Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17254 Trifolium pratense HOM05D007758 ORTHO05D009788 3.8e-305 1050.8 575 100.0
Ca_22029_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 3.6e-21 107.5 56 91.1
Ca_28157_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 4.0e-20 104.0 63 84.1
Medtr4g099120 Medicago truncatula HOM05D007758 ORTHO05D009788 2.0e-19 101.7 56 87.5
TPR.G18402 Trifolium pratense HOM05D002777 ORTHO05D001516 5.7e-19 100.1 123 39.8
Medtr3g053460 Medicago truncatula HOM05D007758 ORTHO05D009788 9.7e-19 99.4 56 85.7
Lj4g0024059 Lotus japonicus HOM05D007758 ORTHO05D009788 1.1e-17 95.9 50 92.0
Medtr2g103400 Medicago truncatula HOM05D002777 ORTHO05D001516 2.4e-17 94.7 124 37.1
Phvul.003G226800 Phaseolus vulgaris HOM05D007758 ORTHO05D009788 3.1e-17 94.4 55 81.8
Glyma.17G150000 Glycine max HOM05D007758 ORTHO05D009788 9.1e-17 92.8 58 81.0
Ca_03905_v3 Cicer arietinum L. HOM05D000421 ORTHO05D009788 1.6e-16 92.0 52 86.5
Lalb_Chr09g0329711 Lupinus albus HOM05D007758 ORTHO05D009788 1.6e-16 92.0 55 78.2
arahy.Tifrunner.gnm1.ann1.24R365 Arachis hypogaea HOM05D007758 ORTHO05D009788 2.0e-16 91.7 50 86.0
arahy.Tifrunner.gnm1.ann1.EY31BM Arachis hypogaea HOM05D007758 ORTHO05D009788 2.0e-16 91.7 50 86.0
Glyma.05G067900 Glycine max HOM05D007758 ORTHO05D009788 3.5e-16 90.9 55 80.0
Lsat_1_v5_gn_6_90760 Lactuca sativa HOM05D007758 ORTHO05D009788 1.0e-15 89.4 60 73.3
Psat4g076760 Pisum sativum HOM05D007758 ORTHO05D009788 1.0e-15 89.4 47 93.6
Medtr1g033680 Medicago truncatula HOM05D002777 ORTHO05D001516 3.8e-15 87.4 130 33.8
Manes.15G171100 Manihot esculenta HOM05D007758 ORTHO05D009788 6.5e-15 86.7 57 75.4
Psat5g032920 Pisum sativum HOM05D007807 ORTHO05D001516 8.5e-15 86.3 112 37.5
Medtr5g065250 Medicago truncatula HOM05D002777 ORTHO05D001516 1.9e-14 85.1 122 34.4
CANSAT21G1691 Cannabis sativa HOM05D007758 ORTHO05D009788 4.2e-14 84.0 59 71.2
Ciclev10023239m.g Citrus clementina HOM05D007758 ORTHO05D009788 9.4e-14 82.8 56 67.9
THA.LOC104814457 Tarenaya hassleriana HOM05D007758 ORTHO05D009788 1.2e-13 82.4 58 72.4
Hma1.2p1_1673F.1_g296900 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 1.6e-13 82.0 58 69.0
PSO782G2991 Papaver somniferum HOM05D007758 ORTHO05D009788 2.1e-13 81.6 56 71.4
Prupe.5G051100 Prunus persica HOM05D007758 ORTHO05D009788 2.1e-13 81.6 60 70.0
Oeu035101.1 Olea europaea HOM05D007758 ORTHO05D009788 3.6e-13 80.9 62 67.7
RcHm_v2.0_Chr6g0259711 Rosa chinensis HOM05D007758 ORTHO05D009788 3.6e-13 80.9 57 71.9
CSS0049692 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 4.7e-13 80.5 58 69.0
