Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1710 Trifolium pratense HOM05D007348 ORTHO05D009257 7.8e-40 166.8 90 100.0
Ca_25900_v3 Cicer arietinum L. HOM05D007348 ORTHO05D009257 1.8e-28 129.0 89 83.1
Psat3g137840 Pisum sativum HOM05D007348 ORTHO05D009257 6.8e-28 127.1 88 79.5
Medtr7g062470 Medicago truncatula HOM05D007348 ORTHO05D009257 2.8e-21 105.1 89 74.2
VMungo1383G1736 Vigna mungo HOM05D007348 ORTHO05D009257 1.4e-17 92.8 95 56.8
Phvul.008G118700 Phaseolus vulgaris HOM05D007348 ORTHO05D009257 2.4e-17 92.0 95 55.8
Glyma.07G134500 Glycine max HOM05D007348 ORTHO05D009257 5.4e-17 90.9 98 62.2
Glyma.18G184000 Glycine max HOM05D007348 ORTHO05D009257 5.4e-17 90.9 91 58.2
arahy.Tifrunner.gnm1.ann1.HF038C Arachis hypogaea HOM05D007348 ORTHO05D009257 4.6e-16 87.8 91 58.2
arahy.Tifrunner.gnm1.ann1.IF8W7F Arachis hypogaea HOM05D007348 ORTHO05D009257 4.6e-16 87.8 91 58.2
LjContig00141g0000939 Lotus japonicus HOM05D007348 ORTHO05D009257 1.0e-15 86.7 89 59.6
Lalb_Chr01g0022591 Lupinus albus HOM05D007348 ORTHO05D009257 2.8e-13 78.6 93 53.8
Lsat_1_v5_gn_9_32101 Lactuca sativa HOM05D007348 ORTHO05D009257 2.6e-11 72.0 89 50.6
CDE04G2102 Ceratophyllum demersum HOM05D000082 ORTHO05D001639 7.6e-11 70.5 56 62.5
Oeu006894.1 Olea europaea HOM05D007348 ORTHO05D009257 1.3e-10 69.7 89 48.3
THA.LOC104816258 Tarenaya hassleriana HOM05D007348 ORTHO05D009257 1.3e-10 69.7 46 71.7
Actinidia11269 Actinidia chinensis HOM05D007348 ORTHO05D009257 1.7e-10 69.3 92 47.8
CANSAT35G0511 Cannabis sativa HOM05D007348 ORTHO05D009257 2.2e-10 68.9 96 47.9
Haze_20824 Corylus avellana HOM05D007348 ORTHO05D009257 2.2e-10 68.9 65 60.0
CiPaw.09G195200 Carya illinoinensis HOM05D007348 ORTHO05D009257 3.8e-10 68.2 63 58.7
AT5G02160 Arabidopsis thaliana HOM05D007348 ORTHO05D009257 4.9e-10 67.8 82 53.7
QL07p048913 Quercus lobata HOM05D007348 ORTHO05D009257 4.9e-10 67.8 91 46.2
CSS0018490 Camellia sinensis var. sinensis HOM05D007348 ORTHO05D009257 1.4e-09 66.2 65 56.9
CARHR211200 Cardamine hirsuta HOM05D007348 ORTHO05D009257 1.4e-09 66.2 48 66.7
CDE07G1011 Ceratophyllum demersum HOM05D007348 ORTHO05D009257 1.4e-09 66.2 82 47.6
Cfa017345 Carpinus fangiana HOM05D007348 ORTHO05D009257 1.9e-09 65.9 99 45.5
Sabra06G0067000 Salix brachista HOM05D007348 ORTHO05D009257 1.9e-09 65.9 47 68.1
Ciclev10013090m.g Citrus clementina HOM05D007348 ORTHO05D009257 2.4e-09 65.5 88 46.6
Potri.006G087701 Populus trichocarpa HOM05D007348 ORTHO05D009257 2.4e-09 65.5 50 64.0
A10p33440 Brassica napus HOM05D007348 ORTHO05D009257 3.2e-09 65.1 72 51.4
BraA10t45374Z Brassica rapa HOM05D007348 ORTHO05D009257 3.2e-09 65.1 72 51.4
ClCG10G021280 Citrullus lanatus HOM05D007348 ORTHO05D009257 4.2e-09 64.7 45 64.4
PSO063G2704 Papaver somniferum HOM05D007348 ORTHO05D009257 4.2e-09 64.7 47 70.2
CsaV3_3G034760 Cucumis sativus L. HOM05D007348 ORTHO05D009257 5.4e-09 64.3 60 58.3
