Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17393 Trifolium pratense HOM05D007974 ORTHO05D010062 7.4e-65 250.4 125 100.0
Medtr1g101320 Medicago truncatula HOM05D007974 ORTHO05D010062 6.3e-48 194.1 124 79.8
Glyma.20G156300 Glycine max HOM05D007974 ORTHO05D010062 1.8e-42 176.0 122 73.0
VMungo0720G1552 Vigna mungo HOM05D007974 ORTHO05D010062 1.1e-39 166.8 122 68.0
arahy.Tifrunner.gnm1.ann1.G5CYYB Arachis hypogaea HOM05D007974 ORTHO05D010062 7.7e-38 160.6 115 68.7
Phvul.007G067200 Phaseolus vulgaris HOM05D007974 ORTHO05D010062 5.0e-37 157.9 122 65.6
LjContig00238g0026064 Lotus japonicus HOM05D007974 ORTHO05D010062 1.1e-36 156.8 121 64.5
Glyma.10G238250 Glycine max HOM05D007974 ORTHO05D010062 8.9e-34 147.1 102 68.6
EL10Ac3g05720 Beta vulgaris HOM05D007974 ORTHO05D010062 8.3e-32 140.6 119 56.3
CSS0036952 Camellia sinensis var. sinensis HOM05D007974 ORTHO05D010062 1.8e-31 139.4 108 60.2
Hma1.2p1_0270F.1_g108330 Hydrangea macrophylla HOM05D007974 ORTHO05D010062 3.1e-31 138.7 114 61.4
Duzib068G0871 Durio zibethinus HOM05D007974 ORTHO05D010062 1.6e-30 136.3 110 58.2
GSVIVG01010603001 Vitis vinifera HOM05D007974 ORTHO05D010062 1.6e-30 136.3 94 67.0
Potri.012G139700 Populus trichocarpa HOM05D007974 ORTHO05D010062 4.5e-30 134.8 109 56.9
Actinidia34090 Actinidia chinensis HOM05D007974 ORTHO05D010062 1.0e-29 133.7 111 57.7
MSTRG.8445 Avicennia marina HOM05D007974 ORTHO05D010062 1.0e-29 133.7 98 62.2
Thecc.03G172000 Theobroma cacao HOM05D007974 ORTHO05D010062 1.3e-29 133.3 107 58.9
Actinidia32884 Actinidia chinensis HOM05D007974 ORTHO05D010062 2.3e-29 132.5 107 59.8
Dinv28469 Davidia involucrata HOM05D007974 ORTHO05D010062 2.9e-29 132.1 91 63.7
Manes.06G145100 Manihot esculenta HOM05D007974 ORTHO05D010062 2.9e-29 132.1 104 60.6
QL09p014742 Quercus lobata HOM05D007974 ORTHO05D010062 3.8e-29 131.7 110 58.2
Aqoxy5G03970 Aquilegia oxysepala HOM05D007974 ORTHO05D010062 5.0e-29 131.3 107 57.9
DCAR_018180 Daucus carota HOM05D007974 ORTHO05D010062 1.9e-28 129.4 111 54.1
Rhsim03G0178300 Rhododendron simsii HOM05D007974 ORTHO05D010062 1.9e-28 129.4 113 57.5
Atru.chr1.506 Acer truncatum HOM05D007974 ORTHO05D010062 4.3e-28 128.3 106 56.6
MD01G1197800 Malus domestica HOM05D007974 ORTHO05D010062 7.3e-28 127.5 122 51.6
Nitab4.5_0004843g0030 Nicotiana tabacum HOM05D007974 ORTHO05D010062 2.1e-27 125.9 88 63.6
Cpa.g.sc107.23 Carica papaya HOM05D007974 ORTHO05D010062 3.6e-27 125.2 108 53.7
CiPaw.04G066500 Carya illinoinensis HOM05D007974 ORTHO05D010062 3.6e-27 125.2 104 54.8
Nn6g34222 Nelumbo nucifera HOM05D007974 ORTHO05D010062 4.7e-27 124.8 121 52.9
Oeu022576.1 Olea europaea HOM05D007974 ORTHO05D010062 6.1e-27 124.4 91 56.0
CiPaw.03G103600 Carya illinoinensis HOM05D007974 ORTHO05D010062 8.0e-27 124.0 111 57.7