CiPaw.12G057000 Carya illinoinensis HOM05D007758 ORTHO05D009788 4.7e-13 80.5 60 66.7
TAR633G2270 Trochodendron aralioides HOM05D007758 ORTHO05D009788 4.7e-13 80.5 48 77.1
Nn1g00706 Nelumbo nucifera HOM05D007758 ORTHO05D009788 6.1e-13 80.1 57 71.9
CsaV3_3G049700 Cucumis sativus L. HOM05D007758 ORTHO05D009788 8.0e-13 79.7 73 63.0
Psat7g202320 Pisum sativum HOM05D007807 ORTHO05D001516 8.0e-13 79.7 123 29.3
ClCG09G012550 Citrullus lanatus HOM05D007758 ORTHO05D009788 1.0e-12 79.3 47 76.6
Cfa012357 Carpinus fangiana HOM05D007758 ORTHO05D009788 1.4e-12 79.0 60 65.0
Hma1.2p1_0414F.1_g147490 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 1.4e-12 79.0 49 71.4
DCAR_008312 Daucus carota HOM05D007758 ORTHO05D009788 1.8e-12 78.6 58 69.0
Sed0000899 Sechium edule HOM05D007758 ORTHO05D009788 1.8e-12 78.6 48 72.9
GSVIVG01013273001 Vitis vinifera HOM05D007758 ORTHO05D009788 1.8e-12 78.6 54 70.4
AL7G37620 Arabidopsis lyrata HOM05D007758 ORTHO05D009788 2.3e-12 78.2 58 67.2
MD04G1056100 Malus domestica HOM05D007758 ORTHO05D009788 3.0e-12 77.8 56 67.9
Psat0s287g0120 Pisum sativum HOM05D007807 ORTHO05D001516 3.0e-12 77.8 95 35.8
TAR629G0116 Trochodendron aralioides HOM05D007758 ORTHO05D009788 3.0e-12 77.8 54 66.7
C07p48590 Brassica napus HOM05D007758 ORTHO05D009788 5.2e-12 77.0 58 63.8
BolC7t45367H Brassica oleracea HOM05D007758 ORTHO05D009788 5.2e-12 77.0 58 63.8
Lj4g0027037 Lotus japonicus HOM05D002777 ORTHO05D001516 5.2e-12 77.0 104 32.7
CSS0001994 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 6.8e-12 76.6 47 74.5
MELO3C003346.2 Cucumis melo HOM05D007758 ORTHO05D009788 6.8e-12 76.6 47 74.5
Migut.E00814 Erythranthe guttata HOM05D007758 ORTHO05D009788 6.8e-12 76.6 54 68.5
TWI60G0956 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 6.8e-12 76.6 56 66.1
PGR042G0139 Punica granatum HOM05D007758 ORTHO05D009788 8.8e-12 76.3 59 66.1
vmacro01896 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 8.8e-12 76.3 93 35.5
BraA08t33271Z Brassica rapa HOM05D007758 ORTHO05D009788 1.2e-11 75.9 58 65.5
Gohir.D09G192200 Gossypium hirsutum HOM05D007758 ORTHO05D009788 1.2e-11 75.9 61 63.9
Gorai.006G215000 Gossypium raimondii HOM05D007758 ORTHO05D009788 1.2e-11 75.9 61 63.9
Atru.chr9.1149 Acer truncatum HOM05D007758 ORTHO05D009788 1.5e-11 75.5 49 67.3
COL.COLO4_06700 Corchorus olitorius HOM05D007758 ORTHO05D009788 1.5e-11 75.5 48 70.8
Thhalv10026742m.g Eutrema salsugineum HOM05D007758 ORTHO05D009788 2.0e-11 75.1 58 63.8
FAN13G2273 Fragaria x ananassa HOM05D007758 ORTHO05D009788 2.0e-11 75.1 53 69.8
