Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 2.2e-191 672.2 346 100.0
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 4.8e-154 548.1 352 76.1
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 2.4e-153 545.8 346 77.2
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 5.3e-153 544.7 351 74.9
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 4.3e-147 525.0 352 72.2
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 8.2e-146 520.8 351 71.2
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 3.1e-145 518.8 352 71.0
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 1.4e-142 510.0 350 71.1
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 8.5e-127 457.6 368 63.9
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 4.2e-118 428.7 353 58.9
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 1.1e-115 420.6 351 57.3
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 9.7e-115 417.5 352 56.8
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 9.7e-115 417.5 353 57.5
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 1.7e-114 416.8 355 56.6
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 2.8e-114 416.0 353 57.8
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 3.7e-114 415.6 352 57.1
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 6.3e-114 414.8 350 55.4
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 8.2e-114 414.5 352 57.1
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 3.1e-113 412.5 351 56.1
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.6e-112 410.2 353 55.5
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 4.5e-112 408.7 352 55.7
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 5.9e-112 408.3 361 57.1
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 2.9e-111 406.0 355 56.3
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 1.9e-110 403.3 351 55.0
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 1.9e-110 403.3 352 55.7
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 1.9e-110 403.3 351 53.6
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 5.5e-110 401.7 356 57.6
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 7.2e-110 401.4 348 54.0
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 9.4e-110 401.0 359 54.3
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 1.2e-109 400.6 352 56.5
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 1.0e-108 397.5 354 54.0
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 1.0e-108 397.5 352 55.1
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 1.4e-108 397.1 356 54.8
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 1.8e-108 396.7 346 53.2
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 2.3e-108 396.4 356 54.5
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 4.0e-108 395.6 375 52.5
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 4.4e-107 392.1 358 52.8
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 1.7e-106 390.2 352 56.0
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 1.7e-106 390.2 352 53.7
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 2.2e-106 389.8 377 52.3
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 3.7e-106 389.0 291 67.4
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 4.8e-106 388.7 352 52.6
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 3.1e-105 386.0 351 53.0
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 3.1e-105 386.0 358 52.5
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 7.0e-105 384.8 352 52.8
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 9.1e-105 384.4 354 54.0
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 3.5e-104 382.5 350 52.9
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 4.5e-104 382.1 352 54.5
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 4.5e-104 382.1 352 54.5
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 4.5e-104 382.1 328 56.4
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 4.5e-104 382.1 353 53.0
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 1.3e-103 380.6 348 52.9
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 1.7e-103 380.2 336 54.8
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 2.2e-103 379.8 349 52.4
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 3.8e-103 379.0 380 48.7
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 6.5e-103 378.3 351 53.0
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 8.5e-103 377.9 362 51.4
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 1.1e-102 377.5 353 53.5
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 1.5e-102 377.1 322 56.8
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 9.4e-102 374.4 352 52.0
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 3.0e-100 369.4 346 53.2
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 1.3e-98 364.0 353 53.3
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 1.7e-98 363.6 352 51.7
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 3.7e-98 362.5 352 50.3
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 6.3e-98 361.7 352 50.0
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 1.4e-97 360.5 346 50.3
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 1.8e-97 360.1 350 51.4
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 7.0e-97 358.2 352 52.3
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 7.0e-97 358.2 352 49.1
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 1.2e-96 357.5 342 50.3
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 3.5e-96 355.9 357 51.3
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 5.9e-96 355.1 360 50.3
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 3.8e-95 352.4 352 48.9
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 6.6e-95 351.7 348 50.6
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.5e-94 350.5 352 50.3
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 2.5e-94 349.7 336 50.6
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 1.6e-93 347.1 357 54.1
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 1.0e-92 344.4 350 49.7
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 2.3e-92 343.2 442 41.9
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 6.8e-92 341.7 317 53.9
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 1.2e-91 340.9 331 50.5
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 1.7e-90 337.0 363 47.9
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 6.3e-90 335.1 257 66.1
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 7.0e-89 331.6 369 46.1
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 2.4e-81 306.6 330 47.9
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 2.0e-80 303.5 351 48.4
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 6.6e-79 298.5 296 51.4
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 4.3e-78 295.8 269 52.8
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 9.5e-78 294.7 347 42.9
