Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 1.7e-91 339.3 171 100.0
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 3.4e-76 288.5 171 83.6
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 2.2e-67 259.2 173 75.1
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 4.9e-67 258.1 173 75.1
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 1.3e-64 250.0 174 73.0
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 1.3e-64 250.0 172 70.3
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 2.3e-61 239.2 172 68.6
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 2.2e-59 232.6 171 68.4
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 1.1e-58 230.3 173 68.8
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 2.1e-57 226.1 172 69.8
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 3.5e-57 225.3 175 66.9
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 1.3e-56 223.4 172 69.2
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 1.7e-56 223.0 175 68.0
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 3.0e-56 222.2 173 67.1
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 6.6e-56 221.1 171 66.7
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 2.5e-55 219.2 175 66.9
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 5.6e-55 218.0 173 65.9
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 8.9e-53 210.7 177 64.4
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 9.9e-52 207.2 173 61.8
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.3e-51 206.8 175 60.6
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 1.3e-51 206.8 178 61.8
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 1.7e-51 206.5 177 61.6
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 3.7e-51 205.3 176 62.5
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 1.1e-50 203.8 167 62.9
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 1.1e-50 203.8 167 62.9
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 2.4e-50 202.6 173 60.1
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 2.4e-50 202.6 176 60.8
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 3.2e-50 202.2 167 62.9
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 7.1e-50 201.1 171 62.6
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 1.2e-49 200.3 165 61.2
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 1.6e-49 199.9 177 60.5
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 6.0e-49 198.0 177 60.5
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 2.3e-48 196.1 177 58.2
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 3.9e-48 195.3 179 59.8
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 2.5e-47 192.6 172 59.9
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 2.5e-47 192.6 172 59.9
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 2.5e-47 192.6 174 59.8
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 3.3e-47 192.2 175 60.0
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 5.6e-47 191.4 172 59.9
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 7.3e-47 191.0 172 59.9
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 7.3e-47 191.0 177 55.9
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 9.6e-47 190.7 176 58.0
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 3.6e-46 188.7 177 56.5
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 4.7e-46 188.3 179 58.7
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 6.2e-46 188.0 176 56.2
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 1.1e-45 187.2 174 57.5
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 3.1e-45 185.7 168 58.3
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 2.6e-44 182.6 173 60.1
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 3.4e-44 182.2 181 56.9
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 2.9e-43 179.1 180 52.8
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 2.4e-42 176.0 175 52.6
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 3.2e-42 175.6 178 56.7
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 3.2e-42 175.6 166 57.2
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.6e-41 173.3 174 52.9
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 1.6e-41 173.3 179 54.7
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 2.7e-41 172.6 185 55.1
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 3.5e-41 172.2 190 50.0
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 4.6e-41 171.8 179 53.6
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 4.6e-41 171.8 182 51.6
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 6.0e-41 171.4 173 53.8
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 7.8e-41 171.0 177 52.5
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 7.8e-41 171.0 158 57.0
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 1.0e-40 170.6 175 51.4
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 1.3e-40 170.2 185 54.6
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 1.7e-40 169.9 168 53.0
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 8.7e-40 167.5 178 50.0
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 8.7e-40 167.5 175 53.1
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 1.5e-39 166.8 175 52.6
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 1.9e-39 166.4 169 53.8
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 2.5e-39 166.0 177 52.5
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 3.3e-39 165.6 177 51.4
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 7.3e-39 164.5 175 52.6
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 7.3e-39 164.5 177 53.7
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 7.3e-39 164.5 179 49.7
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 9.6e-39 164.1 180 52.8
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 9.6e-39 164.1 167 52.7
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 2.1e-38 162.9 168 53.0
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 2.1e-38 162.9 175 52.0
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 3.6e-38 162.2 176 50.0
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 1.4e-37 160.2 177 50.3
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 1.8e-37 159.8 176 46.6
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 1.8e-37 159.8 171 50.9
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 4.0e-37 158.7 178 50.0
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 5.3e-37 158.3 171 50.3
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 6.9e-37 157.9 164 49.4
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 2.6e-36 156.0 170 51.2
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 3.8e-35 152.1 171 49.7
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 4.9e-35 151.8 175 48.0
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 1.9e-34 149.8 181 45.9
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 1.2e-33 147.1 182 45.6
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 1.7e-32 143.3 125 63.2
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 3.0e-32 142.5 186 46.2
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 5.1e-32 141.7 178 47.8
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 8.7e-32 141.0 176 45.5
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 1.1e-31 140.6 176 47.7
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 1.9e-31 139.8 167 44.3
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 1.9e-31 139.8 167 44.3
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 1.9e-31 139.8 163 46.0
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 1.6e-30 136.7 163 47.2
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 1.6e-30 136.7 167 46.1
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 4.8e-30 135.2 163 46.0
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 4.8e-30 135.2 142 52.1
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 6.2e-30 134.8 163 46.0
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 8.1e-30 134.4 168 44.6
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 1.8e-29 133.3 169 46.7
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 2.4e-29 132.9 168 45.8
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 2.4e-29 132.9 175 44.0
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 4.0e-29 132.1 168 45.2
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 5.3e-29 131.7 159 48.4
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 6.9e-29 131.3 121 56.2
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 1.5e-28 130.2 164 46.3
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 1.5e-28 130.2 179 45.8
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 1.5e-28 130.2 162 45.1
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 2.6e-28 129.4 149 47.0
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 2.6e-28 129.4 169 44.4
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 2.6e-28 129.4 164 46.3
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 4.5e-28 128.6 154 47.4
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 1.3e-27 127.1 168 44.0
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 2.2e-27 126.3 162 44.4
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 2.2e-27 126.3 162 44.4
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 2.9e-27 125.9 168 42.3
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 4.9e-27 125.2 167 44.3
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 4.9e-27 125.2 165 44.2
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 4.9e-27 125.2 135 50.4
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 6.4e-27 124.8 175 42.9
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 8.4e-27 124.4 167 44.3
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 8.4e-27 124.4 162 43.8
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 8.4e-27 124.4 161 44.1
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 8.4e-27 124.4 174 43.7
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 5.4e-26 121.7 166 43.4
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 2.7e-25 119.4 174 42.5
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 4.6e-25 118.6 143 45.5
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 1.4e-21 107.1 102 57.8
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 1.4e-21 107.1 113 50.4
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.5e-20 103.6 95 55.8
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 4.2e-18 95.5 118 39.8
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 5.5e-18 95.1 184 39.1
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 1.0e-16 90.9 68 70.6
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 2.3e-16 89.7 168 37.5
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.5e-15 87.0 98 49.0
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 3.3e-15 85.9 170 35.3
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 2.1e-14 83.2 163 36.2
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 9.0e-13 77.8 192 31.8
Zm00001eb242880 Zea mays HOM05D005110 ORTHO05D006074 3.0e-08 62.8 205 26.8


User provided reference genes

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