Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17219 Trifolium pratense HOM05D004622 ORTHO05D005431 3.7e-138 495.0 267 100.0
Medtr4g052880 Medicago truncatula HOM05D004622 ORTHO05D005431 8.1e-69 264.6 256 60.5
Lalb_Chr03g0028141 Lupinus albus HOM05D004622 ORTHO05D005431 8.5e-26 121.7 272 39.3
Glyma.12G090100 Glycine max HOM05D004622 ORTHO05D005431 1.5e-22 110.9 229 38.0
CSS0048557 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 2.0e-22 110.5 248 39.5
Haze_23364 Corylus avellana HOM05D004622 ORTHO05D005431 1.7e-21 107.5 223 36.8
Duzib170G0788 Durio zibethinus HOM05D004622 ORTHO05D005431 2.2e-21 107.1 296 34.8
MD03G1147600 Malus domestica HOM05D004622 ORTHO05D005431 8.2e-21 105.1 272 33.5
MD11G1166300 Malus domestica HOM05D004622 ORTHO05D005431 8.2e-21 105.1 272 33.8
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 1.1e-20 104.8 216 40.3
Manes.04G003000 Manihot esculenta HOM05D004622 ORTHO05D005431 1.1e-20 104.8 265 36.2
DCAR_010339 Daucus carota HOM05D004622 ORTHO05D005431 1.8e-20 104.0 256 36.3
Lj3g0000197 Lotus japonicus HOM05D004622 ORTHO05D005431 1.8e-20 104.0 247 37.7
RcHm_v2.0_Chr5g0045661 Rosa chinensis HOM05D004622 ORTHO05D005431 2.4e-20 103.6 257 34.2
RcHm_v2.0_Chr5g0046341 Rosa chinensis HOM05D004622 ORTHO05D005431 2.4e-20 103.6 257 34.2
TAR636G1327 Trochodendron aralioides HOM05D004622 ORTHO05D005431 3.1e-20 103.2 256 37.1
Cfa010005 Carpinus fangiana HOM05D004622 ORTHO05D005431 5.3e-20 102.4 231 37.7
FAN11G1623 Fragaria x ananassa HOM05D004622 ORTHO05D005431 5.3e-20 102.4 258 33.7
Thecc.09G281500 Theobroma cacao HOM05D004622 ORTHO05D005431 7.0e-20 102.1 286 33.9
Oeu034007.1 Olea europaea HOM05D004622 ORTHO05D005431 1.2e-19 101.3 279 33.3
Glyma.12G185600 Glycine max HOM05D004622 ORTHO05D005431 3.5e-19 99.8 215 39.5
Prupe.6G132300 Prunus persica HOM05D004622 ORTHO05D005431 3.5e-19 99.8 258 32.9
Duzib168G0112 Durio zibethinus HOM05D004622 ORTHO05D005431 4.5e-19 99.4 280 36.1
Dinv22834 Davidia involucrata HOM05D000892 ORTHO05D000750 1.7e-18 97.4 219 35.2
Gohir.A07G110600 Gossypium hirsutum HOM05D004622 ORTHO05D005431 1.7e-18 97.4 271 35.1
Gohir.D07G114300 Gossypium hirsutum HOM05D004622 ORTHO05D005431 1.7e-18 97.4 263 35.7
Oeu035435.1 Olea europaea HOM05D004622 ORTHO05D005431 2.2e-18 97.1 258 32.9
FvH4_3g25120 Fragaria vesca HOM05D004622 ORTHO05D005431 3.8e-18 96.3 269 33.5
Lj3g0018609 Lotus japonicus HOM05D004622 ORTHO05D005431 3.8e-18 96.3 261 33.3
Gorai.001G122600 Gossypium raimondii HOM05D004622 ORTHO05D005431 5.0e-18 95.9 267 35.6
Sabra09G0127000 Salix brachista HOM05D004622 ORTHO05D005431 5.0e-18 95.9 259 35.1
ClCG01G012170 Citrullus lanatus HOM05D004622 ORTHO05D005431 6.5e-18 95.5 222 36.9
MSTRG.18765 Avicennia marina HOM05D004622 ORTHO05D005431 1.9e-17 94.0 263 34.2
Cpa.g.sc195.5 Carica papaya HOM05D004622 ORTHO05D005431 1.9e-17 94.0 234 35.0
Lj2C965T2 Lonicera japonica HOM05D004622 ORTHO05D005431 1.9e-17 94.0 268 33.6
Actinidia07251 Actinidia chinensis HOM05D000892 ORTHO05D005431 4.2e-17 92.8 229 35.8
CsaV3_1G015000 Cucumis sativus L. HOM05D004622 ORTHO05D005431 4.2e-17 92.8 253 34.0