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.2e-75 287.7 367 42.5
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 7.5e-75 285.0 283 49.8
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.4e-68 264.2 215 56.7
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 3.1e-68 263.1 342 38.3
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 1.9e-65 253.8 372 37.4
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 5.4e-65 252.3 249 52.2
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 1.0e-63 248.1 348 37.4
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 2.1e-61 240.4 358 38.8
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 3.8e-58 229.6 339 35.4
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.4e-57 227.6 313 37.7
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 6.6e-47 192.2 284 41.2
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 4.3e-38 162.9 316 31.0
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 1.3e-29 134.8 327 30.0
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 4.8e-29 132.9 178 40.4
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 6.2e-29 132.5 340 29.4
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 1.1e-28 131.7 327 30.6
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 1.8e-28 131.0 360 26.7
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.8e-28 131.0 332 31.6
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 1.8e-28 131.0 332 31.6
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 2.4e-28 130.6 328 30.8
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 2.4e-28 130.6 328 30.5
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 2.4e-28 130.6 342 31.0
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 3.1e-28 130.2 341 30.2
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 5.3e-28 129.4 328 30.5
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 6.9e-28 129.0 334 30.8
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 9.0e-28 128.6 328 30.5
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 1.2e-27 128.3 334 28.7
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 1.2e-27 128.3 331 29.3
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 1.2e-27 128.3 360 27.5
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.5e-27 127.9 332 31.3
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 2.6e-27 127.1 333 29.1
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 2.6e-27 127.1 333 29.4
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 3.4e-27 126.7 330 29.7
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 5.8e-27 125.9 345 27.5
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 5.8e-27 125.9 328 30.5
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 1.3e-26 124.8 148 45.9
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.3e-26 124.8 332 28.3
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 2.9e-26 123.6 331 29.9
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 2.9e-26 123.6 331 29.9
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 2.9e-26 123.6 326 30.4
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 3.8e-26 123.2 335 29.3
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 3.8e-26 123.2 328 30.2
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 3.8e-26 123.2 331 29.6
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 4.9e-26 122.9 335 27.5
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 4.9e-26 122.9 320 30.3
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 8.4e-26 122.1 344 26.5
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 8.4e-26 122.1 344 26.5
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 8.4e-26 122.1 327 29.1
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 1.1e-25 121.7 331 29.6
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 1.1e-25 121.7 330 30.6
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 1.1e-25 121.7 331 30.2
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 1.1e-25 121.7 334 29.6
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 1.4e-25 121.3 335 27.5
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 1.4e-25 121.3 330 30.3
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 1.4e-25 121.3 331 29.6
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 1.4e-25 121.3 129 44.2
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 1.4e-25 121.3 331 30.5
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 2.5e-25 120.6 333 28.5
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 2.5e-25 120.6 330 29.1
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 7.1e-25 119.0 323 30.0
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 7.1e-25 119.0 330 29.1
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 9.3e-25 118.6 357 27.7
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 1.2e-24 118.2 338 26.9
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 1.6e-24 117.9 333 28.2
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 2.1e-24 117.5 340 27.1
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 2.7e-24 117.1 86 61.6
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 3.5e-24 116.7 331 29.9
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 4.6e-24 116.3 330 27.9
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 7.9e-24 115.5 326 26.7
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 8.7e-23 112.1 327 28.7
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 8.7e-23 112.1 335 25.7
Medtr5g036455 Medicago truncatula HOM05D001404 ORTHO05D009009 1.1e-22 111.7 66 74.2
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 9.7e-22 108.6 132 40.9
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 2.8e-21 107.1 330 25.2
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 6.3e-21 105.9 126 42.1
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 6.9e-20 102.4 112 48.2
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 4.5e-19 99.8 334 24.9
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 2.2e-18 97.4 330 26.4
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 8.5e-18 95.5 215 28.8
HanXRQChr17g0570121 Helianthus annuus HOM05D001404 ORTHO05D009009 7.4e-14 82.4 82 45.1
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 3.7e-13 80.1 254 29.1
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 8.2e-13 79.0 63 58.7
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 9.1e-12 75.5 172 27.9
Lsat_1_v5_gn_1_40080 Lactuca sativa HOM05D000207 ORTHO05D000191 5.9e-11 72.8 56 53.6
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 2.9e-10 70.5 89 42.7
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 1.2e-08 65.1 48 58.3
C06p36300 Brassica napus HOM05D001404 ORTHO05D009009 1.8e-07 61.2 46 63.0
Oeu048569.1 Olea europaea HOM05D000240 ORTHO05D002608 3.0e-07 60.5 38 71.1


User provided reference genes

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