Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16963 Trifolium pratense HOM05D002208 ORTHO05D412787 3.5e-64 248.1 120 100.0
TPR.G7573 Trifolium pratense HOM05D002208 ORTHO05D002333 5.5e-41 171.0 97 86.6
CiPaw.12G014000 Carya illinoinensis HOM05D002208 ORTHO05D002333 1.3e-13 80.1 123 39.8
Sopen12g027460 Solanum pennellii HOM05D002208 ORTHO05D002333 2.2e-13 79.3 140 37.1
FvH4_6g48871 Fragaria vesca HOM05D002208 ORTHO05D002333 4.8e-13 78.2 130 33.8
Nitab4.5_0000026g0060 Nicotiana tabacum HOM05D002208 ORTHO05D002333 6.3e-13 77.8 135 36.3
Ciclev10012281m.g Citrus clementina HOM05D002208 ORTHO05D002333 1.4e-12 76.6 134 31.3
Eucgr.K02468 Eucalyptus grandis HOM05D002208 ORTHO05D002333 1.4e-12 76.6 129 32.6
Nitab4.5_0005983g0040 Nicotiana tabacum HOM05D002208 ORTHO05D002333 1.8e-12 76.3 135 36.3
Cfa018956 Carpinus fangiana HOM05D002208 ORTHO05D002333 7.0e-12 74.3 124 37.1
Hma1.2p1_0735F.1_g210550 Hydrangea macrophylla HOM05D002208 ORTHO05D002333 9.1e-12 73.9 137 34.3
RcHm_v2.0_Chr2g0168701 Rosa chinensis HOM05D002208 ORTHO05D002333 9.1e-12 73.9 129 32.6
Manes.06G093700 Manihot esculenta HOM05D002208 ORTHO05D002333 1.6e-11 73.2 131 33.6
QL10p016583 Quercus lobata HOM05D002208 ORTHO05D002333 1.6e-11 73.2 138 36.2
GSVIVG01008022001 Vitis vinifera HOM05D002208 ORTHO05D002333 1.6e-11 73.2 132 34.8
arahy.Tifrunner.gnm1.ann1.XR645Q Arachis hypogaea HOM05D002208 ORTHO05D002333 2.0e-11 72.8 122 34.4
CsaV3_1G005360 Cucumis sativus L. HOM05D002208 ORTHO05D002333 2.0e-11 72.8 122 34.4
CANSAT80G1267 Cannabis sativa HOM05D002208 ORTHO05D002333 2.7e-11 72.4 122 34.4
CiPaw.11G043100 Carya illinoinensis HOM05D002208 ORTHO05D002333 2.7e-11 72.4 138 36.2
Sed0018112 Sechium edule HOM05D002208 ORTHO05D002333 2.7e-11 72.4 122 33.6
CAN.G628.24 Capsicum annuum HOM05D002208 ORTHO05D002333 4.5e-11 71.6 138 34.8
Nitab4.5_0000269g0040 Nicotiana tabacum HOM05D002208 ORTHO05D002333 4.5e-11 71.6 153 32.0
TWI81G0026 Tripterygium wilfordii HOM05D002208 ORTHO05D002333 5.9e-11 71.2 132 34.1
Cpa.g.sc1815.1 Carica papaya HOM05D002208 ORTHO05D002333 1.3e-10 70.1 135 32.6
Lalb_Chr08g0235791 Lupinus albus HOM05D002208 ORTHO05D002333 1.3e-10 70.1 123 33.3
TAR629G3454 Trochodendron aralioides HOM05D002208 ORTHO05D002333 1.7e-10 69.7 134 32.1
arahy.Tifrunner.gnm1.ann1.92UJ4W Arachis hypogaea HOM05D002208 ORTHO05D002333 2.3e-10 69.3 123 34.1
DCAR_026044 Daucus carota HOM05D002208 ORTHO05D002333 2.3e-10 69.3 135 31.1
