Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17300 Trifolium pratense HOM05D004957 ORTHO05D006741 2.6e-43 178.3 91 100.0
TPR.G17296 Trifolium pratense HOM05D004957 ORTHO05D006741 1.8e-28 129.0 65 95.4
Ca_16691_v3 Cicer arietinum L. HOM05D004957 ORTHO05D006741 4.0e-28 127.9 70 82.9
TPR.G18771 Trifolium pratense HOM05D000600 ORTHO05D006741 4.0e-28 127.9 66 92.4
Medtr3g091140 Medicago truncatula HOM05D004957 ORTHO05D006741 1.3e-26 122.9 63 90.5
Glyma.04G237200 Glycine max HOM05D004957 ORTHO05D006741 1.2e-24 116.3 64 84.4
Psat5g077960 Pisum sativum HOM05D004957 ORTHO05D006741 1.6e-24 115.9 63 82.5
QL04p040536 Quercus lobata HOM05D004957 ORTHO05D006741 6.0e-24 114.0 66 78.8
Glyma.06G127000 Glycine max HOM05D004957 ORTHO05D006741 1.0e-23 113.2 65 80.0
Phvul.009G055100 Phaseolus vulgaris HOM05D004957 ORTHO05D006741 3.9e-23 111.3 63 79.4
arahy.Tifrunner.gnm1.ann1.4XHC1Q Arachis hypogaea HOM05D004957 ORTHO05D006741 5.1e-23 110.9 63 81.0
arahy.Tifrunner.gnm1.ann1.I9WDPE Arachis hypogaea HOM05D004957 ORTHO05D006741 6.7e-23 110.5 63 81.0
VMungo1309G2659 Vigna mungo HOM05D004957 ORTHO05D006741 1.9e-22 109.0 63 77.8
Thecc.10G094900 Theobroma cacao HOM05D004957 ORTHO05D006741 4.3e-22 107.8 63 76.2
TWI63G0166 Tripterygium wilfordii HOM05D004957 ORTHO05D006741 1.3e-21 106.3 63 73.0
Duzib128G0241 Durio zibethinus HOM05D004957 ORTHO05D006741 1.6e-21 105.9 63 74.6
Lalb_Chr08g0240391 Lupinus albus HOM05D004957 ORTHO05D006741 2.8e-21 105.1 68 77.9
Sed0021935 Sechium edule HOM05D004957 ORTHO05D006741 2.8e-21 105.1 63 77.8
COL.COLO4_08828 Corchorus olitorius HOM05D004957 ORTHO05D006741 3.7e-21 104.8 68 64.7
Cfa011211 Carpinus fangiana HOM05D004957 ORTHO05D006741 6.3e-21 104.0 63 74.6
MELO3C034035.2 Cucumis melo HOM05D004957 ORTHO05D006741 6.3e-21 104.0 71 70.4
CiPaw.13G035400 Carya illinoinensis HOM05D004957 ORTHO05D006741 1.4e-20 102.8 63 74.6
Prupe.2G205200 Prunus persica HOM05D004957 ORTHO05D006741 1.4e-20 102.8 63 69.8
DCAR_006375 Daucus carota HOM05D004957 ORTHO05D006741 2.4e-20 102.1 86 59.3
RcHm_v2.0_Chr1g0362021 Rosa chinensis HOM05D004957 ORTHO05D006741 2.4e-20 102.1 63 74.6
ClCG05G021540 Citrullus lanatus HOM05D004957 ORTHO05D006741 3.1e-20 101.7 72 66.7
Oeu026555.1 Olea europaea HOM05D004957 ORTHO05D006741 3.1e-20 101.7 72 66.7
CSS0009425 Camellia sinensis var. sinensis HOM05D004957 ORTHO05D006741 5.3e-20 100.9 63 71.4
CANSAT56G4280 Cannabis sativa HOM05D004957 ORTHO05D006741 5.3e-20 100.9 63 66.7
Gohir.D10G207400 Gossypium hirsutum HOM05D004957 ORTHO05D006741 5.3e-20 100.9 63 69.8
Gorai.011G233100 Gossypium raimondii HOM05D004957 ORTHO05D006741 5.3e-20 100.9 63 69.8
MD01G1099500 Malus domestica HOM05D004957 ORTHO05D006741 9.0e-20 100.1 63 71.4
