Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17537 Trifolium pratense HOM05D000955 ORTHO05D001429 2.3e-50 201.8 96 100.0
Medtr1g019640 Medicago truncatula HOM05D000955 ORTHO05D001429 9.2e-39 163.3 96 79.2
Medtr1g019660 Medicago truncatula HOM05D000955 ORTHO05D001429 4.3e-36 154.5 96 76.0
Medtr1g019610 Medicago truncatula HOM05D000955 ORTHO05D001429 1.8e-34 149.1 95 73.7
Medtr1g019670 Medicago truncatula HOM05D000955 ORTHO05D001429 7.0e-31 137.1 94 68.1
TPR.G3750 Trifolium pratense HOM05D000955 ORTHO05D001429 5.0e-29 131.0 96 65.6
Psat6g013480 Pisum sativum HOM05D000955 ORTHO05D001429 1.2e-27 126.3 87 65.5
VMungo0647G0935 Vigna mungo HOM05D000955 ORTHO05D001429 2.5e-20 102.1 73 65.8
Phvul.001G021550 Phaseolus vulgaris HOM05D000955 ORTHO05D001429 1.8e-18 95.9 73 58.9
Phvul.001G021600 Phaseolus vulgaris HOM05D000955 ORTHO05D001429 2.3e-18 95.5 93 50.5
Phvul.001G021700 Phaseolus vulgaris HOM05D000955 ORTHO05D001429 4.0e-18 94.7 99 47.5
Phvul.001G021500 Phaseolus vulgaris HOM05D000955 ORTHO05D001429 1.5e-17 92.8 73 58.9
Glyma.14G082400 Glycine max HOM05D000955 ORTHO05D001429 2.6e-17 92.0 99 45.5
Psat6g013360 Pisum sativum HOM05D000955 ORTHO05D001429 1.7e-16 89.4 89 48.3
VMungo0647G0316 Vigna mungo HOM05D000955 ORTHO05D001429 1.7e-16 89.4 87 47.1
Phvul.001G021750 Phaseolus vulgaris HOM05D000955 ORTHO05D001429 5.4e-15 84.3 91 45.1
Medtr1g019600 Medicago truncatula HOM05D000955 ORTHO05D001429 2.7e-14 82.0 101 43.6
Lalb_Chr14g0368741 Lupinus albus HOM05D000955 ORTHO05D001429 6.0e-14 80.9 70 57.1
Thecc.08G009900 Theobroma cacao HOM05D000955 ORTHO05D001429 1.1e-12 76.6 96 41.7
Gohir.D06G016300 Gossypium hirsutum HOM05D000955 ORTHO05D001429 3.3e-12 75.1 99 39.4
Gorai.010G019200 Gossypium raimondii HOM05D000955 ORTHO05D001429 3.3e-12 75.1 99 39.4
Atru.chr13.673 Acer truncatum HOM05D000955 ORTHO05D001429 5.6e-12 74.3 72 48.6
Manes.18G036100 Manihot esculenta HOM05D000955 ORTHO05D001429 7.3e-12 73.9 92 39.1
Gohir.D02G091700 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.2e-11 73.2 96 42.7
Gorai.005G102800 Gossypium raimondii HOM05D000955 ORTHO05D001429 1.2e-11 73.2 96 42.7
Thecc.08G009100 Theobroma cacao HOM05D000955 ORTHO05D001429 3.6e-11 71.6 70 47.1
CiPaw.16G045300 Carya illinoinensis HOM05D000955 ORTHO05D001429 4.7e-11 71.2 63 52.4
Gorai.010G019300 Gossypium raimondii HOM05D000955 ORTHO05D001429 4.7e-11 71.2 72 43.1
Manes.05G173200 Manihot esculenta HOM05D000955 ORTHO05D001429 4.7e-11 71.2 92 39.1
Atru.chr13.660 Acer truncatum HOM05D000955 ORTHO05D001429 6.2e-11 70.9 92 41.3
