Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17035 Trifolium pratense HOM05D006279 ORTHO05D008055 1.2e-59 233.0 122 100.0
Ca_13203_v3 Cicer arietinum L. HOM05D006279 ORTHO05D008055 8.9e-47 190.3 118 83.1
Psat6g191840 Pisum sativum HOM05D006279 ORTHO05D008055 6.4e-45 184.1 122 79.5
Psat4g003200 Pisum sativum HOM05D006279 ORTHO05D008055 3.5e-43 178.3 122 78.7
Medtr1g098510 Medicago truncatula HOM05D006279 ORTHO05D008055 1.6e-40 169.5 128 72.7
Lalb_Chr01g0022321 Lupinus albus HOM05D006279 ORTHO05D008055 4.0e-39 164.9 123 74.0
Lj1g0019467 Lotus japonicus HOM05D006279 ORTHO05D008055 6.8e-39 164.1 118 73.7
Glyma.08G354200 Glycine max HOM05D006279 ORTHO05D008055 8.9e-39 163.7 122 73.0
arahy.Tifrunner.gnm1.ann1.YQI87S Arachis hypogaea HOM05D006279 ORTHO05D008055 4.4e-38 161.4 122 73.8
arahy.Tifrunner.gnm1.ann1.96G0FW Arachis hypogaea HOM05D006279 ORTHO05D008055 9.9e-38 160.2 122 73.8
Phvul.008G125700 Phaseolus vulgaris HOM05D006279 ORTHO05D008055 2.1e-35 152.5 122 69.7
VMungo1383G1366 Vigna mungo HOM05D006279 ORTHO05D008055 2.3e-34 149.1 122 67.2
Glyma.18G170600 Glycine max HOM05D006279 ORTHO05D008055 2.5e-33 145.6 110 70.0
arahy.Tifrunner.gnm1.ann1.BRZ89T Arachis hypogaea HOM05D006279 ORTHO05D008055 2.8e-32 142.1 124 65.3
QL10p041722 Quercus lobata HOM05D006279 ORTHO05D008055 3.8e-29 131.7 103 67.0
Haze_02674 Corylus avellana HOM05D006279 ORTHO05D008055 1.1e-28 130.2 105 66.7
Potri.005G066900 Populus trichocarpa HOM05D006279 ORTHO05D008055 1.4e-28 129.8 104 65.4
Haze_02661 Corylus avellana HOM05D006279 ORTHO05D008055 2.4e-28 129.0 101 67.3
Cfa011174 Carpinus fangiana HOM05D006279 ORTHO05D008055 3.2e-28 128.6 101 67.3
Eucgr.I00130 Eucalyptus grandis HOM05D006279 ORTHO05D008055 3.2e-28 128.6 96 67.7
Sabra05G0055000 Salix brachista HOM05D006279 ORTHO05D008055 4.2e-28 128.3 103 62.1
Sabra07G0084300 Salix brachista HOM05D006279 ORTHO05D008055 4.2e-28 128.3 103 65.0
Dinv44192 Davidia involucrata HOM05D006279 ORTHO05D008055 7.1e-28 127.5 104 64.4
Hma1.2p1_0847F.1_g227850 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 7.1e-28 127.5 96 68.8
Potri.007G102600 Populus trichocarpa HOM05D006279 ORTHO05D008055 9.3e-28 127.1 105 62.9
Atru.chr1.2785 Acer truncatum HOM05D006279 ORTHO05D008055 4.6e-27 124.8 100 63.0
Cpa.g.sc2692.1 Carica papaya HOM05D006279 ORTHO05D008055 4.6e-27 124.8 102 62.7
Duzib177G0075 Durio zibethinus HOM05D006279 ORTHO05D008055 4.6e-27 124.8 104 63.5
Thecc.08G189700 Theobroma cacao HOM05D006279 ORTHO05D008055 6.0e-27 124.4 104 62.5
TWI79G1313 Tripterygium wilfordii HOM05D006279 ORTHO05D008055 6.0e-27 124.4 103 62.1
Cc09_g10080 Coffea canephora HOM05D006279 ORTHO05D008055 7.8e-27 124.0 124 57.3
Actinidia20026 Actinidia chinensis HOM05D006279 ORTHO05D008055 1.7e-26 122.9 88 68.2