FAN18G3236 Fragaria x ananassa HOM05D007758 ORTHO05D009788 2.0e-11 75.1 53 69.8
Lalb_Chr01g0012751 Lupinus albus HOM05D002777 ORTHO05D001516 2.0e-11 75.1 137 29.2
Medtr7g108760 Medicago truncatula HOM05D008558 ORTHO05D000006 2.0e-11 75.1 95 37.9
Medtr8g058470 Medicago truncatula HOM05D008558 ORTHO05D000006 2.0e-11 75.1 95 37.9
Peaxi162Scf00715g00026 Petunia axillaris HOM05D007758 ORTHO05D009788 2.0e-11 75.1 60 65.0
BcaB04g18382 Brassica carinata HOM05D007758 ORTHO05D009788 2.6e-11 74.7 59 62.7
Lj6g0021963 Lotus japonicus HOM05D002777 ORTHO05D001516 2.6e-11 74.7 81 38.3
Psat1g119760 Pisum sativum HOM05D007807 ORTHO05D001516 3.4e-11 74.3 103 35.0
BcaC07g38037 Brassica carinata HOM05D007758 ORTHO05D009788 4.4e-11 73.9 56 64.3
A08p12870 Brassica napus HOM05D007758 ORTHO05D009788 4.4e-11 73.9 56 64.3
BolC8t48433H Brassica oleracea HOM05D007758 ORTHO05D009788 4.4e-11 73.9 56 64.3
AT4G17085 Arabidopsis thaliana HOM05D007758 ORTHO05D009788 5.7e-11 73.6 58 63.8
Lj1g0014390 Lotus japonicus HOM05D002777 ORTHO05D001516 5.7e-11 73.6 118 31.4
Psat5g231960 Pisum sativum HOM05D007807 ORTHO05D001516 5.7e-11 73.6 100 36.0
A03p50300 Brassica napus HOM05D007758 ORTHO05D009788 7.5e-11 73.2 58 62.1
BraA03t14119Z Brassica rapa HOM05D007758 ORTHO05D009788 7.5e-11 73.2 58 62.1
Carub.0007s2429 Capsella rubella HOM05D007758 ORTHO05D009788 7.5e-11 73.2 58 63.8
CARHR223670 Cardamine hirsuta HOM05D007758 ORTHO05D009788 7.5e-11 73.2 58 63.8
Psat0s1058g0320 Pisum sativum HOM05D007807 ORTHO05D001516 9.8e-11 72.8 100 34.0
Psat0s3204g0040 Pisum sativum HOM05D007807 ORTHO05D000006 9.8e-11 72.8 100 36.0
Psat5g137320 Pisum sativum HOM05D007807 ORTHO05D001516 9.8e-11 72.8 100 34.0
Hund11300 Selenicereus undatus HOM05D007758 ORTHO05D009788 9.8e-11 72.8 48 68.8
Zm00001eb180740 Zea mays HOM05D007758 ORTHO05D009788 9.8e-11 72.8 51 64.7
Oeu017314.1 Olea europaea HOM05D007758 ORTHO05D009788 1.3e-10 72.4 55 65.5
Psat3g174320 Pisum sativum HOM05D007807 ORTHO05D001516 1.3e-10 72.4 100 36.0
Rhsim13G0125400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.3e-10 72.4 108 30.6
Gohir.A09G197600 Gossypium hirsutum HOM05D007758 ORTHO05D009788 1.7e-10 72.0 48 70.8
Cc08_g01520 Coffea canephora HOM05D007758 ORTHO05D009788 2.2e-10 71.6 55 65.5
Lj6g0012166 Lotus japonicus HOM05D002777 ORTHO05D001516 2.8e-10 71.2 98 32.7
Lj6g0023930 Lotus japonicus HOM05D002777 ORTHO05D001516 2.8e-10 71.2 127 34.6
Psat0s1204g0040 Pisum sativum HOM05D007807 ORTHO05D001516 2.8e-10 71.2 100 35.0
