Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17515 Trifolium pratense HOM05D007026 ORTHO05D008493 1.6e-92 342.8 187 100.0
TPR.G28471 Trifolium pratense HOM05D007026 ORTHO05D008493 5.7e-53 211.5 152 75.0
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 1.3e-44 183.7 272 48.2
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 7.5e-29 131.3 271 39.5
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 9.2e-27 124.4 150 55.3
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 2.5e-24 116.3 175 43.4
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 4.3e-24 115.5 247 38.9
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 8.1e-23 111.3 183 41.5
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 1.4e-22 110.5 238 37.4
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 1.4e-22 110.5 255 37.6
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 2.3e-22 109.8 175 42.3
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 6.8e-22 108.2 253 36.8
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 6.8e-22 108.2 175 42.3
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 2.0e-21 106.7 191 39.3
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 2.0e-21 106.7 219 36.5
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 3.4e-21 105.9 170 41.8
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 7.5e-21 104.8 278 36.0
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 1.3e-20 104.0 138 53.6
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 2.9e-20 102.8 229 38.4
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 6.4e-20 101.7 297 35.0
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 6.4e-20 101.7 170 41.8
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 1.1e-19 100.9 252 36.9
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 2.4e-19 99.8 238 34.9
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 4.1e-19 99.0 246 36.6
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 4.1e-19 99.0 220 38.6
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 5.4e-19 98.6 160 40.6
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 7.1e-19 98.2 229 37.6
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 1.2e-18 97.4 249 36.9
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 2.1e-18 96.7 225 36.0
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 1.3e-17 94.0 223 35.0
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 1.5e-16 90.5 273 33.7
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 2.5e-16 89.7 271 31.0
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 2.5e-16 89.7 175 44.6
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 3.3e-16 89.4 272 32.7
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 9.5e-16 87.8 172 43.6
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 9.5e-16 87.8 148 42.6
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 9.5e-16 87.8 110 50.9
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 2.1e-15 86.7 185 37.3
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 2.1e-15 86.7 247 34.8
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 4.7e-15 85.5 126 46.0
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 6.2e-15 85.1 63 66.7
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 1.4e-14 84.0 63 68.3
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 1.8e-14 83.6 229 33.6
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 1.8e-14 83.6 170 35.3
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 4.0e-14 82.4 66 65.2
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 4.0e-14 82.4 62 69.4
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 5.2e-14 82.0 109 42.2
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 6.8e-14 81.6 83 56.6
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 8.9e-14 81.3 242 33.5
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 8.9e-14 81.3 242 33.5
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 8.9e-14 81.3 152 42.8
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 8.9e-14 81.3 229 33.6
BcaB08g35591 Brassica carinata HOM05D007026 ORTHO05D008493 1.2e-13 80.9 121 44.6
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 4.4e-13 79.0 242 33.1
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 5.8e-13 78.6 225 32.4
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 7.6e-13 78.2 103 49.5
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 7.6e-13 78.2 133 43.6
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 7.6e-13 78.2 54 70.4
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 7.6e-13 78.2 189 32.3
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 7.6e-13 78.2 229 32.3
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 9.9e-13 77.8 244 32.4
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 9.9e-13 77.8 244 32.4
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 1.3e-12 77.4 70 60.0
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 1.3e-12 77.4 183 42.1
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 1.7e-12 77.0 244 32.0
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 2.2e-12 76.6 245 32.2
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 2.2e-12 76.6 245 32.2
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 4.9e-12 75.5 227 29.5
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 8.4e-12 74.7 217 31.3
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 1.1e-11 74.3 243 32.1
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 5.4e-11 72.0 253 31.6
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 9.2e-11 71.2 135 45.9
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 9.2e-11 71.2 62 61.3
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 1.6e-10 70.5 105 41.0
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 2.1e-10 70.1 64 57.8
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 2.1e-10 70.1 252 32.1
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 2.7e-10 69.7 269 33.1
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 4.6e-10 68.9 114 43.0
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.0e-09 67.8 153 37.3
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 2.3e-09 66.6 85 48.2
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 8.6e-09 64.7 144 38.2
AL7G43500 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 8.6e-09 64.7 38 78.9
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 1.5e-08 63.9 137 44.5
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 1.5e-08 63.9 134 42.5
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 3.3e-08 62.8 84 46.4
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 3.3e-08 62.8 74 54.1
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 4.3e-08 62.4 255 31.4
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 7.3e-08 61.6 162 29.6
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 7.3e-08 61.6 67 50.7
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 1.2e-07 60.8 182 28.6
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 3.6e-07 59.3 43 67.4
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 3.6e-07 59.3 127 37.0
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 4.7e-07 58.9 49 59.2
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 1.8e-06 57.0 151 35.8
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 3.1e-06 56.2 37 75.7
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 5.2e-06 55.5 37 75.7
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 5.2e-06 55.5 37 75.7


User provided reference genes

Program Settings