Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 9.9e-138 493.4 246 100.0
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 8.8e-94 347.4 248 71.0
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 1.4e-86 323.6 246 70.7
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 5.7e-77 291.6 247 61.5
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 2.0e-69 266.5 225 62.2
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 1.6e-66 256.9 246 59.3
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 1.3e-65 253.8 240 57.1
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 4.9e-60 235.3 250 55.2
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.8e-46 190.3 243 47.7
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 3.1e-46 189.5 231 46.3
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 1.2e-45 187.6 249 47.8
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 1.4e-43 180.6 177 53.7
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 9.2e-43 177.9 245 44.9
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 1.0e-41 174.5 205 48.8
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.0e-41 174.5 215 46.5
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 1.7e-41 173.7 227 48.0
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 1.7e-41 173.7 146 63.0
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 2.3e-41 173.3 187 51.3
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 3.0e-41 172.9 201 49.8
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 3.9e-41 172.6 236 45.3
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 5.1e-41 172.2 226 44.7
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 6.6e-41 171.8 209 48.3
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 4.3e-40 169.1 207 45.9
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 4.3e-40 169.1 173 52.6
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 5.6e-40 168.7 196 49.0
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 7.3e-40 168.3 177 52.5
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 1.2e-39 167.5 186 50.5
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 1.2e-39 167.5 176 50.6
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 8.1e-39 164.9 195 47.7
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 8.1e-39 164.9 217 43.8
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 1.1e-38 164.5 160 55.6
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 1.1e-38 164.5 240 42.9
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 2.3e-38 163.3 245 44.5
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 3.1e-38 162.9 152 55.3
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 6.8e-38 161.8 152 54.6
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 8.9e-38 161.4 131 59.5
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.2e-37 161.0 210 44.8
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 1.2e-37 161.0 242 43.4
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 1.2e-37 161.0 185 47.6
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 1.5e-37 160.6 197 48.2
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 1.5e-37 160.6 175 47.4
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 2.6e-37 159.8 228 40.8
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 3.4e-37 159.5 244 41.8
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 5.8e-37 158.7 168 51.8
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 5.8e-37 158.7 240 41.2
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 5.8e-37 158.7 165 50.9
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 2.2e-36 156.8 244 40.6
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 6.4e-36 155.2 272 37.5
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 1.9e-35 153.7 204 44.6
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 7.1e-35 151.8 168 45.2
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 9.2e-35 151.4 177 47.5
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 9.2e-35 151.4 175 46.3
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 1.6e-34 150.6 214 45.3
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 2.7e-34 149.8 101 73.3
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 2.7e-34 149.8 190 46.3
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 6.0e-34 148.7 144 50.0
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 7.8e-34 148.3 152 47.4
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 7.8e-34 148.3 232 42.7
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 1.3e-33 147.5 240 42.9
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 1.3e-33 147.5 237 42.6
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 2.3e-33 146.7 159 45.9
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 5.1e-33 145.6 160 52.5
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 1.1e-32 144.4 245 42.9
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 1.1e-32 144.4 245 42.9
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 1.5e-32 144.1 160 51.9
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 2.5e-32 143.3 198 46.0
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 3.3e-32 142.9 165 49.7
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 3.3e-32 142.9 258 41.1
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 5.6e-32 142.1 168 47.6
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 2.1e-31 140.2 207 44.4
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.4e-30 137.5 238 41.2
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 1.4e-30 137.5 138 55.1
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 2.4e-30 136.7 160 50.6
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 6.9e-30 135.2 255 40.4
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 2.0e-29 133.7 242 35.5
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 7.8e-26 121.7 151 44.4
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 3.0e-25 119.8 128 44.5
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 1.5e-24 117.5 247 34.4
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 1.5e-24 117.5 153 42.5
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 2.5e-24 116.7 153 43.1
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 3.3e-24 116.3 186 38.7
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 4.3e-24 115.9 155 40.0