Medtr1g019590 Medicago truncatula HOM05D000955 ORTHO05D001429 6.2e-11 70.9 76 50.0
Cfa018533 Carpinus fangiana HOM05D000955 ORTHO05D001429 8.1e-11 70.5 92 38.0
PGSC0003DMG400007984 Solanum tuberosum HOM05D000955 ORTHO05D001429 8.1e-11 70.5 63 50.8
QL02p005168 Quercus lobata HOM05D000955 ORTHO05D001429 1.4e-10 69.7 72 44.4
Dinv35967 Davidia involucrata HOM05D000955 ORTHO05D001429 1.8e-10 69.3 72 41.7
Gohir.D06G016400 Gossypium hirsutum HOM05D000955 ORTHO05D001429 2.4e-10 68.9 73 41.1
Gohir.A06G018101 Gossypium hirsutum HOM05D000955 ORTHO05D001429 3.1e-10 68.6 72 41.7
Solyc04g079080.2 Solanum lycopersicum HOM05D000955 ORTHO05D003340 3.1e-10 68.6 82 43.9
Sopen04g032680 Solanum pennellii HOM05D000955 ORTHO05D001429 3.1e-10 68.6 82 43.9
Sc15g0003450 Simmondsia chinensis HOM05D000955 ORTHO05D001429 4.0e-10 68.2 72 45.8
Glyma.17G242550 Glycine max HOM05D000955 ORTHO05D001429 5.2e-10 67.8 90 40.0
QL02p005158 Quercus lobata HOM05D000955 ORTHO05D001429 5.2e-10 67.8 72 44.4
QL02p005180 Quercus lobata HOM05D000955 ORTHO05D001429 5.2e-10 67.8 72 47.2
Ciclev10002898m.g Citrus clementina HOM05D000955 ORTHO05D001429 8.9e-10 67.0 87 42.5
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 1.5e-09 66.2 81 42.0
CiPaw.15G060300 Carya illinoinensis HOM05D000955 ORTHO05D001429 2.0e-09 65.9 70 47.1
Gohir.D06G016200 Gossypium hirsutum HOM05D000955 ORTHO05D001429 2.0e-09 65.9 99 36.4
Gorai.010G019100 Gossypium raimondii HOM05D000955 ORTHO05D001429 2.0e-09 65.9 99 36.4
Thecc.08G009300 Theobroma cacao HOM05D000955 ORTHO05D001429 2.0e-09 65.9 70 45.7
Atru.chr13.683 Acer truncatum HOM05D000955 ORTHO05D001429 2.6e-09 65.5 65 47.7
QL02p005214 Quercus lobata HOM05D000023 ORTHO05D000014 2.6e-09 65.5 72 45.8
Atru.chr13.682 Acer truncatum HOM05D000955 ORTHO05D001429 3.4e-09 65.1 76 40.8
Gohir.A06G017900 Gossypium hirsutum HOM05D000955 ORTHO05D001429 3.4e-09 65.1 99 35.4
QL02p005175 Quercus lobata HOM05D000955 ORTHO05D001429 3.4e-09 65.1 72 47.2
Cfa018537 Carpinus fangiana HOM05D000955 ORTHO05D001429 4.4e-09 64.7 72 43.1
CiPaw.16G045200 Carya illinoinensis HOM05D000955 ORTHO05D001429 4.4e-09 64.7 70 44.3
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 4.4e-09 64.7 72 43.1
COL.COLO4_26493 Corchorus olitorius HOM05D000955 ORTHO05D001429 4.4e-09 64.7 72 43.1
PGR031G2327 Punica granatum HOM05D000955 ORTHO05D001429 4.4e-09 64.7 83 38.6
Atru.chr13.674 Acer truncatum HOM05D000955 ORTHO05D001429 5.8e-09 64.3 82 37.8
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 5.8e-09 64.3 66 47.0