MD07G1166400 Malus domestica HOM05D004957 ORTHO05D006741 9.0e-20 100.1 63 71.4
Manes.10G054300 Manihot esculenta HOM05D004957 ORTHO05D006741 9.0e-20 100.1 63 69.8
CsaV3_5G035710 Cucumis sativus L. HOM05D004957 ORTHO05D006741 1.2e-19 99.8 72 66.7
Gohir.A10G199300 Gossypium hirsutum HOM05D004957 ORTHO05D006741 1.5e-19 99.4 64 67.2
Migut.F00921 Erythranthe guttata HOM05D004957 ORTHO05D006741 2.0e-19 99.0 64 71.9
Dinv20853 Davidia involucrata HOM05D004957 ORTHO05D006741 2.6e-19 98.6 63 71.4
Sabra10G0180800 Salix brachista HOM05D004957 ORTHO05D006741 2.6e-19 98.6 75 58.7
CSS0009082 Camellia sinensis var. sinensis HOM05D004957 ORTHO05D006741 4.5e-19 97.8 63 69.8
Rhsim03G0109900 Rhododendron simsii HOM05D004957 ORTHO05D006741 4.5e-19 97.8 63 68.3
SGA_v2.0_scaffold13G06503 Striga asiatica HOM05D004957 ORTHO05D006741 4.5e-19 97.8 64 70.3
vmacro07214 Vaccinium macrocarpon HOM05D004957 ORTHO05D006741 4.5e-19 97.8 63 68.3
Actinidia18565 Actinidia chinensis HOM05D004957 ORTHO05D006741 5.9e-19 97.4 63 73.0
Hma1.2p1_0949F.1_g240570 Hydrangea macrophylla HOM05D004957 ORTHO05D006741 5.9e-19 97.4 63 69.8
Potri.010G233100 Populus trichocarpa HOM05D004957 ORTHO05D006741 1.0e-18 96.7 63 66.7
MSTRG.27517 Avicennia marina HOM05D004957 ORTHO05D006741 1.7e-18 95.9 63 68.3
FvH4_7g18320 Fragaria vesca HOM05D004957 ORTHO05D006741 2.2e-18 95.5 63 71.4
FAN06G1723 Fragaria x ananassa HOM05D004957 ORTHO05D006741 2.2e-18 95.5 63 71.4
FAN06G3957 Fragaria x ananassa HOM05D004957 ORTHO05D006741 2.2e-18 95.5 63 71.4
FAN10G2184 Fragaria x ananassa HOM05D004957 ORTHO05D006741 2.2e-18 95.5 63 71.4
FAN10G2400 Fragaria x ananassa HOM05D004957 ORTHO05D006741 2.2e-18 95.5 63 71.4
Ah.04g163600 Amaranthus hybridus HOM05D004957 ORTHO05D006741 2.9e-18 95.1 63 68.3
Cc02_g10340 Coffea canephora HOM05D004957 ORTHO05D006741 2.9e-18 95.1 63 68.3
Atru.chr12.947 Acer truncatum HOM05D004957 ORTHO05D006741 3.8e-18 94.7 56 75.0
Hund06755 Selenicereus undatus HOM05D004957 ORTHO05D006741 3.8e-18 94.7 64 65.6
GSVIVG01034681001 Vitis vinifera HOM05D004957 ORTHO05D006741 5.0e-18 94.4 69 65.2
Ciclev10031936m.g Citrus clementina HOM05D004957 ORTHO05D006741 8.5e-18 93.6 56 73.2
FAN03G2263 Fragaria x ananassa HOM05D004957 ORTHO05D006741 8.5e-18 93.6 63 69.8
TAR623G0871 Trochodendron aralioides HOM05D004957 ORTHO05D006741 1.1e-17 93.2 63 66.7
PSO339G2013 Papaver somniferum HOM05D004957 ORTHO05D006741 1.4e-17 92.8 63 68.3
SalBow4G0968 Salvia bowleyana HOM05D004957 ORTHO05D006741 3.2e-17 91.7 72 61.1
Sc09g0005630 Simmondsia chinensis HOM05D004957 ORTHO05D006741 3.2e-17 91.7 58 69.0
Peaxi162Scf00398g00615 Petunia axillaris HOM05D004957 ORTHO05D006741 4.2e-17 91.3 64 65.6
PSO063G1974 Papaver somniferum HOM05D004957 ORTHO05D006741 5.5e-17 90.9 63 66.7
