Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 9.2e-298 1026.2 535 100.0
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 2.5e-266 921.8 535 85.6
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 2.5e-258 895.2 533 86.1
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 4.1e-245 851.3 535 80.7
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 7.7e-236 820.5 535 80.2
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 1.5e-234 816.2 534 77.5
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 1.0e-232 810.1 533 77.3
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 4.8e-230 801.2 581 71.3
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 4.5e-212 741.5 549 69.8
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 4.5e-212 741.5 535 76.1
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 2.9e-211 738.8 590 66.6
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 3.3e-210 735.3 502 74.5
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 7.0e-205 717.6 536 69.6
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 5.9e-204 714.5 535 73.6
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 1.1e-202 710.3 535 67.5
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 1.5e-202 709.9 565 67.3
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 3.3e-202 708.8 535 67.3
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 5.6e-202 708.0 536 67.4
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 7.3e-202 707.6 532 67.7
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 2.1e-201 706.1 541 65.4
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 1.8e-200 703.0 541 66.0
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 2.3e-200 702.6 542 65.3
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 1.3e-198 696.8 544 66.9
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 4.9e-198 694.9 539 66.8
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 4.1e-197 691.8 539 65.3
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 4.6e-196 688.3 541 64.9
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 6.0e-196 688.0 541 64.9
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 3.0e-195 685.6 534 64.2
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 3.9e-195 685.3 536 65.3
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 1.1e-194 683.7 541 64.5
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 1.5e-194 683.3 537 65.0
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 2.5e-194 682.6 539 65.3
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 3.3e-194 682.2 537 63.5
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 4.3e-194 681.8 530 65.3
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 3.6e-193 678.7 534 65.2
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 1.1e-192 677.2 534 64.0
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 1.2e-191 673.7 536 64.4
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 4.4e-191 671.8 555 61.1
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 1.3e-190 670.2 535 64.1
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 3.7e-190 668.7 560 62.1
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 4.9e-190 668.3 531 64.0
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 6.4e-190 667.9 526 63.5
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 4.1e-189 665.2 531 64.4
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 2.7e-188 662.5 540 63.0
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 4.6e-188 661.8 526 63.3
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 6.0e-188 661.4 530 64.0
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 3.9e-187 658.7 541 62.8
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 5.1e-187 658.3 533 63.4
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 2.5e-186 656.0 531 61.6
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 3.3e-186 655.6 539 62.5
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 2.1e-185 652.9 535 63.9
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 2.8e-185 652.5 526 63.7
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 3.1e-184 649.0 542 62.4
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 1.2e-183 647.1 529 62.2
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 1.2e-183 647.1 536 63.6
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 1.2e-183 647.1 529 62.8
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 1.4e-181 640.2 539 61.2
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 4.1e-181 638.6 536 62.5
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 1.6e-180 636.7 533 62.9
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 2.1e-180 636.3 535 62.6
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 2.7e-180 636.0 534 60.9
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 6.0e-180 634.8 539 61.4
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 3.3e-178 629.0 547 60.1
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 4.3e-178 628.6 535 60.2
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 2.8e-177 625.9 541 60.3
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 2.4e-176 622.9 532 59.2
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 3.1e-176 622.5 527 60.2
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 1.5e-175 620.2 532 60.2
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 5.8e-175 618.2 530 59.4
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 3.8e-174 615.5 532 59.6
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 4.9e-174 615.1 592 55.4
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 2.4e-173 612.8 535 59.1
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 1.2e-172 610.5 534 59.0
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 3.9e-171 605.5 532 58.1
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 5.6e-170 601.7 532 59.0
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 4.6e-164 582.0 458 64.2
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 3.0e-163 579.3 529 56.7
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 4.3e-162 575.5 506 58.7
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 1.5e-159 567.0 541 55.3
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 7.1e-157 558.1 534 55.2
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 2.7e-156 556.2 557 55.7
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 2.7e-156 556.2 536 56.0
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 4.6e-156 555.4 534 55.2
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 7.9e-156 554.7 469 61.2
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 3.9e-155 552.4 536 54.3
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 8.7e-155 551.2 534 54.7
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 9.0e-152 541.2 532 53.6
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 5.8e-151 538.5 437 63.4
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 3.9e-147 525.8 534 53.2
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 5.5e-133 478.8 395 60.8
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 7.9e-132 474.9 395 59.0
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 4.8e-129 465.7 399 59.1
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 1.4e-128 464.2 523 46.7
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 2.2e-126 456.8 573 48.0
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 5.5e-125 452.2 536 46.3
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 3.8e-118 429.5 540 44.3
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 2.3e-107 393.7 498 47.8
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 6.8e-107 392.1 290 69.7
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 2.8e-105 386.7 352 57.1
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 1.1e-104 384.8 352 56.8
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 2.8e-100 370.2 291 66.3
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.3e-97 361.3 551 38.7
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 4.1e-96 356.3 468 41.5
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 2.2e-81 307.4 559 35.8
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 3.5e-79 300.1 389 42.7
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 6.0e-79 299.3 288 56.9
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 5.4e-72 276.2 205 69.3
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 5.4e-64 249.6 200 62.0
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 1.7e-62 244.6 573 32.3
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 8.7e-62 242.3 552 31.3
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 5.8e-58 229.6 136 84.6
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 4.9e-49 199.9 160 63.8
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 6.4e-49 199.5 160 61.9
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 9.6e-45 185.7 168 53.6
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 1.3e-44 185.3 136 69.9
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 2.1e-44 184.5 546 27.8
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.1e-43 182.2 131 71.0
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 7.1e-40 169.5 122 66.4
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 2.0e-34 151.4 152 59.2
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 3.5e-31 140.6 114 64.9
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 3.9e-30 137.1 85 78.8
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 1.4e-27 128.6 93 72.0
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 2.6e-26 124.4 108 61.1
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 3.4e-18 97.4 453 25.6
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 2.2e-17 94.7 128 47.7
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 2.5e-16 91.3 124 46.0
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 6.1e-15 86.7 103 46.6
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 2.3e-14 84.7 71 57.7
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 4.4e-13 80.5 71 54.9
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 4.4e-13 80.5 71 54.9
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 1.2e-10 72.4 69 56.5
arahy.Tifrunner.gnm1.ann1.P90V4Z Arachis hypogaea HOM05D002479 ORTHO05D002675 1.9e-08 65.1 49 65.3
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 4.2e-08 63.9 73 43.8
arahy.Tifrunner.gnm1.ann1.E660H8 Arachis hypogaea HOM05D005625 ORTHO05D007564 1.6e-07 62.0 32 90.6
arahy.Tifrunner.gnm1.ann1.KG76U8 Arachis hypogaea HOM05D005625 ORTHO05D007564 1.6e-07 62.0 32 90.6
arahy.Tifrunner.gnm1.ann1.69Z87Y Arachis hypogaea HOM05D005625 ORTHO05D007564 2.7e-07 61.2 32 90.6
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.0e-06 59.3 182 26.9


User provided reference genes

Program Settings