Gohir.D02G091500 Gossypium hirsutum HOM05D000955 ORTHO05D001429 5.8e-09 64.3 72 41.7
Gorai.005G102600 Gossypium raimondii HOM05D000955 ORTHO05D001429 5.8e-09 64.3 72 41.7
Atru.chr13.684 Acer truncatum HOM05D000955 ORTHO05D001429 7.6e-09 63.9 65 44.6
Cfa018536 Carpinus fangiana HOM05D000955 ORTHO05D001429 7.6e-09 63.9 72 44.4
CiPaw.16G044800 Carya illinoinensis HOM05D000955 ORTHO05D001429 7.6e-09 63.9 76 40.8
Thecc.08G008600 Theobroma cacao HOM05D000955 ORTHO05D001429 7.6e-09 63.9 82 43.9
Thecc.08G008700 Theobroma cacao HOM05D000955 ORTHO05D001429 7.6e-09 63.9 73 38.4
Atru.chr13.681 Acer truncatum HOM05D000955 ORTHO05D001429 9.9e-09 63.5 76 38.2
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 9.9e-09 63.5 72 44.4
Nitab4.5_0001101g0050 Nicotiana tabacum HOM05D000955 ORTHO05D001429 9.9e-09 63.5 61 47.5
COL.COLO4_26489 Corchorus olitorius HOM05D000955 ORTHO05D001429 1.3e-08 63.2 68 41.2
COL.COLO4_26495 Corchorus olitorius HOM05D000955 ORTHO05D001429 1.7e-08 62.8 66 45.5
Gohir.A03G076900 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.7e-08 62.8 66 42.4
Gohir.A06G018300 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.7e-08 62.8 93 36.6
QL02p005235 Quercus lobata HOM05D000955 ORTHO05D001429 1.7e-08 62.8 72 38.9
Atru.chr13.685 Acer truncatum HOM05D000955 ORTHO05D001429 2.2e-08 62.4 82 40.2
Gorai.005G102700 Gossypium raimondii HOM05D000955 ORTHO05D001429 2.2e-08 62.4 66 42.4
QL02p005194 Quercus lobata HOM05D000955 ORTHO05D001429 2.9e-08 62.0 70 44.3
TPR.G3753 Trifolium pratense HOM05D000955 ORTHO05D001429 2.9e-08 62.0 100 37.0
CiPaw.15G060200 Carya illinoinensis HOM05D000955 ORTHO05D001429 4.9e-08 61.2 72 43.1
COL.COLO4_26496 Corchorus olitorius HOM05D000955 ORTHO05D001429 4.9e-08 61.2 68 45.6
Thecc.08G009700 Theobroma cacao HOM05D000955 ORTHO05D001429 4.9e-08 61.2 64 46.9
TWI36G1204 Tripterygium wilfordii HOM05D000955 ORTHO05D001429 4.9e-08 61.2 66 43.9
CiPaw.15G060100 Carya illinoinensis HOM05D000955 ORTHO05D001429 6.4e-08 60.8 72 38.9
Gohir.D02G091600 Gossypium hirsutum HOM05D000955 ORTHO05D001429 6.4e-08 60.8 66 43.9
COL.COLO4_26488 Corchorus olitorius HOM05D000955 ORTHO05D001429 8.4e-08 60.5 96 35.4
COL.COLO4_26490 Corchorus olitorius HOM05D000955 ORTHO05D001429 8.4e-08 60.5 82 37.8
Duzib093G0375 Durio zibethinus HOM05D000955 ORTHO05D001429 8.4e-08 60.5 72 44.4
Gohir.A03G076800 Gossypium hirsutum HOM05D000955 ORTHO05D001429 8.4e-08 60.5 72 38.9
Potri.008G079066 Populus trichocarpa HOM05D000955 ORTHO05D001429 8.4e-08 60.5 81 35.8
Thecc.08G009800 Theobroma cacao HOM05D000955 ORTHO05D001429 8.4e-08 60.5 71 46.5
