Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17220 Trifolium pratense HOM05D005659 ORTHO05D007059 1.2e-76 289.7 138 100.0
Medtr4g052420 Medicago truncatula HOM05D005659 ORTHO05D007059 1.2e-71 273.1 137 92.0
Psat7g186640 Pisum sativum HOM05D005659 ORTHO05D007059 3.6e-68 261.5 137 89.8
Ca_26075_v3 Cicer arietinum L. HOM05D005659 ORTHO05D007059 4.6e-68 261.2 138 89.9
Lj3g0027363 Lotus japonicus HOM05D005659 ORTHO05D007059 3.3e-58 228.4 141 78.0
VMungo1127G0741 Vigna mungo HOM05D005659 ORTHO05D007059 1.3e-57 226.5 142 76.1
Glyma.12G092000 Glycine max HOM05D005659 ORTHO05D007059 3.7e-57 224.9 142 77.5
Lalb_Chr03g0028281 Lupinus albus HOM05D005659 ORTHO05D007059 6.3e-57 224.2 141 77.3
Phvul.011G096400 Phaseolus vulgaris HOM05D005659 ORTHO05D007059 1.1e-56 223.4 142 74.6
Glyma.11G181100 Glycine max HOM05D005659 ORTHO05D007059 1.8e-56 222.6 142 76.1
Gohir.A05G079200 Gossypium hirsutum HOM05D005659 ORTHO05D007059 2.2e-54 215.7 140 75.7
Gohir.D05G082100 Gossypium hirsutum HOM05D005659 ORTHO05D007059 2.2e-54 215.7 140 75.7
CANSAT54G0546 Cannabis sativa HOM05D005659 ORTHO05D007059 5.0e-54 214.5 149 73.2
Gorai.009G083700 Gossypium raimondii HOM05D005659 ORTHO05D007059 8.5e-54 213.8 140 75.0
BcaC07g42532 Brassica carinata HOM05D005659 ORTHO05D007059 1.1e-53 213.4 137 75.2
Prupe.6G137400 Prunus persica HOM05D005659 ORTHO05D007059 1.1e-53 213.4 140 74.3
Cpa.g.sc195.32 Carica papaya HOM05D005659 ORTHO05D007059 1.5e-53 213.0 132 78.0
Carub.0001s0773 Capsella rubella HOM05D005659 ORTHO05D007059 1.9e-53 212.6 144 74.3
AT1G08380 Arabidopsis thaliana HOM05D005659 ORTHO05D007059 2.5e-53 212.2 144 74.3
CAN.G919.41 Capsicum annuum HOM05D005659 ORTHO05D007059 5.5e-53 211.1 142 73.2
arahy.Tifrunner.gnm1.ann1.QDSR7W Arachis hypogaea HOM05D005659 ORTHO05D007059 9.4e-53 210.3 131 74.0
BolC8t52533H Brassica oleracea HOM05D005659 ORTHO05D007059 1.2e-52 209.9 146 71.9
A09p65930 Brassica napus HOM05D005659 ORTHO05D007059 2.1e-52 209.1 137 73.0
BraA09t41937Z Brassica rapa HOM05D005659 ORTHO05D007059 2.1e-52 209.1 137 73.0
Haze_23342 Corylus avellana HOM05D005659 ORTHO05D007059 2.1e-52 209.1 132 75.8
arahy.Tifrunner.gnm1.ann1.MVQ7LV Arachis hypogaea HOM05D005659 ORTHO05D007059 2.7e-52 208.8 131 74.0
A06p05400 Brassica napus HOM05D005659 ORTHO05D007059 3.6e-52 208.4 143 71.3
BraA06t23749Z Brassica rapa HOM05D005659 ORTHO05D007059 3.6e-52 208.4 143 71.3
Sp1g07030 Schrenkiella parvula HOM05D005659 ORTHO05D007059 4.7e-52 208.0 146 71.2
vmacro14338 Vaccinium macrocarpon HOM05D005659 ORTHO05D007059 4.7e-52 208.0 141 73.8
CsaV3_1G015100 Cucumis sativus L. HOM05D005659 ORTHO05D007059 6.1e-52 207.6 145 71.0
MD03G1150500 Malus domestica HOM05D005659 ORTHO05D007059 8.0e-52 207.2 143 70.6
TWI75G1160 Tripterygium wilfordii HOM05D005659 ORTHO05D007059 1.4e-51 206.5 121 82.6
Migut.D02409 Erythranthe guttata HOM05D005659 ORTHO05D007059 1.8e-51 206.1 118 83.1