Prupe.6G258300 Prunus persica HOM05D007348 ORTHO05D009257 5.4e-09 64.3 49 61.2
Solyc10g086570.3 Solanum lycopersicum HOM05D007348 ORTHO05D009257 5.4e-09 64.3 47 68.1
vmacro20175 Vaccinium macrocarpon HOM05D007348 ORTHO05D009257 5.4e-09 64.3 98 45.9
C09p74340 Brassica napus HOM05D007348 ORTHO05D009257 7.1e-09 63.9 81 48.1
BolC9t60168H Brassica oleracea HOM05D007348 ORTHO05D009257 7.1e-09 63.9 81 48.1
PGSC0003DMG400019150 Solanum tuberosum HOM05D007348 ORTHO05D009257 7.1e-09 63.9 48 64.6
MELO3C009245.2 Cucumis melo HOM05D007348 ORTHO05D009257 9.3e-09 63.5 60 58.3
Dinv37151 Davidia involucrata HOM05D007348 ORTHO05D009257 9.3e-09 63.5 97 46.4
HanXRQChr10g0298181 Helianthus annuus HOM05D007348 ORTHO05D009257 9.3e-09 63.5 91 47.3
Sp6g40280 Schrenkiella parvula HOM05D007348 ORTHO05D009257 9.3e-09 63.5 46 67.4
Atru.chr8.2007 Acer truncatum HOM05D007348 ORTHO05D009257 1.2e-08 63.2 49 69.4
Migut.J00309 Erythranthe guttata HOM05D007348 ORTHO05D009257 1.2e-08 63.2 71 50.7
Aqoxy1G00895 Aquilegia oxysepala HOM05D007348 ORTHO05D009257 1.6e-08 62.8 94 43.6
MBI14_g08036_MAGBIO Magnolia biondii HOM05D007348 ORTHO05D009257 1.6e-08 62.8 90 47.8
Manes.08G081300 Manihot esculenta HOM05D007348 ORTHO05D009257 1.6e-08 62.8 45 66.7
COL.COLO4_14769 Corchorus olitorius HOM05D007348 ORTHO05D009257 2.1e-08 62.4 97 45.4
Gorai.006G171200 Gossypium raimondii HOM05D007348 ORTHO05D009257 2.1e-08 62.4 47 70.2
Sopen10g035960 Solanum pennellii HOM05D007348 ORTHO05D009257 2.1e-08 62.4 47 66.0
ATR0559G267 Amborella trichopoda HOM05D007348 ORTHO05D009257 2.7e-08 62.0 38 76.3
Eucgr.K03108 Eucalyptus grandis HOM05D007348 ORTHO05D009257 2.7e-08 62.0 89 47.2
SEGI_32371 Sequoiadendron giganteum HOM05D007348 ORTHO05D009257 2.7e-08 62.0 47 68.1
Gohir.D09G150000 Gossypium hirsutum HOM05D007348 ORTHO05D009257 3.5e-08 61.6 47 70.2
PSO339G0488 Papaver somniferum HOM05D007348 ORTHO05D009257 3.5e-08 61.6 95 44.2
Sed0022418 Sechium edule HOM05D007348 ORTHO05D009257 3.5e-08 61.6 46 60.9
TAR636G0176 Trochodendron aralioides HOM05D007348 ORTHO05D009257 3.5e-08 61.6 92 42.4
Zm00001eb355890 Zea mays HOM05D007348 ORTHO05D009257 3.5e-08 61.6 44 63.6
ECA247G0870 Erigeron canadensis HOM05D007348 ORTHO05D009257 4.6e-08 61.2 89 48.3
Nitab4.5_0008097g0010 Nicotiana tabacum HOM05D007348 ORTHO05D009257 4.6e-08 61.2 76 51.3
Peaxi162Scf00330g00089 Petunia axillaris HOM05D007348 ORTHO05D009257 4.6e-08 61.2 92 44.6
TWI77G0545 Tripterygium wilfordii HOM05D007348 ORTHO05D009257 4.6e-08 61.2 93 48.4
Cc06_g02390 Coffea canephora HOM05D007348 ORTHO05D009257 6.0e-08 60.8 62 59.7
Ah.12g059960 Amaranthus hybridus HOM05D007348 ORTHO05D009257 7.8e-08 60.5 47 66.0
AL6G11390 Arabidopsis lyrata HOM05D007348 ORTHO05D009257 7.8e-08 60.5 37 75.7
Gohir.A09G154300 Gossypium hirsutum HOM05D007348 ORTHO05D009257 7.8e-08 60.5 62 56.5