TWI36G1691 Tripterygium wilfordii HOM05D000955 ORTHO05D001429 8.4e-08 60.5 91 38.5
CiPaw.15G060000 Carya illinoinensis HOM05D000955 ORTHO05D001429 1.1e-07 60.1 66 43.9
Gohir.D06G016500 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.1e-07 60.1 93 36.6
Gorai.010G019400 Gossypium raimondii HOM05D000955 ORTHO05D001429 1.1e-07 60.1 93 36.6
Manes.18G036200 Manihot esculenta HOM05D000955 ORTHO05D001429 1.1e-07 60.1 82 40.2
Atru.chr13.672 Acer truncatum HOM05D000955 ORTHO05D001429 1.4e-07 59.7 72 41.7
Potri.008G079132 Populus trichocarpa HOM05D000955 ORTHO05D001429 1.4e-07 59.7 72 38.9
COL.COLO4_08734 Corchorus olitorius HOM05D000955 ORTHO05D001429 1.9e-07 59.3 83 38.6
Haze_17535 Corylus avellana HOM05D000955 ORTHO05D001429 1.9e-07 59.3 72 41.7
QL02p005131 Quercus lobata HOM05D000955 ORTHO05D001429 1.9e-07 59.3 72 44.4
Atru.chr13.675 Acer truncatum HOM05D000955 ORTHO05D001429 2.4e-07 58.9 90 35.6
CiPaw.15G058900 Carya illinoinensis HOM05D000955 ORTHO05D001429 2.4e-07 58.9 83 39.8
CAN.G371.26 Capsicum annuum HOM05D000955 ORTHO05D001429 3.2e-07 58.5 89 38.2
AUR62014425 Chenopodium quinoa HOM05D000955 ORTHO05D001429 3.2e-07 58.5 72 40.3
Sc26g0000770 Simmondsia chinensis HOM05D000955 ORTHO05D001429 3.2e-07 58.5 72 41.7
Atru.chr13.676 Acer truncatum HOM05D000955 ORTHO05D001429 4.2e-07 58.2 87 37.9
Cfa018534 Carpinus fangiana HOM05D000955 ORTHO05D001429 4.2e-07 58.2 72 41.7
Nitab4.5_0000686g0110 Nicotiana tabacum HOM05D000955 ORTHO05D003340 4.2e-07 58.2 75 41.3
Nitab4.5_0000686g0170 Nicotiana tabacum HOM05D000955 ORTHO05D001429 4.2e-07 58.2 88 37.5
PGSC0003DMG400015414 Solanum tuberosum HOM05D000955 ORTHO05D001429 4.2e-07 58.2 79 39.2
Atru.chr13.677 Acer truncatum HOM05D000955 ORTHO05D001429 5.4e-07 57.8 59 45.8
AUR62019161 Chenopodium quinoa HOM05D000955 ORTHO05D001429 5.4e-07 57.8 72 40.3
AUR62034572 Chenopodium quinoa HOM05D000955 ORTHO05D001429 5.4e-07 57.8 72 40.3
Nitab4.5_0001101g0030 Nicotiana tabacum HOM05D000955 ORTHO05D001429 5.4e-07 57.8 81 34.6
QL11p020910 Quercus lobata HOM05D000955 ORTHO05D001429 5.4e-07 57.8 72 37.5
RcHm_v2.0_Chr6g0307841 Rosa chinensis HOM05D000955 ORTHO05D001429 5.4e-07 57.8 82 39.0
Solyc12g088840.1 Solanum lycopersicum HOM05D000955 ORTHO05D001429 5.4e-07 57.8 79 36.7
Thecc.08G008900 Theobroma cacao HOM05D000955 ORTHO05D001429 5.4e-07 57.8 61 44.3
Actinidia22622 Actinidia chinensis HOM05D000955 ORTHO05D001429 7.1e-07 57.4 93 33.3
Glyma.17G242701 Glycine max HOM05D000955 ORTHO05D001429 9.3e-07 57.0 70 42.9
Nitab4.5_0000686g0100 Nicotiana tabacum HOM05D000955 ORTHO05D001429 9.3e-07 57.0 81 35.8
