Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 8.9e-116 420.2 205 100.0
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 3.1e-100 368.6 198 89.4
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 8.4e-98 360.5 198 87.9
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 1.2e-91 340.1 196 84.2
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 4.4e-91 338.2 196 83.7
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 8.7e-87 323.9 190 82.6
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 7.3e-86 320.9 191 81.7
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 2.1e-85 319.3 190 81.6
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 2.1e-85 319.3 189 81.5
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 1.1e-84 317.0 190 81.6
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 9.0e-84 313.9 193 79.8
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 9.9e-83 310.5 192 78.1
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 9.9e-83 310.5 189 78.8
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 3.8e-82 308.5 192 78.1
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 2.4e-81 305.8 190 78.4
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 7.1e-81 304.3 190 79.5
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 1.3e-79 300.1 190 75.3
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 3.9e-79 298.5 192 74.5
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 3.9e-79 298.5 192 75.0
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 9.6e-78 293.9 192 75.5
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 8.1e-77 290.8 190 75.3
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 2.6e-75 285.8 188 74.5
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 3.4e-75 285.4 190 72.6
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 5.8e-75 284.6 194 70.6
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 2.9e-74 282.3 194 70.1
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 2.9e-74 282.3 187 73.8
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 3.8e-74 282.0 190 72.1
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 3.8e-74 282.0 173 78.6
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 4.9e-74 281.6 189 72.0
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 6.4e-74 281.2 190 72.1
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.4e-73 280.0 193 69.4
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 1.9e-73 279.6 188 73.4
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 2.4e-73 279.3 190 71.1
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 5.5e-73 278.1 193 68.4
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 5.5e-73 278.1 190 69.5
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 5.5e-73 278.1 193 68.9
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 7.1e-73 277.7 195 69.7
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 9.3e-73 277.3 195 69.2
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 2.1e-72 276.2 195 68.2
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 2.7e-72 275.8 195 68.7
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 2.7e-72 275.8 188 71.3
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.7e-72 275.8 190 68.9
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.5e-72 275.4 193 68.4
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 3.5e-72 275.4 190 70.5
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 4.6e-72 275.0 195 67.7
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 7.9e-72 274.2 190 71.1
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 2.3e-71 272.7 195 67.2
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 3.0e-71 272.3 183 73.2
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 3.0e-71 272.3 187 70.1
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 3.9e-71 271.9 190 69.5
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.9e-71 271.9 190 69.5
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 3.9e-71 271.9 187 70.6
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 3.9e-71 271.9 188 70.7
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 5.1e-71 271.6 190 68.9
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 1.1e-70 270.4 190 70.0
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.5e-70 270.0 187 69.0
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.5e-70 269.2 190 67.4
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 3.3e-70 268.9 187 68.4
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 4.3e-70 268.5 187 68.4
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 7.4e-70 267.7 187 69.0
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 1.6e-69 266.5 187 68.4
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 2.1e-69 266.2 187 70.1
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 6.2e-69 264.6 190 68.9
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 8.1e-69 264.2 190 67.4
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 1.4e-68 263.5 185 68.6
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 1.4e-68 263.5 187 67.9
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 2.4e-68 262.7 194 64.9
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 3.1e-68 262.3 182 70.9
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 3.1e-68 262.3 185 68.6
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 3.1e-68 262.3 185 68.1
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 5.3e-68 261.5 194 64.4
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 5.3e-68 261.5 190 66.8
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 6.9e-68 261.2 196 66.3
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 6.9e-68 261.2 185 68.1
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 9.0e-68 260.8 190 66.3
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 1.2e-67 260.4 186 66.7
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 1.5e-67 260.0 194 63.9
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 2.6e-67 259.2 192 66.1
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 3.4e-67 258.8 192 65.6
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 4.5e-67 258.5 189 65.1
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 4.5e-67 258.5 189 65.1
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 5.8e-67 258.1 190 65.3
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 5.8e-67 258.1 185 65.9
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 7.6e-67 257.7 190 64.2
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 1.3e-66 256.9 186 66.1
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 3.8e-66 255.4 191 68.1
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 6.5e-66 254.6 192 64.6
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 6.5e-66 254.6 186 64.0
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 5.5e-65 251.5 194 63.4
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.5e-64 248.8 199 62.8
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.3e-63 246.9 199 62.3
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 2.3e-63 246.1 192 62.5
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 2.3e-63 246.1 206 58.7
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 3.0e-63 245.7 190 63.7
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 3.0e-63 245.7 189 61.9
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 6.7e-63 244.6 186 66.1
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 8.7e-63 244.2 198 65.7
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.5e-62 242.7 193 62.7
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 3.3e-62 242.3 197 64.5
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 5.7e-62 241.5 200 64.0
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.6e-61 240.0 183 66.1
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.6e-61 240.0 183 66.1
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 2.1e-61 239.6 197 65.0
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 4.8e-61 238.4 192 65.6
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 8.2e-61 237.7 192 62.5
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 1.1e-60 237.3 197 64.0
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 2.4e-60 236.1 188 66.0
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 2.4e-60 236.1 189 65.6
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 3.1e-60 235.7 193 66.3
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 3.1e-60 235.7 193 66.3
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 3.1e-60 235.7 192 65.1
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 4.1e-60 235.3 192 65.1
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 5.3e-60 235.0 192 65.1
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 1.2e-59 233.8 196 64.3
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 3.4e-59 232.3 197 62.9
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 7.6e-59 231.1 187 65.2
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.4e-57 226.9 189 58.7
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 3.2e-57 225.7 187 63.6
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 9.3e-57 224.2 186 57.5
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 9.3e-57 224.2 190 57.4
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 1.0e-55 220.7 190 56.8
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 3.0e-55 219.2 196 59.7
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 5.9e-51 204.9 165 61.8
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 7.7e-51 204.5 193 59.1
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 1.7e-50 203.4 165 59.4
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 2.4e-44 183.0 185 57.3
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.9e-41 173.3 142 62.0
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.9e-41 173.3 117 72.6
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 2.7e-40 169.5 197 48.7
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.4e-39 167.2 145 62.8
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 8.2e-37 157.9 117 69.2
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 2.0e-35 153.3 106 67.0
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 1.2e-32 144.1 110 69.1
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 8.0e-32 141.4 104 68.3
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 3.7e-29 132.5 188 43.1
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 8.2e-29 131.3 139 56.1
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 1.4e-28 130.6 110 64.5
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 5.9e-27 125.2 110 61.8
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 2.9e-26 122.9 198 38.9
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 3.2e-25 119.4 96 57.3
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 2.2e-21 106.7 93 54.8
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 2.2e-21 106.7 93 54.8
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 1.3e-10 70.9 50 60.0


User provided reference genes

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