Lsat_1_v5_gn_8_6981 Lactuca sativa HOM05D007974 ORTHO05D010062 8.0e-27 124.0 91 57.1
Nitab4.5_0002107g0020 Nicotiana tabacum HOM05D007974 ORTHO05D010062 1.4e-26 123.2 110 52.7
Sopen03g004930 Solanum pennellii HOM05D007974 ORTHO05D010062 1.4e-26 123.2 90 63.3
PGSC0003DMG400014320 Solanum tuberosum HOM05D007974 ORTHO05D010062 1.4e-26 123.2 90 63.3
Solyc03g026090.4 Solanum lycopersicum HOM05D007974 ORTHO05D010062 1.8e-26 122.9 90 62.2
COL.COLO4_14276 Corchorus olitorius HOM05D000659 ORTHO05D000505 2.3e-26 122.5 112 52.7
ECA233G5549 Erigeron canadensis HOM05D007974 ORTHO05D010062 2.3e-26 122.5 104 51.0
HanXRQChr13g0393691 Helianthus annuus HOM05D007974 ORTHO05D010062 2.3e-26 122.5 107 50.5
MBI12_g15161_MAGBIO Magnolia biondii HOM05D007974 ORTHO05D010062 3.0e-26 122.1 107 56.1
Ciclev10006787m.g Citrus clementina HOM05D007974 ORTHO05D010062 4.0e-26 121.7 87 58.6
Migut.F01135 Erythranthe guttata HOM05D007974 ORTHO05D010062 4.0e-26 121.7 89 60.7
Prupe.2G291200 Prunus persica HOM05D007974 ORTHO05D010062 4.0e-26 121.7 117 53.0
Eucgr.K00232 Eucalyptus grandis HOM05D007974 ORTHO05D010062 5.2e-26 121.3 102 54.9
Eucgr.L02686 Eucalyptus grandis HOM05D007974 ORTHO05D010062 5.2e-26 121.3 102 54.9
CAN.G769.6 Capsicum annuum HOM05D007974 ORTHO05D010062 8.9e-26 120.6 90 62.2
Gorai.008G279400 Gossypium raimondii HOM05D007974 ORTHO05D010062 2.2e-24 115.9 110 49.1
Sc19g0000020 Simmondsia chinensis HOM05D007974 ORTHO05D010062 6.4e-24 114.4 102 53.9
PGR142G2606 Punica granatum HOM05D007974 ORTHO05D010062 8.3e-24 114.0 104 51.0
Gohir.A12G260000 Gossypium hirsutum HOM05D007974 ORTHO05D010062 2.4e-23 112.5 107 48.6
Gohir.D12G260800 Gossypium hirsutum HOM05D007974 ORTHO05D010062 3.2e-23 112.1 107 48.6
Sabra12G0104700 Salix brachista HOM05D000659 ORTHO05D000505 3.2e-23 112.1 88 54.5
Sc19g0001640 Simmondsia chinensis HOM05D007974 ORTHO05D010062 7.0e-23 110.9 108 49.1
Thhalv10005335m.g Eutrema salsugineum HOM05D007974 ORTHO05D010062 1.2e-22 110.2 91 52.7
RcHm_v2.0_Chr1g0376841 Rosa chinensis HOM05D007974 ORTHO05D010062 1.2e-22 110.2 112 49.1
Cfa008290 Carpinus fangiana HOM05D007974 ORTHO05D010062 2.0e-22 109.4 110 51.8
ATR0757G011 Amborella trichopoda HOM05D007974 ORTHO05D010062 3.5e-22 108.6 104 47.1
BcaB02g09619 Brassica carinata HOM05D007974 ORTHO05D010062 8.6e-21 104.0 101 48.5
C03p64890 Brassica napus HOM05D007974 ORTHO05D010062 2.5e-20 102.4 108 47.2
BolC3t18751H Brassica oleracea HOM05D007974 ORTHO05D010062 2.5e-20 102.4 108 47.2
Aa31LG11G1470 Aethionema arabicum HOM05D007974 ORTHO05D010062 3.3e-20 102.1 110 45.5
AL8G38840 Arabidopsis lyrata HOM05D007974 ORTHO05D010062 3.3e-20 102.1 88 50.0
AT5G62065 Arabidopsis thaliana HOM05D007974 ORTHO05D010062 3.3e-20 102.1 109 44.0
FAN03G0127 Fragaria x ananassa HOM05D007974 ORTHO05D010062 7.3e-20 100.9 116 45.7