BcaB03g13338 Brassica carinata HOM05D005659 ORTHO05D007059 2.3e-51 205.7 143 70.6
BcaB07g34086 Brassica carinata HOM05D005659 ORTHO05D007059 2.3e-51 205.7 146 71.2
BcaC07g41946 Brassica carinata HOM05D005659 ORTHO05D007059 2.3e-51 205.7 146 70.5
C05p06520 Brassica napus HOM05D005659 ORTHO05D007059 2.3e-51 205.7 146 71.2
C08p50030 Brassica napus HOM05D005659 ORTHO05D007059 2.3e-51 205.7 146 70.5
BolC5t29412H Brassica oleracea HOM05D005659 ORTHO05D007059 2.3e-51 205.7 146 71.2
Aa31sc785G10 Aethionema arabicum HOM05D005659 ORTHO05D007059 3.0e-51 205.3 138 71.0
CARHR008270 Cardamine hirsuta HOM05D005659 ORTHO05D007059 3.0e-51 205.3 143 71.3
RcHm_v2.0_Chr5g0046981 Rosa chinensis HOM05D005659 ORTHO05D007059 3.0e-51 205.3 141 71.6
Aqoxy4G02709 Aquilegia oxysepala HOM05D005659 ORTHO05D007059 3.9e-51 204.9 148 70.3
Cfa009983 Carpinus fangiana HOM05D005659 ORTHO05D007059 3.9e-51 204.9 153 67.3
unitig_0.g1472 Utricularia gibba HOM05D005659 ORTHO05D007059 3.9e-51 204.9 126 79.4
SalBow6G0820 Salvia bowleyana HOM05D005659 ORTHO05D007059 5.2e-51 204.5 148 70.3
Thecc.09G277800 Theobroma cacao HOM05D005659 ORTHO05D007059 5.2e-51 204.5 121 80.2
AL1G18790 Arabidopsis lyrata HOM05D005659 ORTHO05D007059 6.7e-51 204.1 117 82.1
PSO339G3866 Papaver somniferum HOM05D005659 ORTHO05D007059 6.7e-51 204.1 144 69.4
Sc12g0004680 Simmondsia chinensis HOM05D005659 ORTHO05D007059 6.7e-51 204.1 124 77.4
Solyc06g074200.4 Solanum lycopersicum HOM05D005659 ORTHO05D007059 6.7e-51 204.1 122 79.5
Sopen06g030620 Solanum pennellii HOM05D005659 ORTHO05D007059 6.7e-51 204.1 122 79.5
ECA236G2734 Erigeron canadensis HOM05D005659 ORTHO05D007059 8.8e-51 203.8 120 80.0
FAN11G1786 Fragaria x ananassa HOM05D005659 ORTHO05D007059 8.8e-51 203.8 145 71.0
FAN25G1572 Fragaria x ananassa HOM05D005659 ORTHO05D007059 8.8e-51 203.8 145 71.0
Gohir.D07G115000 Gossypium hirsutum HOM05D005659 ORTHO05D007059 8.8e-51 203.8 123 80.5
MSTRG.18774 Avicennia marina HOM05D005659 ORTHO05D007059 1.1e-50 203.4 145 71.0
Sed0025059 Sechium edule HOM05D005659 ORTHO05D007059 1.1e-50 203.4 136 71.3
EL10Ac4g08175 Beta vulgaris HOM05D005659 ORTHO05D007059 1.5e-50 203.0 150 68.7
PSO384G5049 Papaver somniferum HOM05D005659 ORTHO05D007059 1.5e-50 203.0 144 69.4
Nitab4.5_0006903g0010 Nicotiana tabacum HOM05D005659 ORTHO05D007059 2.0e-50 202.6 145 70.3
Oeu002356.1 Olea europaea HOM05D005659 ORTHO05D007059 2.0e-50 202.6 132 74.2
PGSC0003DMG400005890 Solanum tuberosum HOM05D005659 ORTHO05D007059 2.0e-50 202.6 122 78.7
THA.LOC104826438 Tarenaya hassleriana HOM05D005659 ORTHO05D007059 2.0e-50 202.6 139 69.8
A08p35240 Brassica napus HOM05D005659 ORTHO05D007059 2.6e-50 202.2 135 72.6
MD11G1169900 Malus domestica HOM05D005659 ORTHO05D007059 2.6e-50 202.2 145 70.3
FAN21G2850 Fragaria x ananassa HOM05D005659 ORTHO05D007059 3.3e-50 201.8 145 70.3