Psat0s3434g0160 Pisum sativum HOM05D007807 ORTHO05D001516 2.8e-10 71.2 100 33.0
RhsimUnG0200600 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.8e-10 71.2 108 30.6
BcaC06g33532 Brassica carinata HOM05D007758 ORTHO05D009788 3.7e-10 70.9 55 61.8
BcaNung04665 Brassica carinata HOM05D007758 ORTHO05D009788 3.7e-10 70.9 55 61.8
CiPaw.09G190000 Carya illinoinensis HOM05D007758 ORTHO05D009788 3.7e-10 70.9 60 60.0
Haze_08336 Corylus avellana HOM05D007758 ORTHO05D009788 3.7e-10 70.9 42 73.8
Psat3g168120 Pisum sativum HOM05D007807 ORTHO05D001516 3.7e-10 70.9 100 33.0
Psat7g033120 Pisum sativum HOM05D007807 ORTHO05D001516 3.7e-10 70.9 100 33.0
CAN.G1445.11 Capsicum annuum HOM05D007758 ORTHO05D009788 4.8e-10 70.5 59 59.3
Lj5g0019505 Lotus japonicus HOM05D002777 ORTHO05D001516 4.8e-10 70.5 123 30.9
Psat1g199520 Pisum sativum HOM05D007807 ORTHO05D001516 4.8e-10 70.5 100 35.0
Rhsim05G0075400 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.8e-10 70.5 108 29.6
PGSC0003DMG400001836 Solanum tuberosum HOM05D007758 ORTHO05D009788 4.8e-10 70.5 56 62.5
Thecc.03G237200 Theobroma cacao HOM05D007758 ORTHO05D009788 4.8e-10 70.5 61 59.0
CiPaw.14G095700 Carya illinoinensis HOM05D007758 ORTHO05D009788 6.3e-10 70.1 60 60.0
Lalb_Chr23g0272311 Lupinus albus HOM05D002777 ORTHO05D001516 6.3e-10 70.1 100 36.0
Psat3g118120 Pisum sativum HOM05D007807 ORTHO05D001516 6.3e-10 70.1 100 35.0
CiPaw.02G038300 Carya illinoinensis HOM05D007758 ORTHO05D009788 8.3e-10 69.7 60 60.0
Psat4g225800 Pisum sativum HOM05D007807 ORTHO05D001516 8.3e-10 69.7 72 40.3
CiPaw.10G048600 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.1e-09 69.3 60 60.0
Psat0ss2562g0120 Pisum sativum HOM05D007807 ORTHO05D001516 1.1e-09 69.3 100 32.0
CiPaw.14G095500 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.4e-09 68.9 60 58.3
Psat4g004920 Pisum sativum HOM05D007807 ORTHO05D001516 1.4e-09 68.9 100 35.0
Psat5g038560 Pisum sativum HOM05D007807 ORTHO05D001516 1.4e-09 68.9 121 31.4
Psat5g175040 Pisum sativum HOM05D007807 ORTHO05D001516 1.8e-09 68.6 100 33.0
Lj2g0018575 Lotus japonicus HOM05D002777 ORTHO05D001516 2.4e-09 68.2 141 31.9
Lj5g0007242 Lotus japonicus HOM05D002777 ORTHO05D001516 3.1e-09 67.8 97 30.9
Psat3g104680 Pisum sativum HOM05D007807 ORTHO05D001516 3.1e-09 67.8 100 34.0
Psat4g086840 Pisum sativum HOM05D007807 ORTHO05D001516 5.4e-09 67.0 67 40.3
Potri.003G085400 Populus trichocarpa HOM05D007758 ORTHO05D009788 5.4e-09 67.0 73 50.7
FAN08G1799 Fragaria x ananassa HOM05D007758 ORTHO05D009788 7.0e-09 66.6 53 67.9
Rhsim09G0140400 Rhododendron simsii HOM05D008219 ORTHO05D009356 7.0e-09 66.6 98 28.6
