Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 2245.7 1144 100.0
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 2161.3 1175 94.0
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 2048.5 1233 86.7
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1966.4 1077 94.5
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1960.3 1177 85.6
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1954.5 1199 84.6
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1932.5 1175 84.8
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1928.7 1171 84.4
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1927.5 1199 83.7
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1927.1 1174 84.3
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1916.4 1210 81.6
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1913.7 1210 81.6
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1901.3 1172 83.4
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1805.0 1174 79.8
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1800.4 1172 78.7
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1796.9 1172 78.5
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1790.8 1206 77.7
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1787.3 1174 78.6
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1781.5 1173 77.9
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1779.2 1173 78.4
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1778.1 1172 77.7
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1773.8 1178 78.4
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1773.1 1173 77.5
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1770.7 1172 78.1
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1768.4 1174 78.3
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1768.1 1183 77.2
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1765.0 1176 77.4
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1764.2 1173 77.6
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1761.5 1183 77.4
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1758.0 1173 77.9
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1746.5 1173 77.3
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1744.6 1221 74.9
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1743.8 1217 75.1
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1743.4 1221 74.9
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1737.6 1221 74.8
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1736.5 1174 76.3
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1734.9 1173 76.0
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1734.5 1172 76.5
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1734.2 1170 76.1
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1732.6 1174 77.0
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1732.2 1174 76.9
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1731.5 1174 77.0
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1722.2 1174 76.0
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1721.8 1175 76.1
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1714.9 1227 72.9
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1704.5 1174 75.6
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1696.8 1173 75.0
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1695.6 1230 72.2
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1691.4 1173 74.3
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1687.2 1172 74.7
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1684.5 1175 75.0
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1683.7 1180 74.0
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1677.1 1178 74.2
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1665.6 1176 73.4
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1664.8 1174 73.4
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1659.4 1213 72.5
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1658.3 1178 74.2
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1656.0 1176 74.3
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1655.6 1211 72.7
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1654.8 1175 73.8
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1654.4 1176 74.5
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1649.0 1173 73.0
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1647.9 1179 72.6
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1644.4 1173 73.1
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1640.6 1173 72.8
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1634.8 1160 73.6
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1631.3 1173 72.1
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1628.2 1177 72.3
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1624.4 1172 71.2
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1623.2 1173 72.0
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1622.4 1173 72.0
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1621.7 1171 71.9
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1620.9 1173 72.0
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1617.8 1173 72.1
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1617.1 1176 72.0
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1616.7 1177 71.5
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1613.6 1172 72.2
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1612.4 1177 71.5
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1612.0 1173 71.9
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1611.7 1173 72.2
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1611.3 1178 72.6
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1609.7 1178 71.8
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1609.7 1204 71.2
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1609.3 1173 71.7
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1606.3 1177 72.2
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1605.5 1175 71.9
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1602.8 1213 69.2
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1602.4 1101 75.2
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1602.0 1178 72.1
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1601.6 1180 71.8
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1599.3 1192 71.4
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1598.2 1177 71.4
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1597.0 1177 71.1
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1594.3 1174 70.3
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1593.9 1164 72.6
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1593.2 1175 71.7
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1591.6 1232 68.5
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1590.5 1232 68.7
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1589.7 1175 70.0
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1586.6 1170 72.1
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1581.6 1184 70.4
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1575.5 1176 71.3
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1575.5 1172 71.1
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1573.9 1183 70.6
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1572.0 1183 71.1
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1563.5 1156 71.9
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1560.8 1178 69.3
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1558.5 1163 71.8
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1552.3 1149 71.3
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1531.2 1187 69.3
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1506.9 1207 67.2
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1500.7 1146 68.6
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1495.7 1179 67.1
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1489.6 1180 67.1
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1479.9 1186 66.4
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1462.2 1185 65.7
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1458.4 1179 65.5
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1437.2 1110 69.1
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1416.7 948 76.2
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1405.6 1179 64.8
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1404.8 948 76.5
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1387.1 969 74.8
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1327.0 1188 61.4
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1317.4 1035 69.5
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1265.8 947 70.5
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1236.5 1143 60.2
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1198.7 960 67.5
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1181.0 980 66.0
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1179.1 888 69.9
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1152.5 799 75.5
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1144.8 808 75.4
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1137.9 977 65.0
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.2e-310 1070.1 815 69.9
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 8.5e-309 1063.9 813 69.7
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 4.9e-288 995.0 1171 51.8
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.1e-276 957.2 540 88.0
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 6.8e-274 948.0 724 69.8
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 1.9e-271 939.9 1157 47.2
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 3.8e-264 915.6 1209 45.2
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 3.1e-234 816.2 604 71.0
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 9.1e-226 788.1 716 61.2
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 4.7e-190 669.5 432 77.1
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 9.8e-180 635.2 360 87.8
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 2.5e-143 514.2 283 92.2
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 2.9e-139 500.7 307 79.8
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 9.3e-138 495.7 871 40.6
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 4.0e-133 480.3 311 76.8
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 2.0e-132 478.0 311 77.5
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 5.9e-116 423.3 285 76.1
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 1.6e-105 388.7 803 35.1
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 1.7e-99 368.6 1332 27.6
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 1.7e-94 352.1 228 75.4
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 1.5e-82 312.4 201 76.1
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 2.3e-80 305.1 205 74.1
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 5.2e-80 303.9 182 82.4
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 1.8e-69 268.9 187 69.5
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 2.3e-67 261.9 179 77.1
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 3.1e-64 251.5 144 85.4
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.2e-63 249.6 479 35.9
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 2.0e-63 248.8 186 70.4
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 9.8e-63 246.5 181 70.7
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 2.4e-61 241.9 236 58.9
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 2.8e-49 201.8 133 78.2
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.8e-48 199.1 251 50.6
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 3.7e-46 191.4 118 84.7
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 4.6e-44 184.5 139 68.3
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 1.3e-35 156.4 92 88.0
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 4.3e-34 151.4 88 86.4
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 4.7e-33 147.9 93 79.6
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 4.7e-33 147.9 93 79.6
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 8.1e-25 120.6 78 79.5
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 1.9e-21 109.4 59 89.8
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 9.6e-18 97.1 83 63.9
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 8.1e-17 94.0 106 46.2
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 2.0e-15 89.4 46 78.3
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 2.2e-14 85.9 81 45.7
Psat1g148000 Pisum sativum HOM05D005005 ORTHO05D004359 1.9e-10 72.8 65 60.0
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 2.2e-06 59.3 40 62.5


User provided reference genes

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