Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 3.9e-99 364.8 181 100.0
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 1.4e-88 329.7 181 92.3
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 3.2e-85 318.5 181 89.5
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 6.3e-81 304.3 181 86.2
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 3.1e-80 302.0 181 84.5
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 2.2e-78 295.8 181 82.9
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 5.5e-77 291.2 181 80.1
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 1.0e-75 287.0 181 80.7
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 1.5e-74 283.1 181 80.7
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 4.8e-73 278.1 181 77.9
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 4.8e-73 278.1 181 78.5
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 2.4e-72 275.8 181 75.7
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 2.4e-72 275.8 181 79.0
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 5.3e-72 274.6 181 78.5
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 5.3e-72 274.6 181 78.5
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 5.3e-72 274.6 181 78.5
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 9.1e-72 273.9 181 78.5
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 1.2e-71 273.5 181 79.0
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 1.5e-71 273.1 179 77.7
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 2.6e-71 272.3 181 77.3
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 2.2e-70 269.2 182 75.8
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 2.9e-70 268.9 181 75.7
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 2.9e-70 268.9 182 75.8
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 3.8e-70 268.5 184 76.1
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 3.8e-70 268.5 181 74.6
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 6.5e-70 267.7 180 73.9
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 1.1e-69 266.9 179 74.3
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 1.9e-69 266.2 181 75.1
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 2.5e-69 265.8 181 74.0
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 2.5e-69 265.8 181 74.6
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 3.2e-69 265.4 183 74.3
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 3.2e-69 265.4 181 75.1
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 4.2e-69 265.0 180 77.8
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 5.5e-69 264.6 181 74.6
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 7.2e-69 264.2 182 77.5
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 7.2e-69 264.2 179 74.3
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 1.2e-68 263.5 184 75.5
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 1.6e-68 263.1 181 72.9
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 1.6e-68 263.1 181 72.9
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 1.6e-68 263.1 180 75.0
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 2.7e-68 262.3 181 71.8
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 2.7e-68 262.3 180 72.8
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 3.6e-68 261.9 181 72.4
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 3.6e-68 261.9 181 72.4
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 4.7e-68 261.5 181 71.3
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 8.0e-68 260.8 168 76.2
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 1.0e-67 260.4 181 71.8
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.4e-67 260.0 181 71.8
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.4e-67 260.0 181 71.8
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.4e-67 260.0 168 76.8
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 1.4e-67 260.0 181 74.6
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 1.4e-67 260.0 181 72.4
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 1.8e-67 259.6 181 71.8
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 1.8e-67 259.6 181 73.5
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 2.3e-67 259.2 181 71.3
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 2.3e-67 259.2 167 77.8
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 3.0e-67 258.8 181 70.7
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 3.0e-67 258.8 181 71.3
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 3.9e-67 258.5 181 72.9
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 3.9e-67 258.5 168 75.6
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.9e-67 258.5 168 75.6
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 3.9e-67 258.5 181 74.0
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 5.2e-67 258.1 191 69.1
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 6.7e-67 257.7 181 71.8
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 6.7e-67 257.7 181 71.8
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.7e-67 257.7 210 66.7
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 6.7e-67 257.7 181 74.0
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 6.7e-67 257.7 179 73.2
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 8.8e-67 257.3 181 71.3
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 8.8e-67 257.3 181 74.0
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 1.1e-66 256.9 167 76.0
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.5e-66 256.5 181 70.7
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.0e-66 256.1 210 66.2
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.0e-66 256.1 210 66.2
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 2.0e-66 256.1 181 69.6
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 2.6e-66 255.8 181 70.2
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 4.4e-66 255.0 169 75.7
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 4.4e-66 255.0 181 71.3
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 4.4e-66 255.0 178 72.5
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 5.7e-66 254.6 177 74.0
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 7.4e-66 254.2 181 70.2
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 1.7e-65 253.1 205 66.3
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 3.7e-65 251.9 182 70.3
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 3.7e-65 251.9 182 70.3
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 4.8e-65 251.5 171 73.7
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 1.4e-64 250.0 178 70.8
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.4e-64 250.0 181 71.3
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 2.4e-64 249.2 184 68.5
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 3.1e-64 248.8 182 70.3
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 5.3e-64 248.1 181 71.8
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 7.0e-64 247.7 181 69.1
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 7.0e-64 247.7 168 74.4
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 9.1e-64 247.3 182 69.2
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 1.6e-63 246.5 217 63.6
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 2.0e-63 246.1 181 68.5
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 3.5e-63 245.4 179 68.7
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 1.0e-62 243.8 174 70.1
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 1.0e-62 243.8 174 70.1
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 2.9e-62 242.3 176 68.8
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 3.8e-62 241.9 178 67.4
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.1e-61 240.4 182 67.0
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 7.2e-61 237.7 185 68.6
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 7.2e-61 237.7 228 60.1
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 9.4e-61 237.3 182 68.1
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 8.0e-60 234.2 175 68.0
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 1.2e-58 230.3 175 65.1
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 7.5e-58 227.6 235 54.0
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.3e-57 226.9 139 79.9
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.8e-56 223.0 219 58.4
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 7.0e-56 221.1 181 59.7
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 4.5e-55 218.4 199 62.3
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 1.0e-54 217.2 273 48.7
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 1.9e-53 213.0 152 69.1
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 5.5e-53 211.5 120 84.2
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 8.0e-52 207.6 191 61.3
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 1.3e-46 190.3 182 59.9
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 6.6e-46 188.0 178 55.6
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 1.1e-45 187.2 113 77.0
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 2.1e-44 183.0 183 59.0
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 2.2e-41 172.9 113 69.0
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 1.5e-37 160.2 139 51.8
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 7.3e-37 157.9 117 67.5
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 7.3e-37 157.9 116 67.2
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 1.0e-35 154.1 117 66.7
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 5.2e-35 151.8 106 71.7
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 1.2e-34 150.6 119 64.7
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 4.4e-34 148.7 122 63.1
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 2.2e-33 146.4 135 48.1
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 1.6e-31 140.2 126 62.7
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 3.5e-31 139.0 120 59.2
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 9.5e-29 131.0 111 61.3
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 5.2e-27 125.2 108 60.2
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 6.8e-27 124.8 81 71.6
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 6.8e-27 124.8 81 71.6
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 3.7e-25 119.0 120 43.3
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 2.7e-23 112.8 63 88.9
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.9e-21 106.7 92 65.2
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.3e-21 105.9 113 52.2
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 3.3e-21 105.9 64 81.2
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 5.6e-21 105.1 110 39.1
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 1.2e-20 104.0 72 70.8
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 2.8e-20 102.8 61 80.3
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 8.1e-20 101.3 113 49.6
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 1.1e-19 100.9 104 41.3
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 3.4e-18 95.9 65 70.8
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 2.9e-17 92.8 70 54.3
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 3.2e-16 89.4 106 39.6
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 1.1e-13 80.9 136 33.1
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 1.5e-13 80.5 50 76.0
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.5e-13 79.7 104 48.1
Phvul.001G073900 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 1.6e-07 60.5 36 80.6
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 1.0e-06 57.8 32 87.5
QL04p024921 Quercus lobata HOM05D004886 ORTHO05D005868 5.1e-06 55.5 28 92.9


User provided reference genes

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