CiPaw.14G097600 Carya illinoinensis HOM05D005659 ORTHO05D007059 5.7e-50 201.1 153 66.7
Gorai.001G123200 Gossypium raimondii HOM05D005659 ORTHO05D007059 5.7e-50 201.1 147 70.7
FvH4_3g25770 Fragaria vesca HOM05D005659 ORTHO05D007059 7.4e-50 200.7 145 70.3
DCAR_012226 Daucus carota HOM05D005659 ORTHO05D007059 9.7e-50 200.3 152 68.4
FAN16G1033 Fragaria x ananassa HOM05D005659 ORTHO05D007059 1.3e-49 199.9 145 69.7
Peaxi162Scf00091g00713 Petunia axillaris HOM05D005659 ORTHO05D007059 1.3e-49 199.9 120 78.3
Sabra04G0134500 Salix brachista HOM05D005659 ORTHO05D007059 1.3e-49 199.9 120 80.0
Dinv22811 Davidia involucrata HOM05D005659 ORTHO05D007059 1.7e-49 199.5 123 77.2
Hma1.2p1_2164F.1_g315750 Hydrangea macrophylla HOM05D005659 ORTHO05D007059 1.7e-49 199.5 148 68.2
Ciclev10029515m.g Citrus clementina HOM05D005659 ORTHO05D007059 2.2e-49 199.1 147 68.7
MELO3C025587.2 Cucumis melo HOM05D005659 ORTHO05D007059 2.2e-49 199.1 118 78.0
Manes.04G000900 Manihot esculenta HOM05D005659 ORTHO05D007059 2.8e-49 198.7 153 65.4
Potri.004G199400 Populus trichocarpa HOM05D005659 ORTHO05D007059 2.8e-49 198.7 120 78.3
MBI17_g28186_MAGBIO Magnolia biondii HOM05D005659 ORTHO05D007059 8.2e-49 197.2 122 77.0
HanXRQChr04g0128561 Helianthus annuus HOM05D005659 ORTHO05D007059 1.1e-48 196.8 120 78.3
Sabra09G0125800 Salix brachista HOM05D005659 ORTHO05D007059 1.1e-48 196.8 121 79.3
GSVIVG01036077001 Vitis vinifera HOM05D005659 ORTHO05D007059 4.1e-48 194.9 152 65.8
Cc01_g08780 Coffea canephora HOM05D005659 ORTHO05D007059 5.3e-48 194.5 152 65.8
Potri.009G160800 Populus trichocarpa HOM05D005659 ORTHO05D007059 5.3e-48 194.5 121 76.9
PGR102G0055 Punica granatum HOM05D005659 ORTHO05D007059 9.1e-48 193.7 146 67.8
SGA_v2.0_scaffold7G03995 Striga asiatica HOM05D005659 ORTHO05D007059 1.2e-47 193.4 147 67.3
Atru.chr3.3161 Acer truncatum HOM05D005659 ORTHO05D007059 1.6e-47 193.0 144 66.7
Eucgr.B03824 Eucalyptus grandis HOM05D005659 ORTHO05D007059 1.6e-47 193.0 144 64.6
Duzib170G0332 Durio zibethinus HOM05D005659 ORTHO05D007059 2.6e-47 192.2 150 65.3
BraA08t35432Z Brassica rapa HOM05D005659 ORTHO05D007059 3.5e-47 191.8 135 71.1
CSS0045008 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 1.3e-46 189.9 136 69.1
CSS0022105 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 2.9e-46 188.7 123 74.0
EL10Ac4g08170 Beta vulgaris HOM05D005659 ORTHO05D007059 5.0e-46 188.0 118 76.3
CDE08G1285 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 1.1e-45 186.8 140 65.0
Actinidia37070 Actinidia chinensis HOM05D005659 ORTHO05D007059 1.9e-45 186.0 140 64.3
HPP92_009876 Vanilla planifolia HOM05D005659 ORTHO05D007059 4.2e-45 184.9 128 68.0
C08p03620 Brassica napus HOM05D005659 ORTHO05D007059 1.6e-44 183.0 116 75.9
CDE02G1582 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 2.7e-44 182.2 140 63.6
Os04g0414700 Oryza sativa ssp. japonica HOM05D005659 ORTHO05D007059 2.7e-44 182.2 137 65.7
