Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 2.1e-58 228.8 113 100.0
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 7.0e-22 107.5 50 98.0
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 1.9e-19 99.4 51 92.2
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 2.5e-19 99.0 50 90.0
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 7.3e-19 97.4 50 88.0
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 7.3e-19 97.4 50 88.0
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 7.3e-19 97.4 50 88.0
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 9.5e-19 97.1 50 86.0
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 2.6e-16 89.0 50 86.0
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 4.4e-16 88.2 50 86.0
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 4.4e-16 88.2 50 86.0
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 4.4e-16 88.2 50 86.0
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 7.5e-16 87.4 50 86.0
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 3.7e-15 85.1 50 84.0
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 4.9e-15 84.7 50 82.0
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 6.4e-15 84.3 49 81.6
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 2.4e-14 82.4 50 78.0
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 2.4e-14 82.4 50 78.0
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 3.2e-14 82.0 48 83.3
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 4.1e-14 81.6 48 81.2
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 4.1e-14 81.6 50 80.0
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 5.4e-14 81.3 50 80.0
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 5.4e-14 81.3 50 80.0
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 5.4e-14 81.3 48 81.2
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 5.4e-14 81.3 50 82.0
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 9.2e-14 80.5 50 78.0
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 9.2e-14 80.5 50 78.0
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 9.2e-14 80.5 50 78.0
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 9.2e-14 80.5 50 78.0
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 9.2e-14 80.5 51 80.4
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 1.6e-13 79.7 50 80.0
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 1.6e-13 79.7 47 78.7
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 1.6e-13 79.7 50 78.0
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 2.0e-13 79.3 49 79.6
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.7e-13 79.0 50 78.0
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 2.7e-13 79.0 51 72.5
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 3.5e-13 78.6 48 77.1
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 3.5e-13 78.6 50 78.0
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 3.5e-13 78.6 50 78.0
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 3.5e-13 78.6 50 78.0
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 3.5e-13 78.6 51 70.6
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 6.0e-13 77.8 52 82.7
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 6.0e-13 77.8 50 76.0
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 7.8e-13 77.4 48 81.2
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 7.8e-13 77.4 50 76.0
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 7.8e-13 77.4 51 70.6
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 7.8e-13 77.4 51 68.6
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.0e-12 77.0 50 76.0
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 1.3e-12 76.6 47 74.5
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 2.3e-12 75.9 50 76.0
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 2.3e-12 75.9 50 74.0
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 2.3e-12 75.9 43 79.1
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 3.9e-12 75.1 50 76.0
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 5.0e-12 74.7 50 72.0
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 6.6e-12 74.3 52 76.9
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 8.6e-12 73.9 50 72.0
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 8.6e-12 73.9 54 74.1
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 8.6e-12 73.9 50 76.0
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.1e-11 73.6 50 74.0
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 1.9e-11 72.8 50 74.0
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 2.5e-11 72.4 51 76.5
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 2.5e-11 72.4 50 76.0
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 4.3e-11 71.6 50 74.0
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 5.6e-11 71.2 51 74.5
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 5.6e-11 71.2 62 61.3
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 7.3e-11 70.9 51 72.5
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.2e-10 70.1 51 74.5
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.2e-10 70.1 51 72.5
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.2e-10 70.1 49 75.5
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 1.6e-10 69.7 49 77.6
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 1.6e-10 69.7 51 74.5
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 1.6e-10 69.7 51 72.5
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 1.6e-10 69.7 51 72.5
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.6e-10 69.7 51 72.5
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.1e-10 69.3 51 74.5
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 3.6e-10 68.6 48 70.8
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.7e-10 68.2 49 73.5
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 4.7e-10 68.2 52 73.1
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 4.7e-10 68.2 53 73.6
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 6.2e-10 67.8 46 71.7
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 8.1e-10 67.4 49 71.4
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 1.1e-09 67.0 51 70.6
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.1e-09 67.0 50 70.0
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 1.1e-09 67.0 51 72.5
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 1.1e-09 67.0 50 66.0
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 1.8e-09 66.2 53 73.6
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.8e-09 66.2 53 64.2
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 1.8e-09 66.2 52 69.2
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 2.3e-09 65.9 50 68.0
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 2.3e-09 65.9 50 68.0
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 3.1e-09 65.5 43 72.1
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 3.1e-09 65.5 53 71.7
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 4.0e-09 65.1 51 70.6
CDE02G0061 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 4.0e-09 65.1 46 63.0
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 5.2e-09 64.7 53 69.8
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 6.8e-09 64.3 54 68.5
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 1.2e-08 63.5 51 66.7
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 1.2e-08 63.5 56 62.5
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.2e-08 63.5 54 68.5
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 2.0e-08 62.8 53 69.8
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 2.0e-08 62.8 53 67.9
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.6e-08 62.4 42 69.0
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 2.6e-08 62.4 42 69.0
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 2.6e-08 62.4 49 69.4
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 2.6e-08 62.4 54 63.0
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 2.6e-08 62.4 54 63.0
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 3.4e-08 62.0 51 70.6
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 3.4e-08 62.0 51 66.7
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 4.4e-08 61.6 60 58.3
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 5.8e-08 61.2 43 67.4
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 7.5e-08 60.8 50 56.0
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 9.9e-08 60.5 34 79.4
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 9.9e-08 60.5 33 75.8
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 9.9e-08 60.5 55 56.4
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 9.9e-08 60.5 55 56.4
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 1.3e-07 60.1 55 56.4
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 6.4e-07 57.8 51 62.7
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.4e-06 56.6 51 62.7
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.9e-06 56.2 56 67.9
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.9e-06 56.2 56 67.9
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 1.9e-06 56.2 31 83.9
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 1.9e-06 56.2 52 65.4
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 1.9e-06 56.2 49 67.3
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 4.1e-06 55.1 45 66.7
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 7.1e-06 54.3 49 67.3


User provided reference genes

Program Settings