Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 3.2e-234 814.7 408 100.0
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 9.5e-194 680.2 409 85.6
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 1.5e-191 672.9 411 82.7
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 1.6e-188 662.9 411 82.7
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 4.0e-176 621.7 388 82.7
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 3.6e-153 545.4 410 67.8
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 1.2e-151 540.4 412 67.5
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 9.0e-136 487.6 419 61.3
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 2.2e-134 483.0 418 61.2
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 3.8e-134 482.3 418 61.0
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 6.3e-129 464.9 413 58.4
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 3.6e-124 449.1 418 58.1
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 1.4e-123 447.2 429 55.5
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 2.2e-121 439.9 426 55.6
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 1.7e-118 430.3 422 55.2
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 5.0e-118 428.7 427 55.0
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 1.4e-115 420.6 427 52.7
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 2.3e-115 419.9 413 54.7
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 7.4e-114 414.8 424 52.8
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 1.3e-113 414.1 427 52.5
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 1.9e-109 400.2 436 51.6
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 3.6e-108 396.0 427 50.8
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 4.7e-108 395.6 428 50.7
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 1.3e-102 377.5 421 48.0
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 2.9e-102 376.3 411 51.1
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 3.8e-102 375.9 424 49.8
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 6.5e-102 375.2 427 48.9
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 1.9e-101 373.6 421 50.1
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 3.2e-101 372.9 424 48.1
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 1.6e-100 370.5 429 48.5
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 2.7e-100 369.8 424 47.4
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 3.6e-100 369.4 427 48.7
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 3.6e-100 369.4 393 52.9
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 4.7e-100 369.0 429 48.0
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 2.3e-99 366.7 424 46.5
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 8.8e-99 364.8 375 52.3
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 1.2e-98 364.4 428 47.2
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.5e-98 364.0 421 49.4
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 2.0e-98 363.6 430 50.0
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 3.4e-98 362.8 424 49.1
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 5.7e-98 362.1 429 48.5
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 5.7e-98 362.1 426 48.1
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 1.7e-97 360.5 428 47.0
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 2.8e-97 359.8 431 49.2
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.8e-97 359.8 418 47.8
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 3.7e-97 359.4 421 48.9
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.1e-96 357.8 423 47.3
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 1.4e-96 357.5 421 47.3
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.8e-96 357.1 415 46.0
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 2.4e-96 356.7 413 47.0
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 5.3e-96 355.5 395 51.6
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 7.0e-96 355.1 413 47.0
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 7.0e-96 355.1 421 45.4
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 1.2e-95 354.4 411 48.4
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 2.0e-95 353.6 415 46.5
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 2.0e-95 353.6 427 45.7
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 2.7e-95 353.2 419 45.3
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.7e-95 353.2 393 49.9
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 3.5e-95 352.8 393 49.9
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.5e-95 352.4 421 47.5
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 1.0e-94 351.3 389 47.3
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 1.7e-94 350.5 374 48.7
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 6.5e-94 348.6 412 48.1
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 9.4e-93 344.7 422 45.3
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.2e-92 344.4 393 49.1
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 3.6e-92 342.8 428 45.6
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 1.0e-91 341.3 410 46.6
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.3e-91 340.1 410 46.6
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.2e-91 339.0 399 49.6
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 1.2e-90 337.8 418 44.5
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 2.0e-90 337.0 426 43.7
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.6e-90 336.7 413 46.0
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 3.4e-90 336.3 425 43.3
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 7.5e-90 335.1 462 42.2
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 7.5e-90 335.1 413 45.3
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 2.2e-89 333.6 407 48.2
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.2e-89 333.6 411 45.5
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 3.7e-89 332.8 368 48.4
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 3.1e-88 329.7 411 45.3
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 2.0e-87 327.0 417 43.9
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.5e-87 326.2 416 46.2
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 1.3e-86 324.3 409 43.8
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.9e-86 323.2 409 44.0
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 6.6e-86 322.0 412 45.4
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 3.6e-84 316.2 420 43.1
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 8.0e-84 315.1 427 42.9
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.0e-83 314.7 417 43.2
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 4.0e-83 312.8 423 42.3
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 8.9e-83 311.6 407 46.2
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 2.0e-82 310.5 366 47.5
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 2.6e-82 310.1 386 45.1
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 3.4e-82 309.7 431 42.2
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 4.4e-82 309.3 412 44.4
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 9.8e-82 308.1 431 42.0
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 4.9e-81 305.8 425 41.6
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 1.1e-80 304.7 396 42.4
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 1.2e-79 301.2 425 41.9
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 7.8e-79 298.5 331 50.2
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 1.0e-78 298.1 464 40.3
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 5.0e-78 295.8 467 40.5
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 6.6e-78 295.4 425 41.4
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 4.0e-75 286.2 402 42.0
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 4.0e-75 286.2 420 40.7
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 6.4e-73 278.9 417 41.0
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 1.6e-71 274.2 365 43.0
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 7.5e-66 255.4 404 38.6
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 9.2e-64 248.4 367 41.1
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 1.1e-59 235.0 424 36.6
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 8.9e-59 231.9 424 36.1
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 8.3e-57 225.3 210 54.3
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 1.9e-56 224.2 339 42.5
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 3.5e-55 219.9 372 35.5
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 8.9e-51 205.3 343 36.2
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.2e-47 194.9 385 33.5
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 6.9e-43 179.1 255 43.1
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 9.0e-43 178.7 385 31.4
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 3.8e-41 173.3 333 33.3
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.4e-40 171.4 156 53.2
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 1.1e-37 161.8 424 31.1
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 1.9e-37 161.0 452 29.6
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 1.6e-36 157.9 88 89.8
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.8e-35 154.5 198 41.9
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 4.5e-34 149.8 177 48.6
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 1.4e-32 144.8 71 93.0
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 2.4e-32 144.1 396 30.1
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 5.1e-30 136.3 429 28.7
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 8.7e-30 135.6 447 28.4
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 9.6e-29 132.1 434 26.7
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 1.7e-25 121.3 381 26.2
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 2.2e-25 120.9 58 94.8
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 4.6e-23 113.2 119 49.6
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 3.9e-22 110.2 443 27.3
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 6.9e-19 99.4 220 30.9
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-18 98.6 465 24.5
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 5.8e-18 96.3 208 32.2
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.6e-15 88.2 207 30.4
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 2.3e-14 84.3 67 56.7
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 8.5e-09 65.9 59 57.6
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.7e-06 56.2 239 25.5
MD15G1008600 Malus domestica HOM05D005393 ORTHO05D006257 6.7e-06 56.2 64 50.0


User provided reference genes

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