Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 1.2e-203 713.0 362 100.0
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 5.5e-185 651.0 362 90.6
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 1.3e-183 646.4 360 90.6
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 4.2e-177 624.8 362 87.3
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 1.2e-168 596.7 344 87.5
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 4.6e-168 594.7 369 81.8
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 2.8e-157 558.9 369 78.3
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 6.3e-157 557.8 369 76.2
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 1.2e-152 543.5 362 77.1
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 2.1e-152 542.7 362 76.8
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 2.2e-149 532.7 369 72.4
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 2.2e-149 532.7 369 75.1
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 1.9e-145 519.6 369 72.4
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 9.4e-145 517.3 365 72.3
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 2.1e-144 516.2 352 76.7
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 8.8e-143 510.8 371 70.9
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 1.2e-142 510.4 371 71.4
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.5e-142 510.0 371 71.2
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.3e-141 506.9 365 71.8
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 5.4e-140 501.5 371 68.5
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 2.0e-139 499.6 366 71.6
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 2.2e-138 496.1 371 69.5
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 5.0e-138 495.0 373 69.7
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 1.5e-137 493.4 371 68.2
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 1.9e-137 493.0 346 75.4
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 1.2e-136 490.3 370 67.3
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.6e-136 490.0 372 68.0
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 4.7e-136 488.4 372 68.0
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 4.7e-136 488.4 373 68.1
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 8.0e-136 487.6 373 69.2
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 8.0e-136 487.6 371 67.9
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 2.0e-134 483.0 372 67.7
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.6e-134 482.6 362 68.8
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 2.8e-133 479.2 371 69.0
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 2.4e-132 476.1 371 64.2
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 3.1e-132 475.7 371 65.2
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 9.2e-132 474.2 370 64.3
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.6e-131 473.4 375 64.3
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.6e-131 473.4 371 66.3
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 2.7e-131 472.6 370 66.2
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 2.9e-130 469.2 380 66.6
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.9e-129 466.5 376 64.6
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 2.5e-129 466.1 371 63.9
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 7.3e-129 464.5 369 65.3
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 9.5e-129 464.2 366 63.7
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 4.0e-127 458.8 369 62.3
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 6.8e-127 458.0 369 65.6
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 9.8e-126 454.1 363 63.9
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 6.4e-125 451.4 365 65.8
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.8e-124 449.9 368 62.8
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.8e-124 449.9 368 62.8
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 2.4e-124 449.5 362 63.8
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 9.2e-124 447.6 373 60.9
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 2.0e-123 446.4 370 61.4
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 2.0e-123 446.4 369 61.2
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 1.3e-122 443.7 363 62.0
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 3.0e-122 442.6 376 63.0
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 7.3e-121 438.0 375 61.9
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 1.6e-120 436.8 372 62.4
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.6e-120 435.6 371 58.8
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 6.2e-120 434.9 366 63.4
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 1.0e-119 434.1 412 55.1
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 3.1e-119 432.6 363 62.3
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 4.0e-119 432.2 366 62.6
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 9.8e-118 427.6 362 61.0
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 9.8e-118 427.6 357 61.9
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 4.9e-117 425.2 369 58.5
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 4.9e-117 425.2 371 59.8
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 6.4e-117 424.9 369 58.5
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 1.1e-116 424.1 376 59.6
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 1.2e-115 420.6 339 64.9
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 3.5e-115 419.1 374 58.3
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 4.6e-115 418.7 350 64.3
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 6.0e-115 418.3 363 58.7
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 1.0e-114 417.5 372 58.6
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 1.3e-114 417.2 347 64.8
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 1.7e-114 416.8 375 57.9
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 1.7e-114 416.8 378 59.8
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 3.0e-114 416.0 372 58.6
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 5.0e-114 415.2 347 60.8
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 8.6e-114 414.5 396 56.8
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 7.3e-113 411.4 381 57.2
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 7.3e-113 411.4 349 60.2
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 9.5e-113 411.0 375 59.5
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 9.5e-113 411.0 375 57.1
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.1e-112 409.8 374 59.4
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 2.8e-112 409.5 375 57.1
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 2.8e-112 409.5 348 61.5
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 3.6e-112 409.1 347 62.0
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 4.7e-112 408.7 371 57.7
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 6.2e-112 408.3 373 57.6
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 8.1e-112 407.9 378 56.9
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 2.3e-111 406.4 362 62.2
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 4.0e-111 405.6 372 59.1
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.2e-110 404.1 362 60.8
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 1.5e-110 403.7 376 56.6
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 4.4e-110 402.1 375 56.8
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 4.4e-110 402.1 386 57.8
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 3.7e-109 399.1 327 63.9
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 1.9e-108 396.7 374 56.4
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 7.8e-107 391.3 330 61.2
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 5.6e-105 385.2 301 67.4
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 8.1e-104 381.3 346 57.2
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 4.0e-103 379.0 354 55.9
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 8.9e-103 377.9 322 60.9
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.9e-100 370.2 376 55.3
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 9.2e-100 367.9 370 50.5
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 2.1e-99 366.7 324 59.6
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 6.0e-99 365.2 370 50.3
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 7.8e-99 364.8 372 51.1
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 2.3e-98 363.2 336 58.6
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 5.1e-98 362.1 370 50.3
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.5e-97 359.8 369 49.6
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 7.3e-97 358.2 304 60.5
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 2.1e-96 356.7 368 55.2
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 6.9e-95 351.7 382 51.3
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 7.6e-94 348.2 333 56.8
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.8e-93 345.9 393 47.1
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 6.2e-88 328.6 348 49.1
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.9e-84 317.0 372 49.7
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 9.9e-78 294.7 472 39.8
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 2.2e-77 293.5 377 44.6
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 8.4e-77 291.6 295 54.9
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 1.4e-76 290.8 216 67.6
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 1.4e-76 290.8 294 55.1
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 1.2e-75 287.7 339 47.5
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 1.4e-68 264.2 403 38.0
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 2.1e-67 260.4 274 53.3
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 2.7e-67 260.0 379 38.3
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 1.9e-65 253.8 291 51.2
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.6e-64 250.8 241 56.8
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 4.8e-64 249.2 379 39.3
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 2.0e-62 243.8 260 54.2
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 3.6e-59 233.0 222 56.8
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 5.1e-58 229.2 247 53.0
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.5e-54 217.6 260 46.9
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 3.4e-54 216.5 330 38.5
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.0e-53 214.9 242 52.9
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.6e-51 207.6 191 53.9
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 9.7e-49 198.4 205 55.6
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 4.8e-48 196.1 381 33.1
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.4e-47 194.5 115 76.5
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.8e-47 194.1 137 67.2
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 3.9e-42 176.4 158 60.1
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 3.8e-29 133.3 73 89.0
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 4.0e-26 123.2 149 50.3
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 2.2e-24 117.5 423 24.3
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 3.1e-23 113.6 201 31.8
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 8.0e-19 99.0 120 45.8
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 1.2e-17 95.1 73 65.8
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 4.1e-15 86.7 42 97.6
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 3.7e-08 63.5 77 44.2
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.1e-07 62.0 66 53.0
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 1.1e-07 62.0 49 61.2


User provided reference genes

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