MSTRG.11387 Avicennia marina HOM05D002208 ORTHO05D002333 2.9e-10 68.9 123 34.1
HanXRQChr09g0270731 Helianthus annuus HOM05D002208 ORTHO05D002333 2.9e-10 68.9 131 33.6
vmacro16553 Vaccinium macrocarpon HOM05D002208 ORTHO05D002333 2.9e-10 68.9 134 32.8
Actinidia02718 Actinidia chinensis HOM05D002208 ORTHO05D002333 3.8e-10 68.6 138 29.0
EL10Ac5g10983 Beta vulgaris HOM05D002208 ORTHO05D002333 3.8e-10 68.6 130 32.3
DCAR_016543 Daucus carota HOM05D002208 ORTHO05D002333 3.8e-10 68.6 132 30.3
PGR083G1391 Punica granatum HOM05D002208 ORTHO05D002333 3.8e-10 68.6 135 31.9
TAR622G0098 Trochodendron aralioides HOM05D002208 ORTHO05D002333 3.8e-10 68.6 139 33.1
THA.LOC104813877 Tarenaya hassleriana HOM05D002208 ORTHO05D002333 5.0e-10 68.2 132 31.8
Sabra17G0072100 Salix brachista HOM05D002208 ORTHO05D002333 6.6e-10 67.8 130 30.8
ATR0564G339 Amborella trichopoda HOM05D002208 ORTHO05D002333 8.6e-10 67.4 134 30.6
DCAR_021659 Daucus carota HOM05D002208 ORTHO05D002333 8.6e-10 67.4 131 31.3
Migut.I00166 Erythranthe guttata HOM05D002208 ORTHO05D002333 1.9e-09 66.2 130 30.8
Rhsim12G0157000 Rhododendron simsii HOM05D002208 ORTHO05D002333 1.9e-09 66.2 122 35.2
Cfa007538 Carpinus fangiana HOM05D002208 ORTHO05D002333 2.5e-09 65.9 122 32.8
Lj5A112G61 Lonicera japonica HOM05D002208 ORTHO05D002333 2.5e-09 65.9 137 31.4
Potri.017G080700 Populus trichocarpa HOM05D002208 ORTHO05D002333 2.5e-09 65.9 122 32.0
CDE04G2856 Ceratophyllum demersum HOM05D002208 ORTHO05D002333 3.3e-09 65.5 137 32.8
TPR.G11820 Trifolium pratense HOM05D002208 ORTHO05D002333 3.3e-09 65.5 123 35.0
TWI15G0563 Tripterygium wilfordii HOM05D002208 ORTHO05D002333 5.5e-09 64.7 132 31.8
CDE02G1708 Ceratophyllum demersum HOM05D002208 ORTHO05D002333 9.5e-09 63.9 131 33.6
Haze_14548 Corylus avellana HOM05D002208 ORTHO05D002333 9.5e-09 63.9 122 32.8
QL02p081670 Quercus lobata HOM05D002208 ORTHO05D002333 9.5e-09 63.9 122 29.5
Sp1g16780 Schrenkiella parvula HOM05D002208 ORTHO05D002333 9.5e-09 63.9 132 30.3
Aqoxy3G00671 Aquilegia oxysepala HOM05D002208 ORTHO05D002333 1.2e-08 63.5 126 31.7
CiPaw.03G027800 Carya illinoinensis HOM05D002208 ORTHO05D002333 1.2e-08 63.5 122 32.0
Sed0003290 Sechium edule HOM05D002208 ORTHO05D002333 1.2e-08 63.5 122 32.0
Nitab4.5_0008408g0030 Nicotiana tabacum HOM05D002208 ORTHO05D002333 1.6e-08 63.2 114 36.8
Potri.004G128701 Populus trichocarpa HOM05D002208 ORTHO05D002333 1.6e-08 63.2 124 29.0
