-53 213.0 210 58.6
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 4.2e-53 212.6 218 58.7
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 5.5e-53 212.2 218 58.7
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 9.4e-53 211.5 222 55.0
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 9.4e-53 211.5 223 55.2
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 9.4e-53 211.5 234 55.1
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.2e-52 211.1 217 57.6
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 2.1e-52 210.3 223 57.0
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 3.6e-52 209.5 277 48.7
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 4.7e-52 209.1 213 57.7
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 6.1e-52 208.8 227 54.2
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 6.1e-52 208.8 206 58.7
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 6.1e-52 208.8 228 54.8
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 8.0e-52 208.4 230 53.5
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 1.4e-51 207.6 223 55.6
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 1.4e-51 207.6 230 53.9
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 1.4e-51 207.6 215 57.2
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 1.8e-51 207.2 299 48.2
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 3.0e-51 206.5 282 50.7
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 3.0e-51 206.5 222 55.4
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 3.0e-51 206.5 222 55.4
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 4.0e-51 206.1 223 55.2
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 4.0e-51 206.1 200 57.5
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 5.2e-51 205.7 222 55.9
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 5.2e-51 205.7 221 56.1
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 8.8e-51 204.9 216 57.9
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 1.5e-50 204.1 213 57.7
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 3.3e-50 203.0 273 47.3
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 2.2e-49 200.3 270 48.1
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 3.7e-49 199.5 228 53.9
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 1.1e-48 198.0 200 59.0
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 1.1e-48 198.0 274 48.2
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 2.4e-48 196.8 203 55.7
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 2.9e-46 189.9 257 49.0
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 2.9e-46 189.9 257 49.0
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 5.5e-45 185.7 227 50.2
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 1.6e-44 184.1 198 56.1
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 2.1e-44 183.7 192 54.7
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 3.0e-43 179.9 284 43.3
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 4.4e-42 176.0 222 48.2
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 1.3e-41 174.5 136 70.6
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.7e-41 174.1 216 50.9
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 6.3e-41 172.2 213 50.2
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 2.4e-40 170.2 199 51.8
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 3.5e-39 166.4 196 52.6
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 2.3e-38 163.7 203 47.8
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 3.3e-37 159.8 155 59.4
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 4.7e-36 156.0 215 48.4
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 6.1e-36 155.6 229 46.3
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 3.0e-35 153.3 195 48.7
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 2.8e-33 146.7 124 66.9
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 3.7e-33 146.4 207 49.3
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 4.9e-33 146.0 201 47.8
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 8.3e-33 145.2 218 46.8
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 1.1e-32 144.8 211 46.0
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 3.1e-32 143.3 139 57.6
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 2.0e-31 140.6 289 39.4
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 2.5e-29 133.7 205 47.3
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 9.5e-29 131.7 194 45.9
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 6.1e-28 129.0 179 44.1
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 1.7e-25 120.9 101 67.3
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 3.7e-25 119.8 133 56.4
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 4.1e-24 116.3 142 50.0
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 2.3e-22 110.5 142 51.4
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 1.1e-21 108.2 134 51.5
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 1.1e-21 108.2 134 51.5
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 4.7e-20 102.8 193 37.3
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 6.2e-20 102.4 127 53.5
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 5.2e-19 99.4 237 35.4
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 8.9e-19 98.6 167 40.7
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 9.8e-18 95.1 73 67.1
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 1.7e-14 84.3 72 66.7
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 4.3e-13 79.7 218 33.9
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 9.5e-13 78.6 232 32.8
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 4.7e-12 76.3 214 32.7
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 1.4e-11 74.7 199 30.7
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 1.1e-08 65.1 56 60.7
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 4.1e-08 63.2 170 30.0
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 1.0e-06 58.5 61 59.0
C01p49410 Brassica napus HOM05D005433 ORTHO05D040690 1.7e-06 57.8 136 34.6


User provided reference genes

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