Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 8.5e-99 363.6 177 100.0
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 3.0e-80 302.0 200 78.0
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 1.6e-76 289.7 196 73.0
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 9.2e-69 263.8 206 66.0
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 1.0e-67 260.4 197 68.5
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 8.6e-67 257.3 202 66.3
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 3.4e-63 245.4 197 65.0
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 5.8e-63 244.6 197 65.0
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 6.4e-62 241.1 160 76.9
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 1.4e-61 240.0 177 71.2
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 4.1e-61 238.4 201 62.2
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 5.4e-61 238.0 201 61.7
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.2e-57 226.9 202 58.4
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 1.2e-57 226.9 194 58.2
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 4.7e-57 224.9 202 57.4
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 1.1e-56 223.8 193 56.5
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 1.8e-56 223.0 198 56.6
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 5.2e-56 221.5 194 56.7
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 7.6e-55 217.6 171 63.2
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 6.4e-54 214.5 195 54.4
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 7.1e-53 211.1 196 54.1
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 1.2e-52 210.3 196 52.6
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 1.6e-52 209.9 196 54.1
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 2.1e-52 209.5 196 51.5
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 1.0e-51 207.2 199 52.3
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 3.0e-51 205.7 197 52.8
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 3.9e-51 205.3 201 53.2
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 1.5e-50 203.4 200 52.5
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 1.9e-50 203.0 197 52.3
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 5.6e-50 201.4 195 50.8
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 5.6e-50 201.4 196 54.6
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 7.3e-50 201.1 199 51.3
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.6e-49 199.9 195 53.3
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 4.7e-49 198.4 200 51.5
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 6.2e-49 198.0 199 51.3
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 1.1e-48 197.2 199 51.3
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 1.4e-48 196.8 193 51.8
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.4e-48 196.8 195 52.8
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 1.4e-48 196.8 196 52.6
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 2.4e-48 196.1 192 51.6
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 5.2e-48 194.9 199 52.3
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 2.0e-47 193.0 197 51.3
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 2.0e-47 193.0 199 51.8
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 2.6e-47 192.6 193 49.7
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 3.4e-47 192.2 196 51.5
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 3.4e-47 192.2 191 52.4
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 9.9e-47 190.7 130 73.8
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 1.7e-46 189.9 198 51.0
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 2.9e-46 189.1 190 52.6
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 2.9e-46 189.1 189 50.8
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 3.8e-46 188.7 199 49.7
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 3.8e-46 188.7 193 50.8
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 8.4e-46 187.6 195 51.8
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 1.4e-45 186.8 193 48.7
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.9e-45 186.4 199 53.3
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 1.9e-45 186.4 195 51.8
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 1.9e-45 186.4 193 52.3
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 4.2e-45 185.3 190 51.1
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 5.4e-45 184.9 201 51.2
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 3.5e-44 182.2 201 50.7
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 1.3e-43 180.3 198 53.0
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 1.7e-43 179.9 192 50.0
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 3.9e-43 178.7 211 50.2
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.1e-42 177.2 163 58.3
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 1.5e-42 176.8 203 50.2
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 2.5e-42 176.0 192 50.0
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 5.6e-42 174.9 185 51.4
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 9.6e-42 174.1 182 51.6
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 4.0e-40 168.7 196 49.5
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 5.3e-40 168.3 167 53.9
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 1.2e-39 167.2 187 49.2
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 1.2e-39 167.2 184 51.1
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 1.5e-39 166.8 184 52.2
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 1.5e-39 166.8 191 48.2
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 1.5e-39 166.8 156 55.1
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 9.9e-39 164.1 187 46.0
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 9.9e-39 164.1 186 46.8
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 1.3e-38 163.7 187 46.0
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 1.7e-38 163.3 195 46.2
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.8e-38 162.2 185 50.3
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 8.4e-38 161.0 186 47.3
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 8.4e-38 161.0 185 48.1
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 1.9e-37 159.8 188 45.7
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 3.2e-37 159.1 194 43.8
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 1.2e-36 157.1 190 45.8
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.2e-36 157.1 178 47.2
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 1.6e-36 156.8 186 46.8
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 2.7e-36 156.0 190 45.8
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 6.0e-36 154.8 181 48.6
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 7.9e-36 154.5 161 52.8
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 7.9e-36 154.5 161 52.8
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 1.7e-35 153.3 190 45.3
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 1.7e-35 153.3 190 45.3
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.5e-34 149.4 195 44.6
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 2.1e-33 146.4 185 46.5
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 3.6e-33 145.6 152 48.0
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 4.8e-33 145.2 155 47.1
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 1.1e-32 144.1 157 46.5
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.2e-31 140.6 158 50.0
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 1.5e-31 140.2 147 51.0
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 2.2e-30 136.3 192 44.3
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 3.2e-29 132.5 99 59.6
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 2.1e-25 119.8 85 65.9
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.1e-25 119.8 144 45.1
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 9.0e-24 114.4 93 57.0
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 1.2e-23 114.0 156 37.2
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.5e-21 105.1 133 42.9
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 1.6e-20 103.6 91 51.6
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 1.3e-19 100.5 85 54.1
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 1.8e-19 100.1 139 41.0
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 7.4e-18 94.7 52 88.5
Medtr0590s0020 Medicago truncatula HOM05D007003 ORTHO05D263438 4.8e-17 92.0 159 33.3
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 2.4e-16 89.7 97 51.5
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 4.1e-16 89.0 111 41.4
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 2.7e-12 76.3 60 58.3


User provided reference genes

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