Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 9.2e-139 496.9 252 100.0
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 1.4e-57 227.3 140 85.0
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 7.4e-56 221.5 140 82.9
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 3.2e-51 206.1 139 77.7
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 1.0e-49 201.1 139 77.0
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 2.6e-48 196.4 139 75.5
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 2.8e-47 193.0 139 71.9
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 2.8e-47 193.0 139 75.5
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 1.1e-46 191.0 139 72.7
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 1.1e-46 191.0 129 76.7
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 1.4e-46 190.7 139 71.2
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 7.0e-46 188.3 153 66.7
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 1.6e-45 187.2 128 75.0
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 1.9e-43 180.3 139 69.1
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 2.0e-40 170.2 141 63.8
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 2.6e-40 169.9 137 67.9
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 5.7e-32 142.1 139 59.7
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 2.0e-29 133.7 133 59.4
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 3.5e-29 132.9 137 52.6
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 5.9e-29 132.1 139 51.8
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 1.0e-28 131.3 137 51.8
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.3e-28 131.0 137 50.4
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 2.9e-28 129.8 137 50.4
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 2.9e-28 129.8 139 54.0
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 5.0e-28 129.0 139 51.8
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 5.0e-28 129.0 139 51.8
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.5e-27 127.5 139 51.8
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 1.9e-27 127.1 139 51.1
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 2.5e-27 126.7 129 53.5
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 4.3e-27 125.9 139 51.8
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 7.3e-27 125.2 139 51.8
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 7.3e-27 125.2 139 48.2
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 9.5e-27 124.8 155 48.4
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 2.1e-26 123.6 140 49.3
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 6.1e-26 122.1 139 48.2
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 8.0e-26 121.7 152 48.0
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 1.0e-25 121.3 139 47.5
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.4e-25 120.9 139 47.5
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.8e-25 120.6 137 48.2
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 3.1e-25 119.8 131 51.1
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 5.2e-25 119.0 114 57.9
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 1.2e-24 117.9 150 44.0
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.0e-24 117.1 136 48.5
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 4.4e-24 115.9 136 48.5
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 5.8e-24 115.5 130 47.7
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 5.8e-24 115.5 128 47.7
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 5.8e-24 115.5 139 48.9
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 7.5e-24 115.2 136 47.1
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 7.5e-24 115.2 127 48.8
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 9.8e-24 114.8 139 46.0
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 1.7e-23 114.0 172 40.1
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.7e-23 114.0 154 43.5
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 2.2e-23 113.6 139 45.3
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 2.2e-23 113.6 139 45.3
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 6.4e-23 112.1 131 44.3
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 6.4e-23 112.1 127 48.0
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 8.3e-23 111.7 136 46.3
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 8.3e-23 111.7 139 46.8
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 8.3e-23 111.7 115 54.8
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 1.1e-22 111.3 94 61.7
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 1.1e-22 111.3 152 43.4
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 1.1e-22 111.3 117 53.0
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.4e-22 110.9 141 46.8
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 1.9e-22 110.5 127 47.2
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 1.9e-22 110.5 139 45.3
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 2.4e-22 110.2 138 45.7
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 2.4e-22 110.2 142 43.0
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 2.4e-22 110.2 139 44.6
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 4.1e-22 109.4 139 46.0
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 9.2e-22 108.2 142 43.0
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.2e-21 107.8 145 46.9
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.6e-21 107.5 137 45.3
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.7e-21 106.7 153 45.8
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 3.5e-21 106.3 128 44.5
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 6.0e-21 105.5 138 44.2
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 6.0e-21 105.5 149 44.3
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 7.8e-21 105.1 131 49.6
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 7.8e-21 105.1 150 40.0
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 7.8e-21 105.1 152 43.4
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 1.0e-20 104.8 138 45.7
