Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 2.6e-305 1051.2 527 100.0
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 9.8e-276 953.0 532 90.2
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 2.5e-271 938.3 533 89.1
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 3.0e-269 931.4 532 88.2
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 8.9e-253 876.7 534 83.1
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 8.6e-248 860.1 545 81.1
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 6.0e-241 837.4 544 77.8
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 9.6e-239 830.1 539 78.1
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 1.5e-236 822.8 539 78.5
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 1.9e-234 815.8 537 77.3
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 3.5e-233 811.6 537 76.7
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 1.1e-231 806.6 544 77.6
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 1.4e-213 746.5 543 69.4
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 6.7e-208 727.6 545 67.7
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 6.9e-205 717.6 533 68.1
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 1.2e-204 716.8 532 67.9
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 2.2e-203 712.6 549 64.8
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 3.2e-202 708.8 519 69.6
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 4.2e-202 708.4 531 69.3
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 2.1e-201 706.1 564 65.2
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 4.6e-201 704.9 549 65.4
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 6.1e-201 704.5 539 65.5
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 1.4e-200 703.4 547 65.3
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 1.4e-200 703.4 542 66.4
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 3.0e-200 702.2 546 65.9
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 6.7e-200 701.0 549 65.0
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 9.7e-199 697.2 503 68.8
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.7e-198 696.4 549 64.7
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 6.3e-198 694.5 532 66.2
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 8.2e-198 694.1 531 65.5
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 8.2e-198 694.1 532 66.2
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 1.1e-197 693.7 531 67.0
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 1.4e-197 693.3 540 66.1
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.4e-197 692.6 532 66.5
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 6.9e-197 691.0 531 65.3
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 9.1e-197 690.6 532 66.2
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 4.5e-196 688.3 545 64.6
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 9.4e-194 680.6 538 65.1
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 2.1e-193 679.5 547 63.8
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 3.6e-193 678.7 528 65.2
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 6.1e-193 677.9 549 63.4
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 1.8e-192 676.4 550 63.1
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 1.8e-189 666.4 536 62.5
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 9.1e-189 664.1 545 62.9
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.2e-188 663.7 544 62.1
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 2.6e-188 662.5 539 62.5
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 3.8e-187 658.7 546 61.7
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 3.2e-186 655.6 518 63.3
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 1.6e-185 653.3 494 67.2
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 2.2e-182 642.9 536 61.2
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 1.8e-181 639.8 535 60.4
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 2.0e-180 636.3 510 63.9
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 7.7e-180 634.4 518 60.8
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 2.9e-179 632.5 502 65.5
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 9.4e-178 627.5 540 61.5
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 1.2e-177 627.1 537 59.0
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 1.6e-177 626.7 536 59.7
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 1.0e-176 624.0 540 60.9
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 3.0e-176 622.5 554 59.0
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 7.5e-175 617.8 541 58.4
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 1.7e-174 616.7 541 59.9
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 2.2e-174 616.3 533 60.2
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 2.8e-174 615.9 507 61.9
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 1.8e-173 613.2 546 58.2
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 1.2e-172 610.5 556 57.2
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 2.7e-172 609.4 551 58.3
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 1.7e-171 606.7 541 57.1
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 8.5e-171 604.4 572 55.4
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 1.5e-170 603.6 545 57.2
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 5.5e-170 601.7 543 57.3
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 1.2e-169 600.5 543 56.9
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 1.2e-169 600.5 512 60.2
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 1.6e-169 600.1 548 59.1
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 3.6e-169 599.0 566 55.5
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 2.6e-167 592.8 544 57.2
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 3.4e-167 592.4 539 61.4