CARHR161970 Cardamine hirsuta HOM05D004957 ORTHO05D006741 7.2e-17 90.5 63 65.1
AT3G52210 Arabidopsis thaliana HOM05D004957 ORTHO05D006741 1.6e-16 89.4 63 65.1
Lj1g0019138 Lotus japonicus HOM05D004957 ORTHO05D006741 1.6e-16 89.4 66 66.7
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 2.1e-16 89.0 84 54.8
PGR142G1077 Punica granatum HOM05D004957 ORTHO05D006741 2.1e-16 89.0 72 58.3
AL5G32800 Arabidopsis lyrata HOM05D004957 ORTHO05D006741 2.7e-16 88.6 63 63.5
Lj3A933T41 Lonicera japonica HOM05D004957 ORTHO05D006741 2.7e-16 88.6 56 71.4
Nn6g35094 Nelumbo nucifera HOM05D004957 ORTHO05D006741 2.7e-16 88.6 63 65.1
CAN.G135.55 Capsicum annuum HOM05D004957 ORTHO05D006741 3.6e-16 88.2 64 62.5
A09p45270 Brassica napus HOM05D004957 ORTHO05D006741 4.6e-16 87.8 68 57.4
C08p27450 Brassica napus HOM05D004957 ORTHO05D006741 6.1e-16 87.4 68 57.4
Carub.0005s1857 Capsella rubella HOM05D004957 ORTHO05D006741 6.1e-16 87.4 63 63.5
THA.LOC104806007 Tarenaya hassleriana HOM05D004957 ORTHO05D006741 6.1e-16 87.4 63 60.3
BcaC07g39591 Brassica carinata HOM05D004957 ORTHO05D006741 7.9e-16 87.0 63 61.9
BolC8t50362H Brassica oleracea HOM05D004957 ORTHO05D006741 7.9e-16 87.0 63 61.9
BraA09t39990Z Brassica rapa HOM05D004957 ORTHO05D006741 7.9e-16 87.0 63 61.9
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 1.0e-15 86.7 63 61.9
Solyc11g007700.2 Solanum lycopersicum HOM05D004957 ORTHO05D006741 1.8e-15 85.9 64 64.1
Sopen11g003560 Solanum pennellii HOM05D004957 ORTHO05D006741 1.8e-15 85.9 64 64.1
PGSC0003DMG400027352 Solanum tuberosum HOM05D004957 ORTHO05D006741 1.8e-15 85.9 64 64.1
Thhalv10010496m.g Eutrema salsugineum HOM05D004957 ORTHO05D006741 3.0e-15 85.1 63 63.5
Sp5g10060 Schrenkiella parvula HOM05D004957 ORTHO05D006741 3.0e-15 85.1 63 61.9
Eucgr.G02721 Eucalyptus grandis HOM05D004957 ORTHO05D006741 5.1e-15 84.3 63 57.1
ATR0820G057 Amborella trichopoda HOM05D004957 ORTHO05D006741 1.1e-14 83.2 66 63.6
unitig_736.g22532 Utricularia gibba HOM05D004957 ORTHO05D006741 1.9e-14 82.4 72 54.2
ECA238G1340 Erigeron canadensis HOM05D004957 ORTHO05D006741 5.7e-14 80.9 72 52.8
HanXRQChr14g0456261 Helianthus annuus HOM05D004957 ORTHO05D006741 9.7e-14 80.1 66 57.6
HPP92_011881 Vanilla planifolia HOM05D004957 ORTHO05D006741 6.3e-13 77.4 59 54.2
Os02g0780600 Oryza sativa ssp. japonica HOM05D004957 ORTHO05D006741 8.2e-13 77.0 63 54.0
HPP92_027323 Vanilla planifolia HOM05D004957 ORTHO05D006741 1.8e-12 75.9 59 52.5
Zm00001eb076770 Zea mays HOM05D004957 ORTHO05D006741 1.2e-11 73.2 63 50.8
MBI17_g12066_MAGBIO Magnolia biondii HOM05D004957 ORTHO05D006741 1.0e-10 70.1 44 72.7
CDE06G1534 Ceratophyllum demersum HOM05D004957 ORTHO05D006741 6.5e-10 67.4 54 53.7


User provided reference genes

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