MD12G1144800 Malus domestica HOM05D007348 ORTHO05D009257 7.8e-08 60.5 45 62.2
Nitab4.5_0000527g0200 Nicotiana tabacum HOM05D007348 ORTHO05D009257 7.8e-08 60.5 83 48.2
Thecc.05G036200 Theobroma cacao HOM05D007348 ORTHO05D009257 7.8e-08 60.5 62 56.5
Pp3c3_5420 Physcomitrium patens HOM05D007348 ORTHO05D009257 1.0e-07 60.1 38 78.9
Migut.L01962 Erythranthe guttata HOM05D007348 ORTHO05D009257 1.3e-07 59.7 38 71.1
Nn2g13409 Nelumbo nucifera HOM05D007348 ORTHO05D009257 1.3e-07 59.7 47 59.6
Aa31LG1G22570 Aethionema arabicum HOM05D007348 ORTHO05D009257 1.7e-07 59.3 72 51.4
SGA_v2.0_scaffold94G28573 Striga asiatica HOM05D007348 ORTHO05D009257 1.7e-07 59.3 85 42.4
TAR636G2125 Trochodendron aralioides HOM05D007348 ORTHO05D009257 1.7e-07 59.3 92 41.3
Os05g0110100 Oryza sativa ssp. japonica HOM05D007348 ORTHO05D009257 2.3e-07 58.9 63 49.2
Carub.0006s0100 Capsella rubella HOM05D007348 ORTHO05D009257 3.0e-07 58.5 37 73.0
FAN09G3409 Fragaria x ananassa HOM05D007348 ORTHO05D009257 3.0e-07 58.5 90 47.8
Pp3c13_7350 Physcomitrium patens HOM05D007348 ORTHO05D009257 3.0e-07 58.5 38 76.3
Sc01g0004470 Simmondsia chinensis HOM05D007348 ORTHO05D009257 3.0e-07 58.5 45 55.6
CAN.G92.20 Capsicum annuum HOM05D007348 ORTHO05D009257 3.9e-07 58.2 72 48.6
RcHm_v2.0_Chr3g0466241 Rosa chinensis HOM05D007348 ORTHO05D009257 3.9e-07 58.2 89 47.2
SMO174G0219 Selaginella moellendorffii HOM05D007348 ORTHO05D009257 3.9e-07 58.2 38 71.1
Thhalv10014990m.g Eutrema salsugineum HOM05D007348 ORTHO05D009257 5.1e-07 57.8 37 73.0
MD04G1131700 Malus domestica HOM05D007348 ORTHO05D009257 5.1e-07 57.8 89 46.1
GSVIVG01034135001 Vitis vinifera HOM05D007348 ORTHO05D009257 5.1e-07 57.8 88 42.0
CANSAT35G1486 Cannabis sativa HOM05D007348 ORTHO05D009257 6.6e-07 57.4 62 54.8
AUR62042385 Chenopodium quinoa HOM05D007348 ORTHO05D009257 6.6e-07 57.4 39 69.2
PGR004G1504 Punica granatum HOM05D007348 ORTHO05D009257 8.7e-07 57.0 46 60.9
FvH4_6g13360 Fragaria vesca HOM05D007348 ORTHO05D009257 1.1e-06 56.6 90 46.7
FAN14G5390 Fragaria x ananassa HOM05D007348 ORTHO05D009257 1.1e-06 56.6 90 46.7
EL10As1g23094 Beta vulgaris HOM05D007348 ORTHO05D009257 1.5e-06 56.2 39 66.7
FAN05G4426 Fragaria x ananassa HOM05D007348 ORTHO05D009257 1.5e-06 56.2 90 46.7
AagrBONN_evm.TU.Sc2ySwM_117.386 Anthoceros agrestis HOM05D007348 ORTHO05D009257 1.9e-06 55.8 38 73.7
Duzib106G1977 Durio zibethinus HOM05D007348 ORTHO05D009257 1.9e-06 55.8 61 54.1
FAN02G3968 Fragaria x ananassa HOM05D007348 ORTHO05D009257 1.9e-06 55.8 88 44.3
Mapoly0046s0114 Marchantia polymorpha HOM05D007348 ORTHO05D009257 1.9e-06 55.8 93 44.1
unitig_21.g21015 Utricularia gibba HOM05D007348 ORTHO05D009257 1.9e-06 55.8 87 44.8
Duzib093G0801 Durio zibethinus HOM05D007348 ORTHO05D009257 3.3e-06 55.1 47 63.8
HPP92_026789 Vanilla planifolia HOM05D007348 ORTHO05D009257 7.3e-06 53.9 42 61.9


User provided reference genes

Program Settings