Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 0.0e+00 1280.0 676 100.0
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 1.9e-255 885.9 684 74.7
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 1.6e-193 680.2 692 62.7
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 3.5e-193 679.1 648 64.2
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 2.1e-182 643.3 710 58.0
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 2.6e-172 609.8 739 54.7
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 9.9e-172 607.8 736 55.7
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 1.1e-167 594.3 707 54.2
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 2.1e-153 547.0 712 52.4
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 3.0e-152 543.1 707 51.6
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 6.1e-137 492.3 748 48.8
Lalb_Chr02g0140881 Lupinus albus HOM05D003765 ORTHO05D004561 1.7e-134 484.2 721 48.4
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 3.6e-129 466.5 735 47.3
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 1.8e-128 464.2 744 47.0
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 1.2e-124 451.4 761 46.9
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 7.2e-122 442.2 748 46.8
arahy.Tifrunner.gnm1.ann1.S2H83J Arachis hypogaea HOM05D003765 ORTHO05D004561 1.2e-121 441.4 698 47.1
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 9.4e-114 415.2 671 46.9
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 8.5e-107 392.1 738 41.6
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 1.1e-98 365.2 740 41.8
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 2.3e-96 357.5 742 39.9
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 8.3e-94 349.0 714 41.2
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 2.0e-92 344.4 769 39.5
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 3.9e-91 340.1 743 39.8
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 6.6e-91 339.3 744 39.2
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 9.5e-90 335.5 728 38.5
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 1.8e-88 331.3 747 40.2
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 6.8e-88 329.3 765 38.0
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 2.0e-87 327.8 761 37.7
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 8.3e-86 322.4 799 37.8
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 1.0e-83 315.5 755 37.4
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 4.3e-82 310.1 693 39.0
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 4.3e-82 310.1 730 37.8
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 2.8e-81 307.4 721 39.1
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 2.8e-81 307.4 759 37.9
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 6.2e-81 306.2 719 39.1
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 6.2e-81 306.2 722 39.1
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 6.2e-81 306.2 722 39.1
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.8e-80 304.7 719 39.2
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 1.8e-80 304.7 761 37.8
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 3.1e-80 303.9 745 36.9
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 8.9e-80 302.4 737 36.9
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 4.4e-79 300.1 721 38.3
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 5.8e-79 299.7 718 38.4
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 2.2e-78 297.7 770 36.5
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 7.8e-76 289.3 684 36.1
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 3.0e-75 287.3 620 39.5
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 8.6e-75 285.8 696 35.3
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 7.3e-74 282.7 733 36.4
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 1.4e-72 278.5 787 34.4
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 4.0e-72 276.9 754 35.5
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 5.2e-72 276.6 608 40.0
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 1.5e-71 275.0 701 34.8
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 2.0e-71 274.6 736 35.1
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 3.4e-71 273.9 719 34.9
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 8.4e-70 269.2 706 34.4
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 1.1e-69 268.9 706 35.8
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 2.4e-69 267.7 717 35.3
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 2.3e-67 261.2 813 34.9
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 3.0e-67 260.8 771 33.2
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 8.6e-67 259.2 761 33.4