FAN10G0057 Fragaria x ananassa HOM05D007974 ORTHO05D010062 9.5e-20 100.5 115 44.3
FAN06G2079 Fragaria x ananassa HOM05D007974 ORTHO05D010062 1.6e-19 99.8 115 44.3
Sp2g25230 Schrenkiella parvula HOM05D007974 ORTHO05D010062 1.6e-19 99.8 90 50.0
Carub.0008s2274 Capsella rubella HOM05D007974 ORTHO05D010062 2.1e-19 99.4 111 45.9
A06p28760 Brassica napus HOM05D007974 ORTHO05D010062 4.7e-19 98.2 105 48.6
BraA06t25817Z Brassica rapa HOM05D007974 ORTHO05D010062 4.7e-19 98.2 105 48.6
FvH4_7g29100 Fragaria vesca HOM05D007974 ORTHO05D010062 6.2e-19 97.8 113 44.2
CARHR275850 Cardamine hirsuta HOM05D007974 ORTHO05D010062 1.1e-18 97.1 106 47.2
FAN03G1543 Fragaria x ananassa HOM05D007974 ORTHO05D010062 1.1e-18 97.1 116 44.8
Potri.015G142100 Populus trichocarpa HOM05D007974 ORTHO05D010062 3.1e-18 95.5 75 54.7
THA.LOC104820164 Tarenaya hassleriana HOM05D007974 ORTHO05D010062 1.2e-17 93.6 116 44.0
Gohir.D11G325151 Gossypium hirsutum HOM05D007974 ORTHO05D010062 7.5e-17 90.9 73 52.1
Actinidia03112 Actinidia chinensis HOM05D007974 ORTHO05D010062 1.6e-14 83.2 116 43.1
QL04p000796 Quercus lobata HOM05D000275 ORTHO05D000181 3.6e-11 72.0 104 39.4
Lsat_1_v5_gn_2_131621 Lactuca sativa HOM05D007974 ORTHO05D010062 8.1e-11 70.9 95 38.9
HanXRQChr01g0018461 Helianthus annuus HOM05D000275 ORTHO05D000181 1.5e-09 66.6 116 36.2
Lsat_1_v5_gn_1_89881 Lactuca sativa HOM05D000275 ORTHO05D000181 1.5e-09 66.6 106 37.7
vmacro22473 Vaccinium macrocarpon HOM05D000275 ORTHO05D000181 2.0e-09 66.2 111 35.1
Haze_03292 Corylus avellana HOM05D000275 ORTHO05D000181 2.6e-09 65.9 107 35.5
Cfa010681 Carpinus fangiana HOM05D000275 ORTHO05D000181 3.4e-09 65.5 107 36.4
Medtr7g073060 Medicago truncatula HOM05D000275 ORTHO05D000181 4.4e-09 65.1 115 31.3
CSS0001255 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D000181 5.8e-09 64.7 107 34.6
CiPaw.15G186600 Carya illinoinensis HOM05D000275 ORTHO05D000181 5.8e-09 64.7 102 38.2
SEGI_16300 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 1.3e-08 63.5 89 32.6
Gorai.008G229100 Gossypium raimondii HOM05D000275 ORTHO05D000181 2.2e-08 62.8 114 35.1
Sc07g0005920 Simmondsia chinensis HOM05D000275 ORTHO05D000181 2.2e-08 62.8 104 31.7
Actinidia31722 Actinidia chinensis HOM05D000275 ORTHO05D000181 2.9e-08 62.4 115 33.9
SEGI_03035 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 2.9e-08 62.4 126 31.0
CSS0044170 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D000181 6.4e-08 61.2 107 34.6
Peaxi162Scf00402g00945 Petunia axillaris HOM05D000275 ORTHO05D020304 6.4e-08 61.2 124 33.9
Gohir.D12G213500 Gossypium hirsutum HOM05D000275 ORTHO05D000181 8.3e-08 60.8 114 34.2
Rhsim07G0048700 Rhododendron simsii HOM05D000275 ORTHO05D000181 1.4e-07 60.1 116 31.0