CsaV3_1G015910 Cucumis sativus L. HOM05D004622 ORTHO05D005431 4.2e-17 92.8 253 34.0
Ca_01655_v3 Cicer arietinum L. HOM05D004622 ORTHO05D005431 5.5e-17 92.4 284 34.2
MELO3C004685.2 Cucumis melo HOM05D004622 ORTHO05D005431 5.5e-17 92.4 261 34.5
TWI79G1499 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 7.2e-17 92.0 242 37.2
Glyma.11G182500 Glycine max HOM05D004622 ORTHO05D005431 3.6e-16 89.7 248 33.5
VMungo1080G1565 Vigna mungo HOM05D004622 ORTHO05D005431 3.6e-16 89.7 215 37.7
SalBow6G5234 Salvia bowleyana HOM05D004622 ORTHO05D005431 6.1e-16 89.0 236 34.3
Solyc11g068530.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 6.1e-16 89.0 272 35.3
PGSC0003DMG400026354 Solanum tuberosum HOM05D004622 ORTHO05D005431 8.0e-16 88.6 286 35.7
TWI31G0739 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 8.0e-16 88.6 241 33.6
Phvul.005G123200 Phaseolus vulgaris HOM05D004622 ORTHO05D005431 1.0e-15 88.2 215 37.2
Peaxi162Scf00040g00012 Petunia axillaris HOM05D004622 ORTHO05D005431 1.4e-15 87.8 263 33.1
CiPaw.14G099300 Carya illinoinensis HOM05D004622 ORTHO05D005431 1.8e-15 87.4 250 31.6
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 2.3e-15 87.0 305 32.8
Gohir.D09G095666 Gossypium hirsutum HOM05D004622 ORTHO05D005431 2.3e-15 87.0 223 34.5
Rhsim01G0204900 Rhododendron simsii HOM05D004622 ORTHO05D005431 3.0e-15 86.7 241 34.4
Gohir.A09G096001 Gossypium hirsutum HOM05D004622 ORTHO05D005431 4.0e-15 86.3 223 34.1
Manes.11G162600 Manihot esculenta HOM05D004622 ORTHO05D005431 4.0e-15 86.3 277 32.9
CANSAT54G2229 Cannabis sativa HOM05D004622 ORTHO05D005431 6.8e-15 85.5 270 30.4
QL01p012122 Quercus lobata HOM05D004622 ORTHO05D005431 6.8e-15 85.5 241 32.4
Sopen11g027250 Solanum pennellii HOM05D004622 ORTHO05D005431 6.8e-15 85.5 278 37.1
TAR633G0983 Trochodendron aralioides HOM05D004622 ORTHO05D005431 6.8e-15 85.5 294 30.6
DCAR_012203 Daucus carota HOM05D004622 ORTHO05D005431 8.8e-15 85.1 274 32.8
unitig_0.g1476 Utricularia gibba HOM05D000020 ORTHO05D000543 1.2e-14 84.7 223 36.8
Potri.009G162800 Populus trichocarpa HOM05D004622 ORTHO05D005431 1.5e-14 84.3 258 33.7
CiPaw.13G134900 Carya illinoinensis HOM05D004622 ORTHO05D005431 2.0e-14 84.0 253 34.0
Medtr2g086590 Medicago truncatula HOM05D004622 ORTHO05D005431 2.0e-14 84.0 262 33.2
Ciclev10028879m.g Citrus clementina HOM05D004622 ORTHO05D005431 3.4e-14 83.2 246 31.3
ClCG02G022240 Citrullus lanatus HOM05D004622 ORTHO05D005431 4.4e-14 82.8 254 30.7
Nn2g14192 Nelumbo nucifera HOM05D004622 ORTHO05D005431 4.4e-14 82.8 278 30.9
Potri.004G201500 Populus trichocarpa HOM05D004622 ORTHO05D005431 7.5e-14 82.0 260 33.1
Solyc06g074270.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 1.3e-13 81.3 252 34.1
PSO339G0545 Papaver somniferum HOM05D004622 ORTHO05D005431 1.7e-13 80.9 263 31.6
Nitab4.5_0000755g0020 Nicotiana tabacum HOM05D004622 ORTHO05D005431 2.2e-13 80.5 295 28.5
PGSC0003DMG400005882 Solanum tuberosum HOM05D004622 ORTHO05D005431 2.2e-13 80.5 245 32.7
MSTRG.12372 Avicennia marina HOM05D004622 ORTHO05D005431 2.8e-13 80.1 308 29.9
