Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 1.2e-81 306.6 178 100.0
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 5.2e-72 274.6 178 89.3
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 7.1e-69 264.2 178 83.1
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 1.9e-61 239.6 180 77.2
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 7.8e-60 234.2 186 73.1
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 7.3e-58 227.6 185 70.3
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 7.3e-58 227.6 180 77.8
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.6e-57 226.5 192 72.9
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 1.6e-57 226.5 179 71.5
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 2.1e-57 226.1 184 71.7
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 2.8e-57 225.7 192 72.4
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 4.0e-56 221.9 180 73.3
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 9.0e-56 220.7 180 72.8
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 2.6e-55 219.2 180 72.2
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 7.6e-55 217.6 180 70.0
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 6.0e-52 208.0 196 69.4
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 1.8e-51 206.5 187 70.1
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 2.8e-49 199.1 181 68.5
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 3.7e-49 198.7 194 66.5
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 4.8e-49 198.4 178 70.8
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 1.1e-48 197.2 190 63.7
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 6.9e-48 194.5 190 68.9
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 2.6e-47 192.6 183 70.5
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 4.5e-47 191.8 186 61.8
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 2.2e-46 189.5 188 65.4
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 2.4e-45 186.0 150 76.7
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 7.1e-45 184.5 190 67.9
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 9.3e-45 184.1 202 57.9
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 1.2e-44 183.7 189 65.6
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 1.2e-44 183.7 194 64.4
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 2.1e-44 183.0 192 65.6
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 2.7e-44 182.6 181 61.3
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 3.5e-44 182.2 193 62.2
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 3.5e-44 182.2 190 64.2
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 4.6e-44 181.8 193 63.2
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 6.0e-44 181.4 189 67.7
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 6.0e-44 181.4 190 65.3
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 7.9e-44 181.0 180 67.8
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 7.9e-44 181.0 180 66.7
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 2.3e-43 179.5 178 62.9
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 3.0e-43 179.1 182 68.1
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 3.0e-43 179.1 191 57.6
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 3.9e-43 178.7 178 62.9
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 6.7e-43 177.9 193 63.7
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 6.7e-43 177.9 188 66.5
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 6.7e-43 177.9 190 64.7
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 8.7e-43 177.6 179 68.7
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 1.1e-42 177.2 179 65.4
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 1.1e-42 177.2 185 66.5
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 1.1e-42 177.2 181 65.2
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.5e-42 176.8 193 63.7
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 2.5e-42 176.0 178 67.4
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 2.5e-42 176.0 180 70.0
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 2.5e-42 176.0 185 60.0
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 2.5e-42 176.0 181 67.4
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 2.5e-42 176.0 185 63.2
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 3.3e-42 175.6 180 70.0
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 3.3e-42 175.6 179 69.3
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 4.3e-42 175.3 189 58.2
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 7.4e-42 174.5 180 67.2
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 7.4e-42 174.5 180 61.7
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 9.6e-42 174.1 186 62.9
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 9.6e-42 174.1 178 62.4
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 1.3e-41 173.7 182 60.4
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.3e-41 173.7 184 58.7
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 1.6e-41 173.3 180 66.7
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 1.6e-41 173.3 181 66.3
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 2.1e-41 172.9 180 66.1
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 2.8e-41 172.6 179 63.1
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 2.8e-41 172.6 184 58.2
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 2.8e-41 172.6 183 66.1
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 3.7e-41 172.2 206 54.4
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 4.8e-41 171.8 183 65.0
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 4.8e-41 171.8 192 61.5
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 4.8e-41 171.8 181 66.9
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 1.1e-40 170.6 178 64.0
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 1.1e-40 170.6 178 64.0
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 1.1e-40 170.6 198 53.5
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.1e-40 170.6 181 64.6
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 1.4e-40 170.2 141 74.5
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 1.8e-40 169.9 180 66.7
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.8e-40 169.9 178 62.9
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 2.4e-40 169.5 181 67.4
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 2.4e-40 169.5 187 62.6
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 2.4e-40 169.5 200 55.0
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 2.4e-40 169.5 193 64.2
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 3.1e-40 169.1 178 62.9
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 5.3e-40 168.3 177 66.7
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 6.9e-40 167.9 181 63.5
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 9.0e-40 167.5 180 66.1
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 9.0e-40 167.5 186 58.1
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 1.2e-39 167.2 150 71.3
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 1.5e-39 166.8 185 62.2
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.5e-39 166.8 195 62.6
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 2.0e-39 166.4 186 62.4
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 2.0e-39 166.4 178 62.9
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 2.0e-39 166.4 178 66.9
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.6e-39 166.0 139 72.7
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 4.5e-39 165.2 182 64.3
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 5.8e-39 164.9 158 67.1
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.0e-38 164.1 178 61.2
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 1.7e-38 163.3 186 60.2
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 2.2e-38 162.9 175 64.0
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 4.9e-38 161.8 183 66.1
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 4.9e-38 161.8 201 56.2
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 8.4e-38 161.0 178 57.9
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 2.5e-37 159.5 186 55.9
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 3.2e-37 159.1 184 58.2
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 4.2e-37 158.7 182 65.4
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 7.1e-37 157.9 178 59.6
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 1.6e-36 156.8 177 63.8
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 2.1e-36 156.4 184 60.3
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 7.9e-36 154.5 183 63.9
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 7.9e-36 154.5 216 56.0
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.0e-35 154.1 182 59.3
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 9.7e-34 147.5 86 84.9
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.3e-33 147.1 91 81.3
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 1.3e-33 147.1 125 66.4
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 2.8e-33 146.0 180 56.7
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 3.7e-33 145.6 191 48.7
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 9.0e-32 141.0 169 59.8
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 1.2e-31 140.6 210 45.7
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 3.4e-31 139.0 200 51.5
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 3.0e-27 125.9 167 57.5
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 3.9e-27 125.6 76 81.6
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 4.3e-26 122.1 71 83.1
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 2.8e-25 119.4 149 56.4
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 2.4e-24 116.3 70 75.7
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 3.4e-23 112.5 84 61.9
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 4.5e-23 112.1 146 61.6
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 4.5e-23 112.1 181 48.1
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 4.2e-21 105.5 108 56.5
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 4.2e-21 105.5 113 56.6
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 5.5e-21 105.1 73 76.7
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 3.6e-20 102.4 138 58.7
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 2.3e-19 99.8 176 38.6
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 2.3e-19 99.8 95 48.4
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 1.1e-18 97.4 170 50.6
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 2.6e-18 96.3 82 53.7
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 9.7e-18 94.4 117 61.5
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 2.6e-15 86.3 55 83.6
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 2.7e-12 76.3 151 49.7
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 4.4e-10 68.9 67 50.7
Pp3c2_26700 Physcomitrium patens HOM05D005519 ORTHO05D006423 3.5e-07 59.3 135 45.9
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 5.9e-07 58.5 39 61.5


User provided reference genes

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