Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 3.9e-171 604.7 315 100.0
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 1.1e-138 496.9 324 82.1
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 1.4e-136 490.0 323 81.1
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 3.2e-125 452.2 300 80.7
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 2.3e-123 446.0 320 72.8
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 2.1e-116 422.9 313 70.3
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 1.4e-107 393.7 320 66.6
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 1.3e-105 387.1 330 64.5
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 3.3e-101 372.5 330 62.4
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 6.8e-99 364.8 314 60.5
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 7.5e-98 361.3 316 59.8
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 3.7e-97 359.0 319 59.2
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 3.7e-97 359.0 319 61.8
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 4.1e-96 355.5 320 58.8
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 9.2e-96 354.4 320 58.8
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 9.2e-96 354.4 320 58.4
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 1.6e-95 353.6 321 57.9
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 7.8e-95 351.3 314 59.6
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 1.0e-94 350.9 313 60.4
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 8.6e-94 347.8 314 58.9
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 1.1e-93 347.4 307 58.6
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 3.3e-93 345.9 315 58.4
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 3.1e-91 339.3 308 59.4
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 6.8e-91 338.2 318 58.5
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 8.9e-91 337.8 287 60.3
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 8.9e-91 337.8 261 62.8
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 2.6e-90 336.3 319 57.1
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 2.2e-89 333.2 320 57.2
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 4.9e-89 332.0 315 56.8
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 4.1e-88 328.9 319 55.5
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 4.1e-88 328.9 294 58.5
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 3.5e-87 325.9 300 59.3
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 4.6e-87 325.5 287 59.6
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 6.0e-87 325.1 313 54.0
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 7.8e-87 324.7 297 58.6
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 1.7e-86 323.6 265 61.5
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 3.9e-86 322.4 268 61.2
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 3.9e-86 322.4 272 61.0
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 6.6e-86 321.6 262 61.8
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 1.1e-85 320.9 268 60.8
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 1.9e-85 320.1 267 62.2
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 2.5e-85 319.7 270 60.7
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 2.5e-85 319.7 289 61.6
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 3.3e-85 319.3 268 62.3
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 3.3e-85 319.3 289 61.2
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 7.3e-85 318.2 266 62.4
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 3.6e-84 315.8 270 60.4
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 3.6e-84 315.8 261 60.5
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 4.7e-84 315.5 317 53.3
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 8.1e-84 314.7 264 61.4
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 8.1e-84 314.7 267 61.0
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 1.1e-83 314.3 317 53.3
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 6.8e-83 311.6 326 55.8
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 4.4e-82 308.9 269 60.2
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 5.8e-82 308.5 259 59.8
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 5.8e-82 308.5 269 58.4
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 7.6e-82 308.1 291 58.1
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 1.3e-81 307.4 265 59.2
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 1.3e-81 307.4 324 52.8
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 1.7e-81 307.0 262 59.9
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 2.2e-81 306.6 291 57.7
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 4.9e-81 305.4 323 53.6
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 2.1e-79 300.1 268 57.8
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 3.5e-79 299.3 292 56.2
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 3.9e-78 295.8 279 54.8
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 3.9e-78 295.8 318 52.8
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 4.3e-77 292.4 260 58.5
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 4.3e-77 292.4 291 55.7
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 4.7e-76 288.9 312 52.2
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 4.0e-75 285.8 270 55.9
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 5.2e-75 285.4 310 52.6
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 9.0e-75 284.6 333 48.3
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 2.0e-74 283.5 289 55.0
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 4.4e-74 282.3 258 57.0
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 2.2e-73 280.0 258 57.0
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 6.4e-73 278.5 233 65.7
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 3.9e-70 269.2 290 52.1
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 3.3e-69 266.2 315 50.2
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 1.6e-68 263.8 423 39.2
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 1.4e-67 260.8 285 50.2
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 1.2e-66 257.7 298 49.3
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 3.4e-66 256.1 293 47.8
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 1.3e-65 254.2 263 49.0
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 5.4e-64 248.8 261 48.7
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 9.3e-64 248.1 263 49.8
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 1.0e-62 244.6 315 47.9
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 3.3e-61 239.6 263 50.6
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 7.4e-61 238.4 277 47.3
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 3.1e-59 233.0 229 55.0
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 5.3e-59 232.3 261 51.0
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 6.9e-59 231.9 151 74.8
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 2.6e-58 229.9 261 49.8
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.7e-57 227.3 261 49.0
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 2.4e-56 223.4 199 55.8
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 1.2e-55 221.1 155 71.6
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 1.6e-52 210.7 253 46.2
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 2.1e-52 210.3 150 70.0
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 1.2e-50 204.5 260 45.0
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.6e-50 203.4 133 73.7
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 1.0e-49 201.4 155 67.1
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 2.9e-49 199.9 199 54.3
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 5.7e-45 185.7 178 56.7
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 1.6e-44 184.1 282 44.0
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 3.7e-44 183.0 264 43.2
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 1.1e-43 181.4 256 42.6
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 6.1e-39 165.6 214 44.9
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 8.8e-38 161.8 267 36.3
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 7.4e-37 158.7 98 75.5
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 7.4e-37 158.7 170 48.8
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 2.0e-34 150.6 98 72.4
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 1.1e-32 144.8 137 51.8
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 4.2e-32 142.9 88 76.1
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 4.2e-32 142.9 139 54.7
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 2.7e-31 140.2 79 83.5
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 3.6e-31 139.8 106 66.0
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 8.8e-30 135.2 133 54.1
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 6.3e-28 129.0 192 44.3
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 1.1e-19 101.7 72 69.4
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.0e-18 97.4 139 42.4
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 1.5e-16 91.3 81 61.7
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 3.6e-15 86.7 79 60.8
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 2.3e-14 84.0 112 43.8
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 1.3e-12 78.2 53 71.7
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 1.4e-11 74.7 67 59.7
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 1.8e-11 74.3 170 30.6
arahy.Tifrunner.gnm1.ann1.QCQ2D8 Arachis hypogaea HOM05D005386 ORTHO05D006981 1.0e-09 68.6 49 67.3
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 1.0e-09 68.6 57 64.9
MD09G1069600 Malus domestica HOM05D005386 ORTHO05D006981 1.7e-09 67.8 96 44.8
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 3.8e-09 66.6 88 37.5
arahy.Tifrunner.gnm1.ann1.YZK62K Arachis hypogaea HOM05D005386 ORTHO05D006981 6.5e-09 65.9 64 54.7
arahy.Tifrunner.gnm1.ann1.V0D9HX Arachis hypogaea HOM05D005386 ORTHO05D084459 1.1e-08 65.1 60 56.7
Ciclev10029903m.g Citrus clementina HOM05D005386 ORTHO05D006981 3.2e-08 63.5 52 61.5
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 4.7e-07 59.7 59 47.5
arahy.Tifrunner.gnm1.ann1.M13D0Y Arachis hypogaea HOM05D005386 ORTHO05D006981 8.8e-06 55.5 42 66.7


User provided reference genes

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