ClCG08G015840 Citrullus lanatus HOM05D000955 ORTHO05D001429 1.2e-06 56.6 65 41.5
Nitab4.5_0000686g0120 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.2e-06 56.6 72 38.9
QL02p005106 Quercus lobata HOM05D000955 ORTHO05D001429 1.2e-06 56.6 72 37.5
Gorai.009G275500 Gossypium raimondii HOM05D000955 ORTHO05D001429 1.6e-06 56.2 85 37.6
CsaV3_5G015470 Cucumis sativus L. HOM05D000955 ORTHO05D001429 2.1e-06 55.8 64 45.3
Sopen12g030730 Solanum pennellii HOM05D000955 ORTHO05D001429 2.1e-06 55.8 79 36.7
COL.COLO4_26491 Corchorus olitorius HOM05D000955 ORTHO05D001429 2.7e-06 55.5 72 34.7
Manes.18G036400 Manihot esculenta HOM05D000955 ORTHO05D001429 2.7e-06 55.5 57 49.1
Nitab4.5_0008115g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.7e-06 55.5 92 34.8
Sopen04g032660 Solanum pennellii HOM05D000955 ORTHO05D001429 2.7e-06 55.5 83 37.3
Atru.chr13.678 Acer truncatum HOM05D000955 ORTHO05D001429 3.5e-06 55.1 53 49.1
Nitab4.5_0006068g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 3.5e-06 55.1 72 37.5
Atru.chr13.664 Acer truncatum HOM05D000955 ORTHO05D002259 4.6e-06 54.7 77 39.0
Atru.chr13.666 Acer truncatum HOM05D000955 ORTHO05D001429 4.6e-06 54.7 81 38.3
COL.COLO4_26499 Corchorus olitorius HOM05D000955 ORTHO05D001429 4.6e-06 54.7 64 45.3
MELO3C016747.2 Cucumis melo HOM05D000955 ORTHO05D001429 4.6e-06 54.7 84 33.3
Duzib116G0476 Durio zibethinus HOM05D000955 ORTHO05D001429 4.6e-06 54.7 72 40.3
Gohir.D05G263700 Gossypium hirsutum HOM05D000955 ORTHO05D001429 4.6e-06 54.7 78 38.5
Nitab4.5_0000686g0190 Nicotiana tabacum HOM05D000955 ORTHO05D001429 4.6e-06 54.7 72 36.1
Hma1.2p1_0982F.1_g243960 Hydrangea macrophylla HOM05D000955 ORTHO05D001429 6.0e-06 54.3 86 34.9
Nitab4.5_0002468g0040 Nicotiana tabacum HOM05D000955 ORTHO05D001429 6.0e-06 54.3 72 36.1
Sed0019911 Sechium edule HOM05D000955 ORTHO05D001429 6.0e-06 54.3 66 37.9
ClCG11G000380 Citrullus lanatus HOM05D000955 ORTHO05D001429 7.8e-06 53.9 64 42.2
Manes.05G173000 Manihot esculenta HOM05D000955 ORTHO05D001429 7.8e-06 53.9 92 30.4
Nn1g04885 Nelumbo nucifera HOM05D000955 ORTHO05D003340 7.8e-06 53.9 71 38.0
QL02p005085 Quercus lobata HOM05D000955 ORTHO05D001429 7.8e-06 53.9 59 45.8
Rhsim07G0228900 Rhododendron simsii HOM05D000955 ORTHO05D003340 7.8e-06 53.9 62 35.5
Sed0005408 Sechium edule HOM05D000955 ORTHO05D001429 7.8e-06 53.9 64 43.8
PGSC0003DMG400004460 Solanum tuberosum HOM05D000955 ORTHO05D001429 7.8e-06 53.9 66 39.4


User provided reference genes

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