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.2e-65 255.4 777 33.2
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.6e-65 255.0 725 33.1
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 1.4e-64 251.9 763 33.4
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 3.1e-64 250.8 493 42.2
arahy.Tifrunner.gnm1.ann1.3X1084 Arachis hypogaea HOM05D003765 ORTHO05D004561 1.2e-63 248.8 793 35.7
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 1.2e-63 248.8 785 33.5
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 3.4e-63 247.3 706 34.0
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 7.6e-63 246.1 782 32.6
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 1.7e-62 245.0 705 33.8
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 3.8e-62 243.8 754 33.3
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 1.4e-61 241.9 707 36.4
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 2.4e-61 241.1 782 32.2
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 5.4e-61 240.0 697 35.4
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 6.6e-59 233.0 753 33.9
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 4.3e-58 230.3 617 36.3
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 2.8e-57 227.6 738 34.1
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 1.1e-56 225.7 696 34.3
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 2.6e-55 221.1 610 35.7
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 5.8e-55 219.9 732 32.5
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 9.9e-55 219.2 720 32.9
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 6.4e-54 216.5 732 32.2
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 1.0e-51 209.1 287 51.9
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 3.9e-51 207.2 741 31.0
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 3.3e-50 204.1 725 31.9
arahy.Tifrunner.gnm1.ann1.XAW92V Arachis hypogaea HOM05D003765 ORTHO05D004561 9.6e-50 202.6 799 32.7
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 1.3e-49 202.2 706 31.7
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 2.8e-49 201.1 802 30.8
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 8.1e-49 199.5 711 33.1
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 3.1e-48 197.6 702 31.6
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 9.0e-48 196.1 712 31.2
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 9.0e-48 196.1 711 31.5
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 5.8e-47 193.4 705 31.5
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 7.6e-47 193.0 689 30.9
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 9.9e-47 192.6 746 30.4
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 1.4e-45 188.7 721 31.8
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.9e-45 188.3 692 31.6
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 4.2e-45 187.2 720 30.3
DCAR_009410 Daucus carota HOM05D003765 ORTHO05D004561 1.0e-43 182.6 663 33.0
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 2.3e-43 181.4 710 30.6
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 3.0e-43 181.0 732 30.2
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 8.7e-43 179.5 685 29.9
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 1.5e-42 178.7 732 30.2
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 5.6e-42 176.8 474 36.9
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.6e-41 175.3 704 31.1
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 3.7e-41 174.1 719 30.2
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 4.8e-41 173.7 706 31.2
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 8.1e-41 172.9 734 29.2
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 5.3e-40 170.2 587 33.2
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 1.5e-39 168.7 748 29.9
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 1.0e-38 166.0 722 30.9
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 1.3e-38 165.6 603 31.5
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 2.7e-36 157.9 651 30.1
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 3.5e-36 157.5 669 29.6
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 4.6e-36 157.1 618 30.7
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 6.0e-36 156.8 734 31.2
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 6.0e-36 156.8 694 29.5
SGA_v2.0_scaffold113G31787 Striga asiatica HOM05D003765 ORTHO05D004561 6.0e-36 156.8 711 28.3
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 1.3e-35 155.6 701 28.8
CsaV3_3G016640 Cucumis sativus L. HOM05D003765 ORTHO05D004561 1.9e-34 151.8 720 28.6
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 3.3e-34 151.0 674 27.4