TAR623G0763 Trochodendron aralioides HOM05D000275 ORTHO05D000181 1.9e-07 59.7 107 33.6
Ah.08g209490 Amaranthus hybridus HOM05D000275 ORTHO05D000181 2.4e-07 59.3 122 29.5
Dinv43951 Davidia involucrata HOM05D000275 ORTHO05D000181 2.4e-07 59.3 106 33.0
Medtr1g040335 Medicago truncatula HOM05D000275 ORTHO05D000181 2.4e-07 59.3 103 28.2
Hma1.2p1_0128F.1_g059960 Hydrangea macrophylla HOM05D000275 ORTHO05D000181 3.2e-07 58.9 110 33.6
AUR62029724 Chenopodium quinoa HOM05D000275 ORTHO05D000181 4.1e-07 58.5 105 31.4
Medtr7g073130 Medicago truncatula HOM05D000275 ORTHO05D000181 5.4e-07 58.2 117 28.2
Thecc.04G152500 Theobroma cacao HOM05D000275 ORTHO05D000181 5.4e-07 58.2 121 27.3
Medtr7g073030 Medicago truncatula HOM05D000275 ORTHO05D000181 7.1e-07 57.8 107 29.9
CANSAT11G2344 Cannabis sativa HOM05D000275 ORTHO05D000181 9.2e-07 57.4 103 32.0
CARHR285690 Cardamine hirsuta HOM05D000275 ORTHO05D000181 9.2e-07 57.4 110 30.9
Os01g0219500 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D049927 9.2e-07 57.4 92 30.4
GSVIVG01024563001 Vitis vinifera HOM05D000275 ORTHO05D000181 9.2e-07 57.4 105 30.5
AUR62029721 Chenopodium quinoa HOM05D000275 ORTHO05D000181 1.2e-06 57.0 105 32.4
Prupe.2G000900 Prunus persica HOM05D000275 ORTHO05D000181 1.2e-06 57.0 107 32.7
RcHm_v2.0_Chr3g0460581 Rosa chinensis HOM05D000275 ORTHO05D000181 1.2e-06 57.0 108 31.5
SEGI_27859 Sequoiadendron giganteum HOM05D000275 ORTHO05D010062 1.2e-06 57.0 88 31.8
SGA_v2.0_scaffold59G20687 Striga asiatica HOM05D000275 ORTHO05D000181 1.2e-06 57.0 89 30.3
arahy.Tifrunner.gnm1.ann1.EB1W4P Arachis hypogaea HOM05D000275 ORTHO05D000181 1.6e-06 56.6 105 32.4
Medtr7g072993 Medicago truncatula HOM05D000275 ORTHO05D000181 1.6e-06 56.6 107 28.0
VMungo1080G1094 Vigna mungo HOM05D000275 ORTHO05D000181 1.6e-06 56.6 103 32.0
Prupe.2G187100 Prunus persica HOM05D000275 ORTHO05D000181 2.1e-06 56.2 112 32.1
TWI53G1340 Tripterygium wilfordii HOM05D000275 ORTHO05D000181 2.1e-06 56.2 106 32.1
Migut.H00916 Erythranthe guttata HOM05D000275 ORTHO05D000181 2.7e-06 55.8 92 27.2
Medtr7g073100 Medicago truncatula HOM05D000275 ORTHO05D000181 3.5e-06 55.5 104 28.8
MSTRG.7190 Avicennia marina HOM05D000275 ORTHO05D003378 4.6e-06 55.1 115 28.7
Lalb_Chr20g0108251 Lupinus albus HOM05D000275 ORTHO05D000181 4.6e-06 55.1 120 29.2
MD00G1187200 Malus domestica HOM05D000275 ORTHO05D000181 4.6e-06 55.1 91 31.9
Medtr1g040330 Medicago truncatula HOM05D000275 ORTHO05D000181 4.6e-06 55.1 103 27.2
Migut.H00915 Erythranthe guttata HOM05D000275 ORTHO05D000181 6.0e-06 54.7 113 26.5
Potri.001G232700 Populus trichocarpa HOM05D000275 ORTHO05D000181 6.0e-06 54.7 91 31.9
Potri.001G232900 Populus trichocarpa HOM05D000275 ORTHO05D000181 6.0e-06 54.7 91 31.9


User provided reference genes

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