Lsat_1_v5_gn_7_85921 Lactuca sativa HOM05D005659 ORTHO05D007059 8.0e-44 180.6 122 72.1
Actinidia35474 Actinidia chinensis HOM05D005659 ORTHO05D007059 4.0e-43 178.3 140 63.6
Zm00001eb083680 Zea mays HOM05D005659 ORTHO05D007059 8.8e-43 177.2 100 79.0
ATR0579G079 Amborella trichopoda HOM05D005659 ORTHO05D007059 8.3e-41 170.6 121 68.6
ClCG01G011760 Citrullus lanatus HOM05D005659 ORTHO05D007059 1.8e-40 169.5 86 86.0
SEGI_08129 Sequoiadendron giganteum HOM05D005659 ORTHO05D007059 4.1e-40 168.3 114 71.1
Pp3c15_16690 Physcomitrium patens HOM05D005659 ORTHO05D007059 7.0e-40 167.5 147 57.8
Nitab4.5_0000937g0110 Nicotiana tabacum HOM05D005659 ORTHO05D007059 5.9e-39 164.5 84 88.1
Mapoly0064s0077 Marchantia polymorpha HOM05D005659 ORTHO05D007059 7.7e-39 164.1 139 58.3
QL01p011787 Quercus lobata HOM05D005659 ORTHO05D007059 2.9e-38 162.2 116 69.8
Pp3c15_16700 Physcomitrium patens HOM05D005659 ORTHO05D007059 5.0e-38 161.4 140 56.4
SMO163G0051 Selaginella moellendorffii HOM05D005659 ORTHO05D007059 1.5e-37 159.8 91 79.1
Rhsim01G0203000 Rhododendron simsii HOM05D005659 ORTHO05D007059 1.2e-34 150.2 100 72.0
AUR62001528 Chenopodium quinoa HOM05D005659 ORTHO05D007059 3.4e-34 148.7 94 75.5
BcaB03g13340 Brassica carinata HOM05D005659 ORTHO05D007059 2.2e-33 146.0 120 63.3
Nn2g14238 Nelumbo nucifera HOM05D005659 ORTHO05D007059 9.1e-32 140.6 121 60.3
TAR633G2174 Trochodendron aralioides HOM05D005659 ORTHO05D007059 9.1e-32 140.6 120 65.0
Hund18778 Selenicereus undatus HOM05D005659 ORTHO05D007059 2.7e-31 139.0 121 59.5
unitig_88.g27645 Utricularia gibba HOM05D005659 ORTHO05D007059 1.7e-30 136.3 89 71.9
Ah.08g223250 Amaranthus hybridus HOM05D005659 ORTHO05D007059 5.5e-29 131.3 109 61.5
ATR0772G031 Amborella trichopoda HOM05D005659 ORTHO05D007059 6.1e-28 127.9 94 69.1
Thhalv10009047m.g Eutrema salsugineum HOM05D005659 ORTHO05D007059 3.2e-24 115.5 138 47.8
Nitab4.5_0005472g0080 Nicotiana tabacum HOM05D005659 ORTHO05D007059 6.6e-22 107.8 111 55.9
Cre07.g334550 Chlamydomonas reinhardtii HOM05D005659 ORTHO05D007059 1.2e-20 103.6 93 52.7
TAR623G1200 Trochodendron aralioides HOM05D005659 ORTHO05D007059 2.0e-18 96.3 91 59.3
MCO01G581 Micromonas commoda HOM05D005659 ORTHO05D007059 9.8e-18 94.0 129 40.3
Manes.11G164551 Manihot esculenta HOM05D005659 ORTHO05D007059 7.3e-13 77.8 83 48.2
MD11G1234000 Malus domestica HOM05D005659 ORTHO05D007059 2.2e-09 66.2 74 52.7
Peaxi162Scf00345g01024 Petunia axillaris HOM05D005659 ORTHO05D007059 3.7e-09 65.5 31 90.3
MD17G1209900 Malus domestica HOM05D005659 ORTHO05D007059 1.1e-08 63.9 68 50.0
Nitab4.5_0003068g0060 Nicotiana tabacum HOM05D005659 ORTHO05D007059 3.9e-06 55.5 82 46.3
Gohir.A07G111250 Gossypium hirsutum HOM05D005659 ORTHO05D007059 5.1e-06 55.1 70 51.4


User provided reference genes

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