Ciclev10003637m.g Citrus clementina HOM05D006279 ORTHO05D008055 1.7e-26 122.9 104 62.5
Oeu006489.1 Olea europaea HOM05D006279 ORTHO05D008055 2.3e-26 122.5 121 52.9
Sc09g0002260 Simmondsia chinensis HOM05D006279 ORTHO05D008055 8.7e-26 120.6 106 64.2
vmacro13565 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 8.7e-26 120.6 102 59.8
vmacro12040 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 4.3e-25 118.2 82 67.1
CiPaw.14G026200 Carya illinoinensis HOM05D006279 ORTHO05D008055 5.6e-25 117.9 97 62.9
COL.COLO4_11288 Corchorus olitorius HOM05D006279 ORTHO05D008055 7.3e-25 117.5 99 59.6
ClCG02G000360 Citrullus lanatus HOM05D006279 ORTHO05D008055 1.3e-24 116.7 101 56.4
Peaxi162Scf00386g00058 Petunia axillaris HOM05D006279 ORTHO05D008055 1.6e-24 116.3 120 51.7
Gohir.A05G286900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 2.1e-24 115.9 104 57.7
THA.LOC104818424 Tarenaya hassleriana HOM05D006279 ORTHO05D008055 2.1e-24 115.9 105 60.0
Actinidia30262 Actinidia chinensis HOM05D006279 ORTHO05D008055 2.8e-24 115.5 91 61.5
EL10Ac4g09617 Beta vulgaris HOM05D006279 ORTHO05D008055 2.8e-24 115.5 99 56.6
CSS0005410 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 2.8e-24 115.5 102 57.8
RcHm_v2.0_Chr2g0163441 Rosa chinensis HOM05D006279 ORTHO05D008055 2.8e-24 115.5 97 62.9
CARHR204140 Cardamine hirsuta HOM05D006279 ORTHO05D008055 3.6e-24 115.2 102 59.8
Gohir.D05G287900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 3.6e-24 115.2 104 56.7
Gorai.009G302900 Gossypium raimondii HOM05D006279 ORTHO05D008055 3.6e-24 115.2 104 56.7
Ah.06g190980 Amaranthus hybridus HOM05D006279 ORTHO05D008055 6.2e-24 114.4 82 65.9
CSS0021017 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 6.2e-24 114.4 102 56.9
Manes.01G181300 Manihot esculenta HOM05D006279 ORTHO05D008055 6.2e-24 114.4 99 56.6
PGR119G2211 Punica granatum HOM05D006279 ORTHO05D008055 6.2e-24 114.4 81 69.1
Migut.B01200 Erythranthe guttata HOM05D006279 ORTHO05D008055 1.1e-23 113.6 110 58.2
Peaxi162Scf00033g00134 Petunia axillaris HOM05D006279 ORTHO05D008055 1.1e-23 113.6 118 53.4
TAR623G0329 Trochodendron aralioides HOM05D006279 ORTHO05D008055 1.1e-23 113.6 103 57.3
AUR62006855 Chenopodium quinoa HOM05D006279 ORTHO05D008055 1.8e-23 112.8 99 55.6
FAN09G2945 Fragaria x ananassa HOM05D006279 ORTHO05D008055 1.8e-23 112.8 97 60.8
CANSAT64G0511 Cannabis sativa HOM05D006279 ORTHO05D008055 2.4e-23 112.5 96 58.3
Nitab4.5_0000829g0220 Nicotiana tabacum HOM05D006279 ORTHO05D008055 2.4e-23 112.5 120 50.8
MSTRG.20541 Avicennia marina HOM05D006279 ORTHO05D008055 3.1e-23 112.1 116 52.6
Carub.0006s0782 Capsella rubella HOM05D006279 ORTHO05D008055 3.1e-23 112.1 90 63.3
CAN.G1592.9 Capsicum annuum HOM05D006279 ORTHO05D008055 3.1e-23 112.1 122 54.1