Sed0012479 Sechium edule HOM05D002208 ORTHO05D002333 1.6e-08 63.2 122 34.4
TPR.G15257 Trifolium pratense HOM05D002208 ORTHO05D002333 1.6e-08 63.2 133 33.1
FAN04G2256 Fragaria x ananassa HOM05D002208 ORTHO05D002333 2.8e-08 62.4 127 32.3
FAN08G2146 Fragaria x ananassa HOM05D002208 ORTHO05D002333 2.8e-08 62.4 127 32.3
FAN13G1964 Fragaria x ananassa HOM05D002208 ORTHO05D002333 2.8e-08 62.4 127 32.3
Nitab4.5_0000023g0310 Nicotiana tabacum HOM05D002208 ORTHO05D002333 3.6e-08 62.0 123 35.0
BcaC05g25778 Brassica carinata HOM05D002208 ORTHO05D002333 6.1e-08 61.2 124 29.8
Rhsim08G0068800 Rhododendron simsii HOM05D002208 ORTHO05D002333 6.1e-08 61.2 120 32.5
CsaV3_5G037970 Cucumis sativus L. HOM05D002208 ORTHO05D002333 8.0e-08 60.8 122 32.8
SGA_v2.0_scaffold7G04070 Striga asiatica HOM05D002208 ORTHO05D002333 8.0e-08 60.8 123 31.7
ClCG09G018310 Citrullus lanatus HOM05D002208 ORTHO05D002333 1.0e-07 60.5 122 32.8
Prupe.3G268700 Prunus persica HOM05D002208 ORTHO05D002333 1.0e-07 60.5 130 28.5
Sc12g0006300 Simmondsia chinensis HOM05D002208 ORTHO05D002333 1.0e-07 60.5 135 31.1
Lsat_1_v5_gn_1_13261 Lactuca sativa HOM05D002208 ORTHO05D002333 1.4e-07 60.1 135 31.9
SalBow7G1407 Salvia bowleyana HOM05D002208 ORTHO05D002333 1.8e-07 59.7 131 31.3
MSTRG.9631 Avicennia marina HOM05D002208 ORTHO05D002333 4.0e-07 58.5 131 29.8
Migut.D01826 Erythranthe guttata HOM05D002208 ORTHO05D002333 4.0e-07 58.5 131 29.8
SGA_v2.0_scaffold114G31901 Striga asiatica HOM05D002208 ORTHO05D002333 4.0e-07 58.5 123 30.1
ECA246G4691 Erigeron canadensis HOM05D002208 ORTHO05D002333 6.8e-07 57.8 123 31.7
Hund09355 Selenicereus undatus HOM05D002208 ORTHO05D002333 6.8e-07 57.8 129 31.8
CiPaw.04G018000 Carya illinoinensis HOM05D002208 ORTHO05D002333 8.9e-07 57.4 134 29.9
Sed0018970 Sechium edule HOM05D002208 ORTHO05D002333 1.2e-06 57.0 110 30.9
CDE05G2164 Ceratophyllum demersum HOM05D002208 ORTHO05D002333 1.5e-06 56.6 135 30.4
PSO782G1052 Papaver somniferum HOM05D002208 ORTHO05D002333 1.5e-06 56.6 137 27.7
PSO782G5710 Papaver somniferum HOM05D000593 ORTHO05D000562 2.0e-06 56.2 137 27.0
Medtr6g090475 Medicago truncatula HOM05D002208 ORTHO05D002333 2.6e-06 55.8 123 31.7
CBR_g50658 Chara braunii HOM05D002208 ORTHO05D002333 4.4e-06 55.1 134 29.1
Cpa.g.sc14.8 Carica papaya HOM05D002208 ORTHO05D002333 9.8e-06 53.9 133 29.3
TPR.G26864 Trifolium pratense HOM05D002208 ORTHO05D002333 9.8e-06 53.9 119 31.9


User provided reference genes

Program Settings