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 3.7e-13 79.7 273 30.4
CSS0039489 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 4.8e-13 79.3 280 31.1
Nitab4.5_0006738g0040 Nicotiana tabacum HOM05D004622 ORTHO05D005431 4.8e-13 79.3 277 28.9
Sopen06g030720 Solanum pennellii HOM05D004622 ORTHO05D005431 4.8e-13 79.3 246 32.9
Aqoxy2G01109 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 6.3e-13 79.0 276 31.9
SGA_v2.0_scaffold295G47519 Striga asiatica HOM05D004622 ORTHO05D005431 8.3e-13 78.6 93 46.2
GSVIVG01036110001 Vitis vinifera HOM05D004622 ORTHO05D005431 1.1e-12 78.2 157 36.9
CAN.G1524.7 Capsicum annuum HOM05D004622 ORTHO05D005431 1.4e-12 77.8 282 35.1
CDE04G1878 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 1.4e-12 77.8 260 31.2
MELO3C014501.2 Cucumis melo HOM05D004622 ORTHO05D005431 1.4e-12 77.8 264 29.5
PGR102G1757 Punica granatum HOM05D004622 ORTHO05D005431 2.4e-12 77.0 266 29.7
TWI75G1018 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 2.4e-12 77.0 298 29.9
EL10Ac7g15833 Beta vulgaris HOM05D004622 ORTHO05D005431 5.4e-12 75.9 263 28.5
Cpa.g.sc195.4 Carica papaya HOM05D004622 ORTHO05D005431 5.4e-12 75.9 217 36.9
Sed0001344 Sechium edule HOM05D004622 ORTHO05D005431 5.4e-12 75.9 246 34.6
Actinidia35466 Actinidia chinensis HOM05D004622 ORTHO05D005431 7.0e-12 75.5 67 53.7
MSTRG.21036 Avicennia marina HOM05D004622 ORTHO05D005431 7.0e-12 75.5 272 28.3
Eucgr.B03842 Eucalyptus grandis HOM05D004622 ORTHO05D005431 9.1e-12 75.1 80 47.5
Sc21g0007040 Simmondsia chinensis HOM05D004622 ORTHO05D005431 2.0e-11 73.9 55 60.0
CsaV3_6G038370 Cucumis sativus L. HOM05D004622 ORTHO05D005431 2.7e-11 73.6 95 45.3
PSO384G0540 Papaver somniferum HOM05D004622 ORTHO05D005431 2.7e-11 73.6 263 28.9
MBI17_g08325_MAGBIO Magnolia biondii HOM05D004622 ORTHO05D005431 4.5e-11 72.8 289 30.8
arahy.Tifrunner.gnm1.ann1.72VZ3I Arachis hypogaea HOM05D004622 ORTHO05D005431 5.9e-11 72.4 216 30.6
HanXRQChr11g0324161 Helianthus annuus HOM05D004622 ORTHO05D005431 5.9e-11 72.4 70 51.4
Migut.N02485 Erythranthe guttata HOM05D004622 ORTHO05D005431 1.0e-10 71.6 249 33.3
ATR0820G124 Amborella trichopoda HOM05D004622 ORTHO05D005431 1.3e-10 71.2 79 44.3
PSO801G0264 Papaver somniferum HOM05D004622 ORTHO05D005431 2.2e-10 70.5 275 29.8
HPP92_009743 Vanilla planifolia HOM05D004622 ORTHO05D005431 2.2e-10 70.5 65 50.8
Nitab4.5_0001216g0120 Nicotiana tabacum HOM05D004622 ORTHO05D005431 2.9e-10 70.1 58 58.6
Nitab4.5_0003661g0010 Nicotiana tabacum HOM05D004622 ORTHO05D005431 2.9e-10 70.1 58 58.6
CAN.G919.33 Capsicum annuum HOM05D004622 ORTHO05D005431 3.8e-10 69.7 239 32.6
Atru.chr3.3214 Acer truncatum HOM05D004622 ORTHO05D005431 6.5e-10 68.9 78 46.2
SGA_v2.0_scaffold177G39416 Striga asiatica HOM05D004622 ORTHO05D005431 8.5e-10 68.6 58 51.7
TPR.G4535 Trifolium pratense HOM05D004622 ORTHO05D005431 1.1e-09 68.2 265 30.9
HPP92_006359 Vanilla planifolia HOM05D004622 ORTHO05D005431 1.1e-09 68.2 228 30.3
SGA_v2.0_scaffold22G09855 Striga asiatica HOM05D004622 ORTHO05D005431 2.5e-09 67.0 218 31.2