Nitab4.5_0000644g0080 Nicotiana tabacum HOM05D006279 ORTHO05D008055 3.1e-23 112.1 120 50.0
AUR62000510 Chenopodium quinoa HOM05D006279 ORTHO05D008055 4.0e-23 111.7 99 54.5
Nn2g15145 Nelumbo nucifera HOM05D006279 ORTHO05D008055 4.0e-23 111.7 104 54.8
Eucgr.L03476 Eucalyptus grandis HOM05D006279 ORTHO05D008055 5.3e-23 111.3 74 71.6
PGSC0003DMG400030782 Solanum tuberosum HOM05D006279 ORTHO05D008055 5.3e-23 111.3 101 55.4
FvH4_6g45500 Fragaria vesca HOM05D006279 ORTHO05D008055 9.0e-23 110.5 83 66.3
FAN14G0828 Fragaria x ananassa HOM05D006279 ORTHO05D008055 9.0e-23 110.5 83 66.3
Nitab4.5_0001688g0060 Nicotiana tabacum HOM05D006279 ORTHO05D008055 1.2e-22 110.2 123 52.0
Solyc06g054590.3 Solanum lycopersicum HOM05D006279 ORTHO05D008055 1.2e-22 110.2 122 51.6
Sopen06g019660 Solanum pennellii HOM05D006279 ORTHO05D008055 1.2e-22 110.2 122 51.6
MD09G1082400 Malus domestica HOM05D006279 ORTHO05D008055 1.5e-22 109.8 106 57.5
PGSC0003DMG400022672 Solanum tuberosum HOM05D006279 ORTHO05D008055 2.0e-22 109.4 120 51.7
CsaV3_2G019480 Cucumis sativus L. HOM05D006279 ORTHO05D008055 2.6e-22 109.0 101 55.4
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 3.4e-22 108.6 104 53.8
BraA10t44844Z Brassica rapa HOM05D006279 ORTHO05D008055 3.4e-22 108.6 105 54.3
FAN05G3461 Fragaria x ananassa HOM05D006279 ORTHO05D008055 3.4e-22 108.6 104 54.8
Sp6g34040 Schrenkiella parvula HOM05D006279 ORTHO05D008055 4.4e-22 108.2 92 57.6
AL6G19660 Arabidopsis lyrata HOM05D006279 ORTHO05D008055 5.8e-22 107.8 105 56.2
Thhalv10015068m.g Eutrema salsugineum HOM05D006279 ORTHO05D008055 7.6e-22 107.5 105 56.2
Nitab4.5_0010800g0010 Nicotiana tabacum HOM05D006279 ORTHO05D008055 7.6e-22 107.5 120 49.2
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 9.9e-22 107.1 122 49.2
CANSAT78G0480 Cannabis sativa HOM05D006279 ORTHO05D008055 9.9e-22 107.1 96 58.3
Eucgr.I00143 Eucalyptus grandis HOM05D006279 ORTHO05D008055 9.9e-22 107.1 76 65.8
AT5G09270 Arabidopsis thaliana HOM05D006279 ORTHO05D008055 1.3e-21 106.7 93 58.1
BcaB05g21561 Brassica carinata HOM05D006279 ORTHO05D008055 1.3e-21 106.7 105 53.3
BcaC03g13247 Brassica carinata HOM05D006279 ORTHO05D008055 1.3e-21 106.7 88 58.0
C02p03790 Brassica napus HOM05D006279 ORTHO05D008055 1.3e-21 106.7 88 58.0
C09p68050 Brassica napus HOM05D006279 ORTHO05D008055 2.2e-21 105.9 103 54.4
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 2.2e-21 105.9 125 49.6
C09p68110 Brassica napus HOM05D006279 ORTHO05D008055 2.2e-21 105.9 125 49.6
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 2.2e-21 105.9 125 49.6
MD10G1003300 Malus domestica HOM05D006279 ORTHO05D008055 2.2e-21 105.9 106 54.7
Prupe.3G241300 Prunus persica HOM05D006279 ORTHO05D008055 2.9e-21 105.5 85 60.0