RhsimUnG0101100 Rhododendron simsii HOM05D008219 ORTHO05D009356 7.0e-09 66.6 108 28.7
Lj2g0011520 Lotus japonicus HOM05D002777 ORTHO05D001516 1.2e-08 65.9 93 33.3
Lj4g0011576 Lotus japonicus HOM05D002777 ORTHO05D001516 1.2e-08 65.9 123 33.3
Lj5g0007202 Lotus japonicus HOM05D002777 ORTHO05D001516 1.2e-08 65.9 129 31.8
Psat3g059880 Pisum sativum HOM05D007807 ORTHO05D001516 1.2e-08 65.9 68 36.8
Psat5g142480 Pisum sativum HOM05D007807 ORTHO05D001516 1.2e-08 65.9 70 37.1
Lj5g0022095 Lotus japonicus HOM05D002777 ORTHO05D001516 1.6e-08 65.5 97 34.0
Rhsim07G0230400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.6e-08 65.5 98 29.6
Lalb_Chr23g0273581 Lupinus albus HOM05D002777 ORTHO05D001516 2.0e-08 65.1 95 32.6
vmacro23283 Vaccinium macrocarpon HOM05D000163 ORTHO05D009356 2.0e-08 65.1 98 27.6
Glyma.13G027700 Glycine max HOM05D002777 ORTHO05D001516 2.7e-08 64.7 107 29.0
Lj3g0022675 Lotus japonicus HOM05D002777 ORTHO05D001516 2.7e-08 64.7 135 28.1
Lj6g0024174 Lotus japonicus HOM05D002777 ORTHO05D001516 2.7e-08 64.7 97 34.0
Psat5g029760 Pisum sativum HOM05D007807 ORTHO05D001516 2.7e-08 64.7 100 32.0
Lj5g0005169 Lotus japonicus HOM05D002777 ORTHO05D001516 4.5e-08 63.9 95 31.6
TPR.G25363 Trifolium pratense HOM05D007807 ORTHO05D001516 4.5e-08 63.9 92 30.4
Rhsim08G0178600 Rhododendron simsii HOM05D008219 ORTHO05D009356 5.9e-08 63.5 91 30.8
Lj2g0007640 Lotus japonicus HOM05D002777 ORTHO05D001516 7.7e-08 63.2 123 30.1
Lj5g0027109 Lotus japonicus HOM05D002777 ORTHO05D001516 7.7e-08 63.2 123 29.3
LjContig00081g0007509 Lotus japonicus HOM05D002777 ORTHO05D001516 7.7e-08 63.2 120 25.0
LjContig00155g0012392 Lotus japonicus HOM05D002777 ORTHO05D001516 1.0e-07 62.8 125 27.2
TPR.G14641 Trifolium pratense HOM05D002777 ORTHO05D001516 1.0e-07 62.8 98 28.6
Lj3g0009896 Lotus japonicus HOM05D002777 ORTHO05D001516 1.3e-07 62.4 93 32.3
Lj6g0003824 Lotus japonicus HOM05D002777 ORTHO05D001516 1.3e-07 62.4 118 28.0
Lj3g0016954 Lotus japonicus HOM05D002777 ORTHO05D001516 2.3e-07 61.6 123 26.8
RcHm_v2.0_Chr7g0205921 Rosa chinensis HOM05D007758 ORTHO05D009788 2.3e-07 61.6 59 59.3
Lj2g0005575 Lotus japonicus HOM05D002777 ORTHO05D001516 2.9e-07 61.2 127 29.1
Psat2g179480 Pisum sativum HOM05D016635 ORTHO05D001516 2.9e-07 61.2 104 27.9
Rhsim07G0052100 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.9e-07 61.2 57 38.6
TWI81G0786 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 3.8e-07 60.8 58 53.4
Medtr6g024400 Medicago truncatula HOM05D008558 ORTHO05D048850 5.0e-07 60.5 96 28.1