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.0e-20 104.8 139 46.8
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 1.7e-20 104.0 158 38.6
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 1.7e-20 104.0 144 44.4
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 2.3e-20 103.6 106 54.7
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 3.9e-20 102.8 141 43.3
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 5.0e-20 102.4 139 42.4
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 5.0e-20 102.4 128 43.8
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 5.0e-20 102.4 137 44.5
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 5.0e-20 102.4 139 41.7
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 5.0e-20 102.4 140 44.3
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 5.0e-20 102.4 142 40.8
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 6.6e-20 102.1 139 41.0
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 8.6e-20 101.7 139 42.4
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.1e-19 101.3 139 41.7
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 1.1e-19 101.3 141 43.3
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.5e-19 100.9 108 47.2
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 1.5e-19 100.9 142 45.1
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 1.5e-19 100.9 135 40.7
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 3.3e-19 99.8 141 42.6
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 3.3e-19 99.8 144 41.0
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 4.3e-19 99.4 122 46.7
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 4.3e-19 99.4 122 46.7
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 4.3e-19 99.4 143 40.6
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 1.2e-18 97.8 140 42.1
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 2.1e-18 97.1 130 40.8
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 2.1e-18 97.1 143 39.2
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 2.8e-18 96.7 132 37.9
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 2.8e-18 96.7 139 41.0
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 3.6e-18 96.3 112 44.6
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 3.6e-18 96.3 139 42.4
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 8.0e-18 95.1 139 39.6
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 1.1e-17 94.7 142 41.5
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.1e-17 94.7 134 41.8
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 1.8e-17 94.0 179 35.8
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 4.0e-17 92.8 140 39.3
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 4.0e-17 92.8 128 40.6
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 4.0e-17 92.8 128 40.6
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 4.0e-17 92.8 140 39.3
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 5.2e-17 92.4 140 39.3
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 5.2e-17 92.4 148 37.2
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 1.2e-16 91.3 139 40.3
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 1.2e-16 91.3 135 37.0
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 1.5e-16 90.9 139 39.6
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 4.4e-16 89.4 135 38.5
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 9.8e-16 88.2 137 39.4
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 9.8e-16 88.2 137 39.4
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.3e-15 87.8 135 37.8
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 3.7e-15 86.3 142 38.7
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 3.7e-15 86.3 154 36.4
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 3.2e-14 83.2 137 36.5
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 4.1e-14 82.8 142 38.0
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 4.1e-14 82.8 72 52.8
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 7.1e-14 82.0 145 39.3
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 1.6e-13 80.9 145 38.6
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 3.5e-13 79.7 147 33.3
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 5.6e-11 72.4 89 44.9
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.6e-10 70.9 75 50.7
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 1.6e-10 70.9 128 34.4
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.6e-10 70.9 110 40.9
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 3.6e-10 69.7 142 33.8
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 6.2e-10 68.9 147 33.3
TPR.G17895 Trifolium pratense HOM05D000003 ORTHO05D000022 1.5e-08 64.3 67 44.8
TPR.G21331 Trifolium pratense HOM05D000003 ORTHO05D000022 1.5e-08 64.3 67 44.8
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 3.4e-08 63.2 82 43.9
TPR.G34821 Trifolium pratense HOM05D008718 ORTHO05D010957 3.4e-08 63.2 68 39.7
TPR.G4558 Trifolium pratense HOM05D000101 ORTHO05D000089 3.4e-08 63.2 67 40.3
TPR.G5368 Trifolium pratense HOM05D008718 ORTHO05D000022 3.4e-08 63.2 88 37.5
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 9.9e-08 61.6 71 35.2
TPR.G36503 Trifolium pratense HOM05D008718 ORTHO05D010957 1.3e-07 61.2 67 43.3
TPR.G35524 Trifolium pratense HOM05D008718 ORTHO05D010957 1.7e-07 60.8 67 40.3
Atru.chr11.82 Acer truncatum HOM05D000003 ORTHO05D000022 3.7e-07 59.7 71 40.8
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 4.9e-07 59.3 54 51.9
TPR.G544 Trifolium pratense HOM05D008718 ORTHO05D010957 4.9e-07 59.3 59 40.7
Atru.chr1.2428 Acer truncatum HOM05D000003 ORTHO05D000004 8.3e-07 58.5 72 37.5
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 8.3e-07 58.5 138 31.2
Atru.chr13.1101 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-06 58.2 72 37.5
Atru.chr3.2200 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-06 57.8 71 39.4
Atru.chr7.713 Acer truncatum HOM05D000003 ORTHO05D000004 7.1e-06 55.5 72 36.1
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 7.1e-06 55.5 67 37.3
Atru.chr8.2517 Acer truncatum HOM05D000003 ORTHO05D000022 9.2e-06 55.1 71 40.8


User provided reference genes

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