Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1698 Trifolium pratense HOM05D006949 ORTHO05D008621 4.1e-110 401.4 196 100.0
TPR.G19861 Trifolium pratense HOM05D006949 ORTHO05D008621 1.0e-28 131.0 208 46.2
LjContig00357g0024622 Lotus japonicus HOM05D006949 ORTHO05D008621 1.5e-27 127.1 208 42.3
Psat2g033960 Pisum sativum HOM05D006949 ORTHO05D008621 1.9e-27 126.7 211 44.1
arahy.Tifrunner.gnm1.ann1.EF1RP8 Arachis hypogaea HOM05D006949 ORTHO05D008621 3.3e-27 125.9 208 41.8
arahy.Tifrunner.gnm1.ann1.EYI663 Arachis hypogaea HOM05D006949 ORTHO05D008621 3.3e-27 125.9 208 41.8
Glyma.02G256000 Glycine max HOM05D006949 ORTHO05D008621 4.3e-27 125.6 207 42.0
Ca_05950_v3 Cicer arietinum L. HOM05D006949 ORTHO05D008621 9.6e-27 124.4 206 43.7
Medtr5g082260 Medicago truncatula HOM05D006949 ORTHO05D008621 9.6e-27 124.4 208 42.3
TWI73G0868 Tripterygium wilfordii HOM05D006949 ORTHO05D008621 8.2e-26 121.3 208 39.4
VMungo0647G1369 Vigna mungo HOM05D006949 ORTHO05D008621 8.2e-26 121.3 207 41.1
Glyma.14G060500 Glycine max HOM05D006949 ORTHO05D008621 2.4e-25 119.8 207 40.6
vmacro06982 Vaccinium macrocarpon HOM05D006949 ORTHO05D008621 5.3e-25 118.6 208 37.5
Ciclev10031204m.g Citrus clementina HOM05D006949 ORTHO05D008621 6.9e-25 118.2 207 39.6
Lj1A953G41 Lonicera japonica HOM05D006949 ORTHO05D008621 6.9e-25 118.2 216 36.6
AUR62012231 Chenopodium quinoa HOM05D006949 ORTHO05D008621 1.5e-24 117.1 184 40.8
Hund23896 Selenicereus undatus HOM05D006949 ORTHO05D008621 1.5e-24 117.1 207 38.6
Dinv34407 Davidia involucrata HOM05D006949 ORTHO05D008621 2.0e-24 116.7 213 37.6
TAR369G0324 Trochodendron aralioides HOM05D006949 ORTHO05D008621 2.0e-24 116.7 206 38.8
Lj8A70T40 Lonicera japonica HOM05D006949 ORTHO05D008621 2.6e-24 116.3 206 38.8
PGR044G2272 Punica granatum HOM05D006949 ORTHO05D008621 2.6e-24 116.3 208 38.0
Phvul.008G225100 Phaseolus vulgaris HOM05D006949 ORTHO05D008621 3.4e-24 115.9 207 39.6
BcaB01g05752 Brassica carinata HOM05D006949 ORTHO05D008621 4.5e-24 115.5 207 40.1
CiPaw.02G191200 Carya illinoinensis HOM05D006949 ORTHO05D008621 4.5e-24 115.5 208 39.4
BraA03t09604Z Brassica rapa HOM05D006949 ORTHO05D008621 5.8e-24 115.2 209 39.7
Nn2g13667 Nelumbo nucifera HOM05D006949 ORTHO05D008621 5.8e-24 115.2 206 40.8
Manes.07G127800 Manihot esculenta HOM05D006949 ORTHO05D008621 7.6e-24 114.8 208 38.9
Cfa001347 Carpinus fangiana HOM05D002033 ORTHO05D002181 1.0e-23 114.4 208 38.5
Sc15g0003160 Simmondsia chinensis HOM05D006949 ORTHO05D008621 1.0e-23 114.4 208 37.5
CSS0025229 Camellia sinensis var. sinensis HOM05D006949 ORTHO05D008621 1.3e-23 114.0 208 37.0
Haze_17207 Corylus avellana HOM05D006949 ORTHO05D008621 1.3e-23 114.0 208 38.5
Gohir.A05G329100 Gossypium hirsutum HOM05D006949 ORTHO05D008621 1.3e-23 114.0 208 38.9
Lalb_Chr04g0250641 Lupinus albus HOM05D006949 ORTHO05D008621 1.3e-23 114.0 208 38.9
GSVIVG01032853001 Vitis vinifera HOM05D006949 ORTHO05D008621 2.2e-23 113.2 208 38.9
BcaB01g05962 Brassica carinata HOM05D006949 ORTHO05D008621 2.9e-23 112.8 207 39.6
A03p02430 Brassica napus HOM05D006949 ORTHO05D008621 2.9e-23 112.8 207 39.6
C03p02760 Brassica napus HOM05D006949 ORTHO05D008621 2.9e-23 112.8 207 39.6