TAR369G0312 Trochodendron aralioides HOM05D006279 ORTHO05D008055 2.9e-21 105.5 89 57.3
BraA02t04974Z Brassica rapa HOM05D006279 ORTHO05D008055 3.8e-21 105.1 103 52.4
Ca_10674_v3 Cicer arietinum L. HOM05D006279 ORTHO05D008055 3.8e-21 105.1 118 58.5
BolC2t06340H Brassica oleracea HOM05D006279 ORTHO05D008055 4.9e-21 104.8 103 52.4
BcaB08g37221 Brassica carinata HOM05D006279 ORTHO05D008055 6.4e-21 104.4 91 57.1
Eucgr.I00134 Eucalyptus grandis HOM05D006279 ORTHO05D008055 6.4e-21 104.4 73 65.8
GSVIVG01023542001 Vitis vinifera HOM05D006279 ORTHO05D008055 8.4e-21 104.0 94 58.5
Rhsim10G0172600 Rhododendron simsii HOM05D006279 ORTHO05D008055 1.1e-20 103.6 71 69.0
DCAR_026025 Daucus carota HOM05D006279 ORTHO05D008055 1.4e-20 103.2 108 50.9
COL.COLO4_13057 Corchorus olitorius HOM05D006279 ORTHO05D008055 1.9e-20 102.8 104 54.8
CAN.G256.17 Capsicum annuum HOM05D006279 ORTHO05D008055 2.4e-20 102.4 102 53.9
MBI06_g37673_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 2.4e-20 102.4 88 62.5
MBI06_g46723_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 2.4e-20 102.4 88 62.5
ATR0824G232 Amborella trichopoda HOM05D006279 ORTHO05D008055 4.2e-20 101.7 89 57.3
Aa31LG3G17730 Aethionema arabicum HOM05D006279 ORTHO05D008055 5.4e-20 101.3 103 53.4
HanXRQChr10g0308251 Helianthus annuus HOM05D006279 ORTHO05D008055 5.4e-20 101.3 102 50.0
MELO3C023226.2 Cucumis melo HOM05D006279 ORTHO05D008055 9.3e-20 100.5 101 51.5
Aqoxy2G01154 Aquilegia oxysepala HOM05D006279 ORTHO05D008055 2.1e-19 99.4 102 52.0
SHI36067 Sapria himalayana HOM05D006279 ORTHO05D008055 4.6e-19 98.2 78 60.3
Lsat_1_v5_gn_5_86080 Lactuca sativa HOM05D006279 ORTHO05D008055 1.0e-18 97.1 124 47.6
arahy.Tifrunner.gnm1.ann1.BUL9CE Arachis hypogaea HOM05D006279 ORTHO05D008055 1.3e-18 96.7 59 76.3
HPP92_013811 Vanilla planifolia HOM05D006279 ORTHO05D008055 1.3e-18 96.7 81 56.8
Sed0009157 Sechium edule HOM05D006279 ORTHO05D008055 1.7e-18 96.3 101 49.5
Atru.chr9.833 Acer truncatum HOM05D000003 ORTHO05D000126 1.9e-17 92.8 88 53.4
Os01g0861000 Oryza sativa ssp. japonica HOM05D006279 ORTHO05D008055 2.4e-15 85.9 65 61.5
COL.COLO4_36340 Corchorus olitorius HOM05D006279 ORTHO05D008055 2.6e-14 82.4 67 53.7
SEGI_20234 Sequoiadendron giganteum HOM05D006279 ORTHO05D008055 1.4e-12 76.6 63 52.4
Pp3c8_7150 Physcomitrium patens HOM05D006279 ORTHO05D008055 4.2e-12 75.1 71 47.9
Mapoly0027s0076 Marchantia polymorpha HOM05D006279 ORTHO05D008055 2.7e-11 72.4 89 41.6
Sopen01g029410 Solanum pennellii HOM05D006279 ORTHO05D008055 5.6e-09 64.7 76 42.1
Oeu062074.1 Olea europaea HOM05D013196 ORTHO05D010523 1.4e-07 60.1 49 63.3
Hma1.2p1_4173F.1_g338420 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 1.2e-06 57.0 50 62.0


User provided reference genes

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