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 2.8e-166 589.3 544 56.8
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 1.4e-165 587.0 529 56.0
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 9.1e-165 584.3 540 56.5
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 1.6e-164 583.6 545 56.3
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 3.5e-164 582.4 523 57.4
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 1.7e-163 580.1 544 56.4
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 2.9e-163 579.3 547 56.7
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 2.5e-162 576.2 537 56.2
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 2.5e-162 576.2 685 48.2
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 4.2e-162 575.5 545 55.8
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 3.0e-160 569.3 543 55.4
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 3.4e-159 565.8 542 55.2
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 2.2e-158 563.1 546 55.1
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 6.3e-158 561.6 546 54.9
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 8.3e-158 561.2 543 55.1
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 8.3e-158 561.2 589 52.1
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 1.6e-156 557.0 540 55.9
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 1.0e-155 554.3 552 54.3
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 4.3e-154 548.9 471 59.7
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 4.0e-152 542.3 533 52.9
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 9.8e-151 537.7 528 54.2
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 8.3e-150 534.6 560 50.2
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 7.0e-149 531.6 542 53.3
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 3.0e-147 526.2 446 61.2
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 7.3e-146 521.5 414 64.5
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 1.2e-140 504.2 486 54.3
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 4.3e-138 495.7 701 45.5
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 3.2e-133 479.6 531 50.3
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 7.3e-130 468.4 339 70.8
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 1.8e-128 463.8 494 52.6
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 1.5e-119 434.1 387 58.4
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 4.0e-112 409.5 323 66.3
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 1.2e-108 397.9 385 56.1
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 1.9e-106 390.6 342 61.1
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 6.2e-105 385.6 329 64.1
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 3.1e-104 383.3 313 64.9
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 4.0e-104 382.9 370 56.5
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 5.7e-98 362.5 529 39.9
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 1.2e-92 344.7 530 40.4
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 2.7e-92 343.6 524 38.7
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 9.7e-90 335.1 540 37.2
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 3.8e-86 323.2 355 52.1
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 8.5e-86 322.0 337 53.7
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 1.8e-83 314.3 514 37.7
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 1.8e-83 314.3 338 49.7
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 8.2e-81 305.4 386 45.9
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 7.0e-64 249.2 148 79.7
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 3.0e-59 233.8 193 56.5
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 3.4e-58 230.3 168 68.5
Duzib248G1520 Durio zibethinus HOM05D004567 ORTHO05D005726 5.4e-56 223.0 134 76.9
Cfa022169 Carpinus fangiana HOM05D004567 ORTHO05D005726 9.1e-56 222.2 132 77.3
Oeu029992.1 Olea europaea HOM05D004567 ORTHO05D005726 1.2e-52 211.8 151 66.9
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 2.1e-52 211.1 171 54.4
unitig_44.g31559 Utricularia gibba HOM05D004567 ORTHO05D005726 6.8e-51 206.1 140 67.9
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 6.1e-44 183.0 498 30.3
ClCG10G008380 Citrullus lanatus HOM05D004567 ORTHO05D005726 4.0e-43 180.3 104 74.0
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 1.8e-40 171.4 190 47.9
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.3e-35 154.5 157 56.1
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 3.9e-30 137.1 129 48.8
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 5.4e-24 116.7 122 51.6
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 5.1e-22 110.2 99 55.6
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 2.5e-21 107.8 125 47.2
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 1.2e-20 105.5 104 51.9
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.6e-20 105.1 101 57.4
Rhsim06G0125400 Rhododendron simsii HOM05D004567 ORTHO05D005726 7.6e-18 96.3 53 75.5
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 2.9e-17 94.4 94 51.1
Rhsim06G0125600 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.1e-16 92.4 103 54.4
QL01p003984 Quercus lobata HOM05D004567 ORTHO05D000318 7.1e-16 89.7 63 65.1
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 1.9e-13 81.6 95 47.4
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 4.0e-11 73.9 85 49.4
TAR623G0420 Trochodendron aralioides HOM05D004567 ORTHO05D037809 5.8e-10 70.1 155 37.4
Sed0023875 Sechium edule HOM05D004567 ORTHO05D005726 6.4e-09 66.6 118 35.6
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 6.4e-09 66.6 83 38.6
Cre06.g258400 Chlamydomonas reinhardtii HOM05D004567 ORTHO05D005726 3.0e-06 57.8 126 27.8
arahy.Tifrunner.gnm1.ann1.74QZJ8 Arachis hypogaea HOM05D003351 ORTHO05D003806 6.6e-06 56.6 55 60.0


User provided reference genes

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