Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 1.3e-146 523.1 273 100.0
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 1.3e-125 453.4 307 73.3
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 1.2e-123 446.8 302 74.5
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 1.1e-118 430.3 300 71.7
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 6.3e-117 424.5 316 66.1
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 1.1e-116 423.7 316 66.5
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 7.7e-115 417.5 313 65.8
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 6.5e-114 414.5 316 65.5
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 1.4e-113 413.3 316 64.6
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.9e-113 412.9 316 63.6
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 2.5e-113 412.5 306 66.0
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 4.2e-113 411.8 314 64.0
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 4.2e-113 411.8 316 65.2
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 9.4e-113 410.6 316 63.3
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 1.2e-112 410.2 316 63.9
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.2e-112 410.2 316 63.9
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 1.6e-112 409.8 316 63.9
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.7e-112 409.1 316 63.3
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 6.1e-112 407.9 316 63.3
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 7.9e-112 407.5 314 64.3
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 1.0e-111 407.1 315 63.2
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 1.8e-111 406.4 316 63.3
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 2.3e-111 406.0 316 63.3
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 3.0e-111 405.6 314 63.1
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 3.0e-111 405.6 316 63.9
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 3.0e-111 405.6 316 63.6
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.1e-111 404.8 314 63.4
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 1.1e-110 403.7 314 62.1
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 1.1e-110 403.7 316 63.0
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 2.0e-110 402.9 314 62.4
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 2.6e-110 402.5 316 63.3
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 2.6e-110 402.5 314 62.4
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 2.6e-110 402.5 316 63.9
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 4.4e-110 401.7 314 61.5
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 4.4e-110 401.7 316 63.3
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 5.7e-110 401.4 315 62.9
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 5.7e-110 401.4 316 63.0
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 7.4e-110 401.0 315 62.2
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 7.4e-110 401.0 314 63.4
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 9.7e-110 400.6 314 63.1
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 9.7e-110 400.6 314 61.5
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 1.3e-109 400.2 316 61.7
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 1.3e-109 400.2 316 62.7
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 1.7e-109 399.8 315 63.5
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 4.8e-109 398.3 314 63.1
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.8e-109 398.3 315 62.2
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 6.3e-109 397.9 313 62.0
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 6.3e-109 397.9 314 62.4
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 1.4e-108 396.7 315 61.6
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 1.4e-108 396.7 316 61.1
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 1.8e-108 396.4 314 62.1
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 2.4e-108 396.0 315 61.3
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 4.1e-108 395.2 316 61.4
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 5.3e-108 394.8 315 62.5
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 5.3e-108 394.8 314 61.5
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.2e-107 393.7 315 61.3
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 1.5e-107 393.3 315 61.3
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 5.9e-107 391.3 316 61.4
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 7.7e-107 391.0 316 61.7
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.0e-106 390.6 314 61.5
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 1.7e-106 389.8 315 60.6
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 2.2e-106 389.4 313 61.0
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 2.2e-106 389.4 313 61.0
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 2.9e-106 389.0 316 62.7
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 3.8e-106 388.7 313 61.7
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 3.8e-106 388.7 316 61.1
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 5.0e-106 388.3 298 62.8
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 6.5e-106 387.9 313 61.0
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 8.5e-106 387.5 314 61.1
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 1.1e-105 387.1 314 60.2
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 1.1e-105 387.1 314 60.2
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 1.9e-105 386.3 313 60.4
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.5e-105 386.0 309 61.2
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 3.2e-105 385.6 268 67.9
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 5.5e-105 384.8 315 59.7
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 7.2e-105 384.4 314 61.5
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.6e-104 383.3 316 60.1
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 2.1e-104 382.9 316 60.1
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 4.7e-104 381.7 317 57.7
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 4.7e-104 381.7 315 60.6
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 3.0e-103 379.0 302 61.9
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 5.2e-103 378.3 316 58.5
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 6.7e-103 377.9 320 57.8
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 1.5e-102 376.7 316 58.2
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 5.7e-102 374.8 314 60.2
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 2.2e-101 372.9 314 58.6
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 3.7e-101 372.1 316 57.6
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 6.3e-101 371.3 314 58.3
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 6.3e-101 371.3 317 59.0
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 8.2e-101 370.9 314 57.6
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 1.1e-100 370.5 306 60.1
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 2.4e-100 369.4 311 58.8
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 2.4e-100 369.4 314 58.3
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 3.1e-100 369.0 316 59.5
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 5.3e-100 368.2 311 57.6
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.6e-99 366.7 315 59.4
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 3.5e-99 365.5 318 56.9
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 3.5e-99 365.5 310 58.1
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 4.5e-99 365.2 310 59.0
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.0e-98 364.0 312 57.4
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.3e-98 363.6 310 58.1
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.7e-98 363.2 314 57.6
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 5.0e-98 361.7 311 57.2
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 6.5e-98 361.3 313 59.4
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 8.5e-98 360.9 313 56.5
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 4.2e-97 358.6 319 57.7
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 1.6e-96 356.7 311 56.6
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.6e-96 356.7 316 56.6
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 2.1e-96 356.3 320 55.9
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 3.6e-96 355.5 314 56.7
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 6.1e-96 354.8 319 56.7
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 6.7e-95 351.3 311 53.7
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 6.7e-95 351.3 311 55.6
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 2.6e-94 349.4 313 55.6
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 5.7e-94 348.2 314 54.8
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 1.3e-90 337.0 321 54.2
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 8.5e-90 334.3 314 54.8
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 8.5e-90 334.3 310 52.6
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 3.2e-89 332.4 313 54.3
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.6e-88 330.1 279 58.8
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.4e-87 327.0 302 54.3
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 1.5e-86 323.6 322 52.8
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 1.3e-85 320.5 328 49.7
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 2.8e-85 319.3 316 50.3
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 2.7e-83 312.8 302 53.3
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 7.2e-81 304.7 291 52.9
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.4e-79 300.4 314 49.4
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 2.3e-79 299.7 316 49.4
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.2e-78 297.4 259 58.3
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 5.6e-73 278.5 231 58.9
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 3.4e-70 269.2 137 90.5
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.2e-67 260.8 137 86.9
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 6.0e-67 258.5 314 46.8
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 2.3e-66 256.5 137 83.2
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 1.4e-63 247.3 138 83.3
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 5.2e-63 245.4 138 82.6
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 1.4e-60 237.3 133 82.7
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.5e-51 206.1 225 47.1
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 3.9e-50 202.6 136 67.6
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 6.2e-48 195.3 304 35.2
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 7.6e-46 188.3 342 31.6
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 2.2e-45 186.8 125 72.0
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 2.2e-37 160.2 110 70.0
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 8.4e-37 158.3 313 31.3
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.9e-36 157.1 229 41.5
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 1.2e-35 154.5 112 63.4
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 9.6e-33 144.8 106 60.4
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 1.3e-32 144.4 146 49.3
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 1.6e-32 144.1 96 67.7
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 4.5e-30 136.0 221 38.0
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 9.9e-30 134.8 136 53.7
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.2e-28 129.4 92 64.1
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.8e-23 114.0 66 78.8
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 6.0e-19 99.0 57 75.4
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 5.9e-06 55.8 43 62.8


User provided reference genes

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