BolC3t12830H Brassica oleracea HOM05D006949 ORTHO05D008621 2.9e-23 112.8 207 39.6
ClCG11G006250 Citrullus lanatus HOM05D006949 ORTHO05D008621 2.9e-23 112.8 208 38.5
CsaV3_6G001740 Cucumis sativus L. HOM05D006949 ORTHO05D008621 2.9e-23 112.8 208 38.0
Atru.chr12.11 Acer truncatum HOM05D006949 ORTHO05D008621 3.8e-23 112.5 208 37.0
Cc02_g06740 Coffea canephora HOM05D006949 ORTHO05D008621 3.8e-23 112.5 211 37.4
COL.COLO4_25627 Corchorus olitorius HOM05D006949 ORTHO05D008621 3.8e-23 112.5 205 38.5
Eucgr.J00234 Eucalyptus grandis HOM05D006949 ORTHO05D008621 3.8e-23 112.5 208 38.5
HanXRQChr08g0222291 Helianthus annuus HOM05D006949 ORTHO05D008621 4.9e-23 112.1 208 38.5
CANSAT56G2944 Cannabis sativa HOM05D006949 ORTHO05D008621 6.5e-23 111.7 207 37.7
CANSAT56G3839 Cannabis sativa HOM05D006949 ORTHO05D008621 6.5e-23 111.7 207 37.7
Gohir.D04G067200 Gossypium hirsutum HOM05D006949 ORTHO05D008621 6.5e-23 111.7 208 38.5
MELO3C008288.2 Cucumis melo HOM05D006949 ORTHO05D008621 8.4e-23 111.3 208 38.0
Thecc.10G022700 Theobroma cacao HOM05D006949 ORTHO05D008621 8.4e-23 111.3 208 37.5
Zm00001eb124680 Zea mays HOM05D006949 ORTHO05D008621 8.4e-23 111.3 209 37.3
Potri.008G066500 Populus trichocarpa HOM05D006949 ORTHO05D008621 1.1e-22 110.9 208 38.5
QL08p063009 Quercus lobata HOM05D006949 ORTHO05D008621 1.1e-22 110.9 208 38.0
Os01g0142100 Oryza sativa ssp. japonica HOM05D006949 ORTHO05D008621 1.4e-22 110.5 209 36.8
Aa31LG11G6760 Aethionema arabicum HOM05D006949 ORTHO05D008621 1.9e-22 110.2 207 39.1
ECA233G4954 Erigeron canadensis HOM05D006949 ORTHO05D008621 3.2e-22 109.4 208 38.5
Gorai.012G076200 Gossypium raimondii HOM05D006949 ORTHO05D008621 3.2e-22 109.4 208 38.0
AT5G05740 Arabidopsis thaliana HOM05D006949 ORTHO05D008621 4.2e-22 109.0 207 38.6
Cpa.g.sc19.196 Carica papaya HOM05D006949 ORTHO05D008621 4.2e-22 109.0 208 38.0
Duzib106G1634 Durio zibethinus HOM05D006949 ORTHO05D008621 5.5e-22 108.6 208 38.0
MBI14_g22161_MAGBIO Magnolia biondii HOM05D006949 ORTHO05D008621 5.5e-22 108.6 206 38.8
Carub.0006s0464 Capsella rubella HOM05D006949 ORTHO05D008621 9.3e-22 107.8 207 38.2
Thhalv10013357m.g Eutrema salsugineum HOM05D006949 ORTHO05D008621 1.2e-21 107.5 207 38.2
Sabra08G0048700 Salix brachista HOM05D006949 ORTHO05D008621 1.2e-21 107.5 208 36.5
Sed0026523 Sechium edule HOM05D006949 ORTHO05D008621 1.2e-21 107.5 206 38.3
AL6G15640 Arabidopsis lyrata HOM05D006949 ORTHO05D008621 2.1e-21 106.7 207 38.2
CARHR207520 Cardamine hirsuta HOM05D006949 ORTHO05D008621 3.5e-21 105.9 207 38.2
Aqoxy2G00931 Aquilegia oxysepala HOM05D006949 ORTHO05D008621 6.0e-21 105.1 206 37.9
Rhsim03G0141600 Rhododendron simsii HOM05D006949 ORTHO05D008621 7.9e-21 104.8 208 36.1
Sp6g37160 Schrenkiella parvula HOM05D006949 ORTHO05D008621 7.9e-21 104.8 207 38.6
AUR62022863 Chenopodium quinoa HOM05D006949 ORTHO05D008621 1.0e-20 104.4 212 34.0
CAN.G671.3 Capsicum annuum HOM05D006949 ORTHO05D008621 1.8e-20 103.6 205 35.1
PGSC0003DMG400028078 Solanum tuberosum HOM05D006949 ORTHO05D008621 1.8e-20 103.6 209 34.9
Nitab4.5_0000802g0110 Nicotiana tabacum HOM05D006949 ORTHO05D008621 2.3e-20 103.2 209 36.8
MSTRG.27339 Avicennia marina HOM05D006949 ORTHO05D008621 3.0e-20 102.8 210 36.7