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 4.3e-24 115.9 151 44.4
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 5.6e-24 115.5 114 51.8
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 9.6e-24 114.8 187 38.0
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 9.6e-24 114.8 149 43.6
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 9.6e-24 114.8 173 43.4
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 9.6e-24 114.8 129 42.6
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 1.3e-23 114.4 183 37.2
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.3e-23 114.4 192 39.6
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 1.6e-23 114.0 158 39.2
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 2.8e-23 113.2 134 41.8
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 3.6e-23 112.8 137 40.1
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 6.2e-23 112.1 151 40.4
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 8.1e-23 111.7 158 39.9
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.4e-22 110.9 187 38.5
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 1.8e-22 110.5 164 38.4
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 1.8e-22 110.5 172 37.8
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 2.4e-22 110.2 190 37.9
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 3.1e-22 109.8 153 40.5
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 5.3e-22 109.0 182 36.8
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 6.9e-22 108.6 151 38.4
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 9.0e-22 108.2 147 40.8
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 9.0e-22 108.2 129 42.6
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 3.4e-21 106.3 131 40.5
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 4.5e-21 105.9 157 39.5
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 4.5e-21 105.9 128 39.1
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 9.9e-21 104.8 168 38.7
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 9.9e-21 104.8 168 38.7
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 1.3e-20 104.4 160 34.4
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 2.2e-20 103.6 131 40.5
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 2.2e-20 103.6 160 35.0
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 2.9e-20 103.2 132 40.9
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 3.8e-20 102.8 156 41.0
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 3.8e-20 102.8 145 37.9
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.1e-19 101.3 117 42.7
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 1.9e-19 100.5 154 36.4
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 3.2e-19 99.8 132 38.6
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 3.2e-19 99.8 166 36.7
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 5.4e-19 99.0 194 36.6
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 7.1e-19 98.6 121 41.3
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 9.3e-19 98.2 137 38.7
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 1.6e-18 97.4 175 34.3
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 2.7e-18 96.7 130 39.2
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 3.5e-18 96.3 168 36.3
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 7.9e-18 95.1 168 36.3
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 2.3e-17 93.6 164 34.1
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 3.0e-17 93.2 93 48.4
Actinidia34308 Actinidia chinensis HOM05D003663 ORTHO05D005327 3.9e-17 92.8 75 65.3
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 3.9e-17 92.8 147 32.7
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 6.7e-17 92.0 147 32.7
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 6.7e-17 92.0 153 32.7
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 6.7e-17 92.0 153 32.7
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 8.7e-17 91.7 153 32.7
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 8.7e-17 91.7 135 34.8
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.1e-16 91.3 136 40.4
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 1.1e-16 91.3 132 35.6
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.5e-16 90.9 133 41.4
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 1.9e-16 90.5 164 31.7
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 4.3e-16 89.4 130 33.8
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 4.3e-16 89.4 130 33.8
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 4.3e-16 89.4 130 35.4
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 1.3e-15 87.8 157 31.8
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 1.1e-14 84.7 146 33.6
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 1.1e-14 84.7 146 33.6
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 2.4e-14 83.6 146 32.9
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 2.4e-14 83.6 146 32.9
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 1.2e-13 81.3 161 31.1
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 1.2e-13 81.3 144 31.2
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 1.2e-13 81.3 155 34.2
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 1.5e-13 80.9 126 33.3
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 3.2e-11 73.2 107 34.6
Actinidia08745 Actinidia chinensis HOM05D000074 ORTHO05D006801 1.2e-10 71.2 85 48.2
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 1.2e-10 71.2 90 36.7
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 3.5e-10 69.7 114 35.1
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 4.6e-10 69.3 60 55.0
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 6.0e-10 68.9 123 35.0
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 1.0e-09 68.2 132 31.1
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 1.3e-09 67.8 218 27.5
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 2.3e-09 67.0 103 36.9
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 6.7e-09 65.5 73 41.1
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 3.3e-08 63.2 81 35.8
SMO220G0003 Selaginella moellendorffii HOM05D002232 ORTHO05D002323 6.2e-07 58.9 98 32.7
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 3.1e-06 56.6 97 35.1


User provided reference genes

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