Rhsim05G0024200 Rhododendron simsii HOM05D008219 ORTHO05D009356 5.0e-07 60.5 94 28.7
vmacro12106 Vaccinium macrocarpon HOM05D000081 ORTHO05D009356 5.0e-07 60.5 98 25.5
Lj6g0028179 Lotus japonicus HOM05D002777 ORTHO05D001516 6.5e-07 60.1 118 28.8
Glyma.02G165100 Glycine max HOM05D002777 ORTHO05D001516 8.6e-07 59.7 93 31.2
Lj2g0025364 Lotus japonicus HOM05D002777 ORTHO05D001516 8.6e-07 59.7 98 29.6
Lj4g0007213 Lotus japonicus HOM05D002777 ORTHO05D001516 8.6e-07 59.7 125 27.2
Psat5g138320 Pisum sativum HOM05D002777 ORTHO05D001516 8.6e-07 59.7 63 31.7
Lj6g0012086 Lotus japonicus HOM05D002777 ORTHO05D001516 1.1e-06 59.3 101 26.7
Medtr0073s0040 Medicago truncatula HOM05D008558 ORTHO05D001516 1.1e-06 59.3 125 28.0
Medtr1148s0010 Medicago truncatula HOM05D008558 ORTHO05D001516 1.1e-06 59.3 121 28.1
ECA238G1199 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.5e-06 58.9 122 26.2
Lj1g0011597 Lotus japonicus HOM05D002777 ORTHO05D001516 1.9e-06 58.5 105 25.7
Medtr5g053650 Medicago truncatula HOM05D008558 ORTHO05D001516 2.5e-06 58.2 124 29.0
Psat7g119560 Pisum sativum HOM05D007807 ORTHO05D001516 3.2e-06 57.8 105 28.6
Sc21g0004040 Simmondsia chinensis HOM05D009209 ORTHO05D011705 3.2e-06 57.8 100 30.0
BolC7t45365H Brassica oleracea HOM05D007758 ORTHO05D009788 4.2e-06 57.4 37 67.6
Lj3g0021978 Lotus japonicus HOM05D002777 ORTHO05D001516 4.2e-06 57.4 125 25.6
Medtr5g048260 Medicago truncatula HOM05D008558 ORTHO05D011658 4.2e-06 57.4 61 41.0
Nitab4.5_0010949g0010 Nicotiana tabacum HOM05D007758 ORTHO05D009788 4.2e-06 57.4 36 69.4
Rhsim02G0045800 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.2e-06 57.4 57 35.1
Lj2g0011303 Lotus japonicus HOM05D002777 ORTHO05D001516 5.5e-06 57.0 93 28.0
Lj4g0026800 Lotus japonicus HOM05D002777 ORTHO05D001516 5.5e-06 57.0 103 32.0
Medtr2g060030 Medicago truncatula HOM05D008558 ORTHO05D011658 5.5e-06 57.0 97 28.9
Medtr3g048390 Medicago truncatula HOM05D008558 ORTHO05D011658 5.5e-06 57.0 79 35.4
Medtr6g048830 Medicago truncatula HOM05D008558 ORTHO05D001516 5.5e-06 57.0 113 25.7
Medtr8g045280 Medicago truncatula HOM05D008558 ORTHO05D001516 5.5e-06 57.0 135 29.6
Psat2g108040 Pisum sativum HOM05D007807 ORTHO05D001516 5.5e-06 57.0 85 30.6
MBI18_g23703_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 9.5e-06 56.2 61 37.7
Medtr6g054900 Medicago truncatula HOM05D008558 ORTHO05D001516 9.5e-06 56.2 96 27.1
Psat1g017800 Pisum sativum HOM05D007807 ORTHO05D001516 9.5e-06 56.2 72 34.7


User provided reference genes

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