EL10Ac2g04855 Beta vulgaris HOM05D006949 ORTHO05D008621 3.9e-20 102.4 206 35.4
Sopen06g009220 Solanum pennellii HOM05D006949 ORTHO05D008621 3.9e-20 102.4 208 34.6
Migut.F00695 Erythranthe guttata HOM05D006949 ORTHO05D008621 8.7e-20 101.3 205 35.6
Prupe.2G248000 Prunus persica HOM05D006949 ORTHO05D008621 8.7e-20 101.3 208 38.9
Ah.16g103330 Amaranthus hybridus HOM05D006949 ORTHO05D008621 1.1e-19 100.9 210 34.8
ATR0618G156 Amborella trichopoda HOM05D006949 ORTHO05D008621 1.3e-18 97.4 202 35.6
SalBow6G5628 Salvia bowleyana HOM05D006949 ORTHO05D008621 2.2e-18 96.7 206 33.0
DCAR_011799 Daucus carota HOM05D006949 ORTHO05D008621 2.8e-18 96.3 208 35.1
FvH4_7g24220 Fragaria vesca HOM05D006949 ORTHO05D008621 3.7e-18 95.9 207 36.2
FAN01G0746 Fragaria x ananassa HOM05D006949 ORTHO05D008621 3.7e-18 95.9 207 36.2
FAN03G2650 Fragaria x ananassa HOM05D006949 ORTHO05D008621 3.7e-18 95.9 207 35.7
FAN06G4275 Fragaria x ananassa HOM05D006949 ORTHO05D008621 3.7e-18 95.9 207 36.2
RcHm_v2.0_Chr1g0369791 Rosa chinensis HOM05D006949 ORTHO05D008621 3.7e-18 95.9 207 36.2
MD01G1149700 Malus domestica HOM05D006949 ORTHO05D008621 6.3e-18 95.1 210 36.2
SGA_v2.0_scaffold60G21015 Striga asiatica HOM05D006949 ORTHO05D008621 6.3e-18 95.1 209 33.5
FAN10G2794 Fragaria x ananassa HOM05D006949 ORTHO05D008621 1.4e-17 94.0 207 35.7
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 1.5e-16 90.5 206 34.0
MD07G1216100 Malus domestica HOM05D006949 ORTHO05D008621 2.0e-16 90.1 194 38.7
PSO339G1694 Papaver somniferum HOM05D006949 ORTHO05D008621 2.0e-16 90.1 205 33.7
PSO801G0338 Papaver somniferum HOM05D006949 ORTHO05D008621 2.0e-16 90.1 205 33.7
AUR62044146 Chenopodium quinoa HOM05D006949 ORTHO05D008621 5.9e-16 88.6 84 52.4
Peaxi162Scf01313g00004 Petunia axillaris HOM05D006949 ORTHO05D008621 1.7e-15 87.0 85 52.9
CDE07G1403 Ceratophyllum demersum HOM05D006949 ORTHO05D008621 2.9e-15 86.3 82 56.1
MD07G1216000 Malus domestica HOM05D006949 ORTHO05D008621 8.5e-15 84.7 76 59.2
unitig_747.g21713 Utricularia gibba HOM05D006949 ORTHO05D008621 1.9e-14 83.6 206 32.5
Solyc06g019200.4 Solanum lycopersicum HOM05D006949 ORTHO05D008621 5.5e-14 82.0 192 33.9
Nitab4.5_0011881g0010 Nicotiana tabacum HOM05D006949 ORTHO05D008621 1.6e-13 80.5 191 34.0
SEGI_09951 Sequoiadendron giganteum HOM05D006949 ORTHO05D008621 3.0e-12 76.3 76 48.7
BcaNung07046 Brassica carinata HOM05D006949 ORTHO05D008621 3.3e-11 72.8 196 35.7
HanXRQChr02g0038341 Helianthus annuus HOM05D000958 ORTHO05D000786 4.3e-11 72.4 38 84.2
AagrBONN_evm.TU.Sc2ySwM_368.3351 Anthoceros agrestis HOM05D006949 ORTHO05D008621 4.8e-10 68.9 75 48.0
Mapoly0031s0058 Marchantia polymorpha HOM05D006949 ORTHO05D008621 4.8e-10 68.9 78 46.2
Actinidia29689 Actinidia chinensis HOM05D006949 ORTHO05D008621 2.4e-09 66.6 144 34.7
CDE04G0574 Ceratophyllum demersum HOM05D006949 ORTHO05D008621 1.5e-08 63.9 144 32.6
Hma1.2p1_1970F.1_g309540 Hydrangea macrophylla HOM05D006949 ORTHO05D008621 1.5e-08 63.9 144 34.7
SMO111G0122 Selaginella moellendorffii HOM05D006949 ORTHO05D008621 2.6e-08 63.2 76 42.1


User provided reference genes

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