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 3.3e-34 151.0 712 28.9
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 7.4e-34 149.8 670 29.6
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 1.3e-33 149.1 708 29.7
MELO3C006859.2 Cucumis melo HOM05D003765 ORTHO05D004561 3.4e-31 141.0 679 30.8
VMungo0464G2043 Vigna mungo HOM05D003765 ORTHO05D004561 1.3e-30 139.0 240 42.1
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 7.2e-29 133.3 671 28.3
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 7.9e-28 129.8 645 27.1
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 2.5e-26 124.8 675 26.8
Lalb_Chr19g0131131 Lupinus albus HOM05D003765 ORTHO05D004561 1.6e-25 122.1 498 30.9
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 2.4e-24 118.2 649 28.2
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 4.5e-23 114.0 234 39.3
Aa31LG6G8690 Aethionema arabicum HOM05D003765 ORTHO05D004561 3.8e-22 110.9 267 36.3
VMungo0720G0588 Vigna mungo HOM05D003765 ORTHO05D004561 1.9e-21 108.6 144 44.4
ATR0661G439 Amborella trichopoda HOM05D003765 ORTHO05D004561 2.5e-21 108.2 794 24.1
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 2.5e-21 108.2 653 26.8
VMungo0100G0003 Vigna mungo HOM05D003765 ORTHO05D004561 5.5e-21 107.1 109 60.6
Carub.0008s1189 Capsella rubella HOM05D003765 ORTHO05D004561 7.2e-21 106.7 557 28.2
Migut.F00398 Erythranthe guttata HOM05D003765 ORTHO05D004561 9.4e-21 106.3 297 31.6
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 9.4e-21 106.3 484 27.9
VMungo0251G2630 Vigna mungo HOM05D003765 ORTHO05D004561 1.2e-20 105.9 109 59.6
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 3.9e-19 100.9 390 30.3
unitig_37.g11944 Utricularia gibba HOM05D003765 ORTHO05D004561 3.9e-19 100.9 264 37.1
BcaB08g35538 Brassica carinata HOM05D003765 ORTHO05D004561 2.2e-17 95.1 331 31.4
BcaB03g12466 Brassica carinata HOM05D003765 ORTHO05D004561 6.3e-17 93.6 341 29.6
AT4G25430 Arabidopsis thaliana HOM05D003765 ORTHO05D023707 1.1e-16 92.8 284 31.7
unitig_22.g5225 Utricularia gibba HOM05D003765 ORTHO05D004561 1.4e-16 92.4 216 34.3
C09p41340 Brassica napus HOM05D003765 ORTHO05D004561 2.4e-16 91.7 342 30.7
AUR62021267 Chenopodium quinoa HOM05D003765 ORTHO05D004561 3.1e-16 91.3 462 30.3
A10p09680 Brassica napus HOM05D003765 ORTHO05D004561 4.1e-16 90.9 472 26.3
A08p21190 Brassica napus HOM05D003765 ORTHO05D004561 2.0e-15 88.6 350 31.1
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 2.0e-15 88.6 472 26.1
BolC9t57009H Brassica oleracea HOM05D003765 ORTHO05D004561 2.6e-15 88.2 476 27.3
ClCG01G005340 Citrullus lanatus HOM05D003765 ORTHO05D004561 4.5e-15 87.4 714 25.9
BraA08t34069Z Brassica rapa HOM05D003765 ORTHO05D004561 7.7e-15 86.7 350 30.9
BraA09t36408Z Brassica rapa HOM05D003765 ORTHO05D004561 7.7e-15 86.7 385 28.3
BolC8t48608H Brassica oleracea HOM05D003765 ORTHO05D004561 1.0e-14 86.3 298 31.5
HanXRQChr15g0486221 Helianthus annuus HOM05D003765 ORTHO05D004561 1.7e-14 85.5 404 27.7
HPP92_022139 Vanilla planifolia HOM05D003765 ORTHO05D004561 2.2e-14 85.1 708 22.7
BcaC07g38188 Brassica carinata HOM05D003765 ORTHO05D004561 3.8e-14 84.3 298 32.9
HPP92_022144 Vanilla planifolia HOM05D003765 ORTHO05D004561 3.8e-14 84.3 684 23.2
A09p07540 Brassica napus HOM05D003765 ORTHO05D004561 1.4e-13 82.4 394 27.7
Lalb_Chr19g0131141 Lupinus albus HOM05D003765 ORTHO05D004561 5.5e-13 80.5 230 33.5
Dinv28507 Davidia involucrata HOM05D003765 ORTHO05D004561 9.4e-13 79.7 153 35.3
BolC9t53753H Brassica oleracea HOM05D003765 ORTHO05D004561 7.9e-12 76.6 412 27.4
Zm00001eb418620 Zea mays HOM05D003765 ORTHO05D004561 6.7e-11 73.6 159 35.2
CsaV3_5G005590 Cucumis sativus L. HOM05D003765 ORTHO05D004561 8.8e-11 73.2 376 29.0
Sed0026899 Sechium edule HOM05D003765 ORTHO05D004561 2.0e-10 72.0 622 26.7
C09p08430 Brassica napus HOM05D003765 ORTHO05D004561 2.6e-10 71.6 424 26.7
Carub.0007s1558 Capsella rubella HOM05D003765 ORTHO05D004561 1.3e-09 69.3 208 34.1
BcaNung01408 Brassica carinata HOM05D003765 ORTHO05D004561 1.7e-09 68.9 412 26.5
BcaNung01409 Brassica carinata HOM05D003765 ORTHO05D004561 1.7e-09 68.9 412 26.5
Duzib205G0479 Durio zibethinus HOM05D003765 ORTHO05D004561 2.8e-09 68.2 92 47.8
SEGI_17592 Sequoiadendron giganteum HOM05D003765 ORTHO05D004561 4.8e-09 67.4 179 28.5
AL7G27690 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 5.3e-08 63.9 386 28.8
BcaC04g23427 Brassica carinata HOM05D003765 ORTHO05D004561 5.3e-08 63.9 368 26.9
Os04g0106500 Oryza sativa ssp. japonica HOM05D003765 ORTHO05D004561 7.0e-08 63.5 653 23.3
COL.COLO4_18507 Corchorus olitorius HOM05D002515 ORTHO05D002722 1.6e-07 62.4 221 27.6
Aa31LG11G13990 Aethionema arabicum HOM05D001693 ORTHO05D001588 5.0e-06 57.4 202 27.7


User provided reference genes

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