Migut.D02437 Erythranthe guttata HOM05D004622 ORTHO05D005431 5.5e-09 65.9 236 28.4
Lsat_1_v5_gn_2_59400 Lactuca sativa HOM05D004622 ORTHO05D005431 5.5e-09 65.9 221 30.3
FAN09G4667 Fragaria x ananassa HOM05D006966 ORTHO05D008111 1.6e-08 64.3 98 38.8
Psat5g258080 Pisum sativum HOM05D004622 ORTHO05D005431 1.6e-08 64.3 219 32.4
HPP92_003213 Vanilla planifolia HOM05D004622 ORTHO05D005431 2.7e-08 63.5 85 41.2
Rhsim13G0112300 Rhododendron simsii HOM05D004622 ORTHO05D005431 3.6e-08 63.2 196 35.2
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 4.7e-08 62.8 67 50.7
FAN14G0100 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.7e-08 62.8 106 36.8
FAN14G4059 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.7e-08 62.8 106 36.8
FAN21G1025 Fragaria x ananassa HOM05D004622 ORTHO05D005431 4.7e-08 62.8 225 30.2
Zm00001eb092610 Zea mays HOM05D004622 ORTHO05D005431 4.7e-08 62.8 258 30.6
Aqoxy4G02755 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 1.0e-07 61.6 275 28.7
FAN05G0025 Fragaria x ananassa HOM05D006966 ORTHO05D008111 1.0e-07 61.6 106 36.8
FAN05G1324 Fragaria x ananassa HOM05D006966 ORTHO05D008111 1.0e-07 61.6 106 36.8
FAN05G1352 Fragaria x ananassa HOM05D006966 ORTHO05D008111 1.0e-07 61.6 106 36.8
Aqoxy4G02752 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 1.4e-07 61.2 234 29.1
FvH4_6g05230 Fragaria vesca HOM05D006966 ORTHO05D008111 1.4e-07 61.2 106 36.8
Os02g0534000 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 1.8e-07 60.8 61 45.9
RcHm_v2.0_Chr3g0453941 Rosa chinensis HOM05D006966 ORTHO05D008111 2.3e-07 60.5 108 37.0
FAN25G2155 Fragaria x ananassa HOM05D004622 ORTHO05D005431 3.0e-07 60.1 223 30.0
Lsat_1_v5_gn_1_59220 Lactuca sativa HOM05D004622 ORTHO05D005431 3.0e-07 60.1 99 43.4
Lsat_1_v5_gn_6_38921 Lactuca sativa HOM05D000892 ORTHO05D000750 3.0e-07 60.1 66 51.5
Os12g0155100 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 4.0e-07 59.7 232 28.4
Cc02_g32560 Coffea canephora HOM05D006966 ORTHO05D008111 5.2e-07 59.3 72 37.5
SalBow3G2592 Salvia bowleyana HOM05D004622 ORTHO05D005431 6.8e-07 58.9 84 40.5
unitig_699.g19154 Utricularia gibba HOM05D004622 ORTHO05D005431 6.8e-07 58.9 241 31.5
unitig_27.g25015 Utricularia gibba HOM05D004622 ORTHO05D005431 8.8e-07 58.5 270 27.0
DCAR_006166 Daucus carota HOM05D004622 ORTHO05D005431 1.2e-06 58.2 68 42.6
PGSC0003DMG400013130 Solanum tuberosum HOM05D001105 ORTHO05D003643 1.2e-06 58.2 84 41.7
DCAR_000195 Daucus carota HOM05D004622 ORTHO05D005431 1.5e-06 57.8 153 30.7
HanXRQChr11g0346861 Helianthus annuus HOM05D004622 ORTHO05D005431 2.6e-06 57.0 72 44.4
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 3.4e-06 56.6 85 36.5
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 5.7e-06 55.8 109 33.9
Ca_09380_v3 Cicer arietinum L. HOM05D006966 ORTHO05D008111 7.5e-06 55.5 65 41.5
Os11g0153500 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 7.5e-06 55.5 51 52.9
Psat3g009600 Pisum sativum HOM05D006966 ORTHO05D008111 9.8e-06 55.1 152 31.6


User provided reference genes

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